LOCUS       NM_001285785            2376 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus Rho GTPase activating protein 9 (Arhgap9), transcript
            variant 1, mRNA.
ACCESSION   NM_001285785
VERSION     NM_001285785.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114678.20.
            
            On Jan 13, 2018 this sequence version replaced NM_001285785.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ498128.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-468               AC114678.20        135019-135486       c
            469-665             AC114678.20        134560-134756       c
            666-746             AC114678.20        132251-132331       c
            747-854             AC114678.20        131820-131927       c
            855-913             AC114678.20        131548-131606       c
            914-1007            AC114678.20        131309-131402       c
            1008-1103           AC114678.20        131023-131118       c
            1104-1202           AC114678.20        130799-130897       c
            1203-1344           AC114678.20        130436-130577       c
            1345-1455           AC114678.20        130245-130355       c
            1456-1554           AC114678.20        129714-129812       c
            1555-1632           AC114678.20        129474-129551       c
            1633-1686           AC114678.20        129303-129356       c
            1687-1821           AC114678.20        128926-129060       c
            1822-1927           AC114678.20        128467-128572       c
            1928-2376           AC114678.20        127503-127951       c
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 74.5 cM"
     gene            1..2376
                     /gene="Arhgap9"
                     /note="Rho GTPase activating protein 9"
                     /db_xref="GeneID:216445"
                     /db_xref="MGI:MGI:2143764"
     exon            1..468
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     CDS             153..2099
                     /gene="Arhgap9"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="rho GTPase-activating protein 9 isoform 1"
                     /protein_id="NP_001272714.1"
                     /db_xref="CCDS:CCDS88101.1"
                     /db_xref="GeneID:216445"
                     /db_xref="MGI:MGI:2143764"
                     /translation="MFSGRWWPSIWGNLGLSLQSPSQGPQLCALYPFTYTGADGRQVS
                     LAEGDRFLLLRKTNSDWWLARRLGAPPSSRPIFVPAAYMTEESICCHNPADTTYNSSL
                     WTPGTKLYHGSLEELYLPQEPQVASGQPLHHPHKMCKSVSTGNVKACSLKSFKEGPGE
                     RSHWWMTEVAVKPGSMEQTETLTRDSSALQPQEWLDPQGLPSLSQSVPWLALSEQPGA
                     LRPCSALPQLLDDPHVEERSGLLNMTKIAQGGRKLRKNWGPAWVVLTGSSLVFYRERP
                     PQSASLQGWARAGSRPESSVDLRGAALASGRQLSSRRNVLHIRTVPGHEFLLQSDEET
                     ELRDWHRALRTVIERLDRENPLELRLSGSGPAELAELSAGEDDELESEPVSKSLMRLG
                     SRRTSSRCAEGTDQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREG
                     DTVPSFVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQ
                     AGQEGKLDLDSAEWDDIHVVTGALKLFFRELPQPLVPALLLPDFRDALELSEPEQCLS
                     KIQKLIDSLPRPNHDTLKYILEHLCRVIAHSDKNRMTAHNLGIVFGPTLFRPEQEASD
                     MAAHVFYPGQLVQLMLNNFASLFT"
     exon            469..665
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            666..746
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            747..854
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            855..913
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1007
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1103
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1202
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1203..1344
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1455
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1456..1554
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1555..1632
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1633..1686
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1821
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1822..1927
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..2376
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacacacac acacacacac acacacacac acaaaaacac acacgctcac acacactctt
       61 caaaccatgc ccttctgtac ggaggcacca gctcctattt ccttctggaa cttcagcacc
      121 cccttttcct ataggtgaca gtgccagcca ccatgttctc aggccggtgg tggccaagta
      181 tctggggaaa tctagggctg agtctacaaa gcccttctca gggaccccag ctctgcgccc
      241 tctatccgtt cacttacact ggggcagatg gccggcaggt gtctctggct gaaggtgaca
      301 ggttcctact gcttcgaaag accaactcag actggtggct ggcgaggcgt ctgggcgcac
      361 cccccagctc tcggcccatc tttgttccag ctgcatacat gacagaggaa tcaatctgct
      421 gccacaaccc agcagacact acctacaaca gctccctctg gactcctggg acaaagctgt
      481 atcatggctc cctggaggag ctctatctgc ctcaggaacc ccaggttgct tctgggcagc
      541 ctcttcacca tccccacaag atgtgcaaaa gtgtcagcac gggcaatgtg aaggcctgct
      601 ccctgaaatc cttcaaggaa gggccaggag aaaggtctca ctggtggatg acagaagttg
      661 ctgtgaaacc gggctccatg gagcagacag agactttgac tagggacagc agtgccctac
      721 agcctcagga atggctcgat ccacagggtt taccaagcct cagccaaagc gtcccatggc
      781 ttgctctctc tgaacagccg ggagccttga ggccctgttc agctctgcca cagctcctgg
      841 atgaccccca cgtggaagaa aggtcaggcc tgctcaacat gaccaagatt gctcaaggag
      901 ggcgcaaact caggaagaac tggggccctg cttgggtggt gttaactggt agcagccttg
      961 tgttttaccg agagcggcca ccgcagtctg catccctcca aggctgggcg cgggctggga
     1021 gccggccgga gagtagcgtg gacctgcgcg gggcggccct ggccagcggg cgccagctgt
     1081 ccagccgccg gaacgtcctg cacatccgca cggtcccggg acatgagttc ctgctgcagt
     1141 cggacgagga gaccgagctg cgagactggc accgcgcgct gcggactgtc atcgagcggc
     1201 tggatcggga gaaccccctg gagctgcgtc tgtcgggctc cggacccgcc gagctggccg
     1261 agctgagcgc tggtgaggat gacgaattgg aatcggaacc ggtgtccaag tccctgatgc
     1321 ggcttggcag ccgcagaact tccagtcggt gtgcagaggg cactgaccag aagaaccgcg
     1381 tgcggaacaa gttaaagcgg ctaatcgcca agagaccaac cttgcagagc ctacaagagc
     1441 ggggtctgtt ccgagaccag gtttttggct gccagttgga gtcgctgtgc caacgggaag
     1501 gggacaccgt gcccagcttt gtccggcttt gtgttgaggc cgtggataaa aaaggtctag
     1561 acgtggatgg tatttaccgg gtgagtggga acctggccgt ggtccagaaa ctccgcttcc
     1621 tggtagacag agaacgggca gtgacctctg atgggagata catgttccca gaacaggcag
     1681 gacaagaagg caaattagat ttagacagtg ccgaatggga tgatattcac gtggtcaccg
     1741 gagctttgaa gctttttttc cgggagctgc cacagcctct ggtgcctgca ttgttgctgc
     1801 ctgactttcg tgatgccctt gaactttctg agccagagca gtgcctctcc aaaatccaga
     1861 aattaataga ctcgctgccg aggcccaacc atgacactct gaagtacatc ctggagcatc
     1921 tgtgcagggt gatagcacac tcggataaga accgaatgac cgcccacaac ctgggaattg
     1981 tgtttggacc gacactgttt cgacctgagc aggaggcctc tgacatggcg gcccacgtat
     2041 tctaccccgg gcagctggtc cagttgatgc tcaacaactt tgccagcctc ttcacttgac
     2101 ccaggcgagg aagaggaagg cgcttcctgt gatttgtcag ctagcctttg gagagggctg
     2161 gcgggttttc tgttctgaag atacaatgtc ctcccaaggg acacccttca tttcccgctc
     2221 cagtctcact tgagctcctg gctaagaggg gttgctgaag gggaaggtat aggagcccgc
     2281 ttctgctctc cccaacatga caggtgatgc ttgttctcag tattccttta ttgtcaggaa
     2341 actgtgtcat tattaaagtt tgttctttcc tggaac
//
