LOCUS       NM_001081093            2986 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus ARF interacting protein 1 (Arfip1), transcript variant
            1, mRNA.
ACCESSION   NM_001081093 XM_006502481 XM_130985
VERSION     NM_001081093.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 2986)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
REFERENCE   4  (bases 1 to 2986)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102224.21.
            
            On or before Jun 24, 2014 this sequence version replaced
            XM_006502481.1, NM_001081093.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates and exon combination used
            for the transcript record were partially based on alignment to mRNA
            BC134624.1 from Bos taurus (cattle), taxonomy ID: 9913.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927934.8033601.1,
                                           SRR11927932.3466386.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               AC102224.21        78927-79138
            213-314             AC102224.21        113517-113618
            315-423             AC102224.21        126857-126965
            424-519             AC102224.21        132287-132382
            520-632             AC102224.21        133754-133866
            633-854             AC102224.21        141849-142070
            855-1012            AC102224.21        145762-145919
            1013-1187           AC102224.21        151570-151744
            1188-2986           AC102224.21        163661-165459
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 37.7 cM"
     gene            1..2986
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /note="ARF interacting protein 1"
                     /db_xref="GeneID:99889"
                     /db_xref="MGI:MGI:1277120"
     exon            1..212
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            213..314
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..1343
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /note="isoform 1 is encoded by transcript variant 1;
                     arfaptin-1; ADP-ribosylation factor interacting protein 1"
                     /codon_start=1
                     /product="arfaptin-1 isoform 1"
                     /protein_id="NP_001074562.1"
                     /db_xref="CCDS:CCDS38466.1"
                     /db_xref="GeneID:99889"
                     /db_xref="MGI:MGI:1277120"
                     /translation="MAQESPKNSAAEIPVTSNGEVDDAHEHGYNRDLKHSLPSGLGLS
                     ETQITSHGFDSTKEGVTEAGAPQGSSAPPLPCVLSPSRVAASKLTQQAGDLTVPAGGQ
                     RTHTKGGPVILADEIKNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEA
                     QIDILRDNKKKYENILKLAQTLSTQLFQMVHTQKQLGDAFADLSLKSLELHEEFGYNA
                     DTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYENARVEYDAYRTDLEE
                     LNLGPRDANTLPKIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEENKVKVLRNQLVLFH
                     SAVAAYFAGNQKQLELTLKQFHVRLKTPGVDAPSWLEEQ"
     exon            315..423
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            424..519
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            520..632
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            633..854
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            855..1012
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1187
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..2986
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2966..2971
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /note="hexamer: ATTAAA"
     polyA_site      2986
                     /gene="Arfip1"
                     /gene_synonym="2310030I10Rik; Arfaptin; D3Ertd598e"
                     /note="major polyA site"
ORIGIN      
        1 gaggtcgcgg gtgcaagtgt cctcggcggt tggttgcccg gagcctgtga cagctgtagc
       61 tgctccccgc ccccgaggcg tgggggagga gacgaaggaa aagctcccgg ttgcgcttcc
      121 ggtcccttct ccctctggcc gacgtgattc ccgagggctg cgaccgggag agcccgcgac
      181 ggagcgctgc cggcttcccc gctgacagac aggtgtctgc catggctcaa gaatctccca
      241 aaaactctgc agcagaaatc ccagtaacta gtaatggaga agttgacgat gctcatgagc
      301 atggctacaa tagggatttg aagcattcat taccatctgg acttggactc tcagaaactc
      361 agatcacatc tcatggcttt gacagtacca aagagggggt tactgaagca ggagcacccc
      421 aaggttcctc agcaccacct ttgccatgtg ttctgtctcc cagcagggtg gcagctagta
      481 agctgaccca gcaagcaggt gatctgactg ttcctgcagg tggccaaaga acacacacaa
      541 aaggaggacc agttattcta gcagatgaaa taaaaaatcc tgcaatggag aagttagaac
      601 ttgttagaaa atggagtctc aacacatata agtgtacccg gcaaattata tctgagaaac
      661 taggccgtgg ctcaagaact gtggaccttg aacttgaagc tcagattgat atattaagag
      721 ataataagaa aaaatatgaa aacattctga aactggctca gaccttgtcg acgcagcttt
      781 tccagatggt gcacacccaa aagcaactcg gagatgcctt tgctgacctg agtttgaagt
      841 ctctagagct ccatgaagaa tttggctata atgcagatac acagaagctg ctggctaaaa
      901 atggagagac tcttcttggg gccattaatt ttttcattgc tagtgtgaac accttggtga
      961 ataaaacaat tgaagataca ttaatgactg taaaacagta tgaaaatgcc agagttgaat
     1021 atgatgcgta ccgcactgat ttggaagaac tgaaccttgg gccacgtgat gcaaacactc
     1081 tgccaaaaat tgagcagtcg cagcatctgt tccaaataca taaggaaaaa tatgataaaa
     1141 tgcgcagtga tgtttctgtc aaattgaaat ttctcgagga aaataaggtc aaagtgctac
     1201 gcaaccaact ggtcctcttc cacagcgcag ttgctgccta cttcgccggg aatcagaagc
     1261 agcttgaact gacacttaag cagttccatg tcagattgaa aacccctgga gtggacgctc
     1321 catcttggct cgaagaacag taaactcccc tggaaaagaa ggaacggtgt attgttaaac
     1381 aactaatgaa ctagtaagag ttaagtagtg ttggggaggc cgtggagtga ccaccattgt
     1441 agtggctctt gcacagatag cttttatttt tcccttttca tacataacaa ttgagctgtt
     1501 aaatttgatg ggaaggtagg tgatttttta tgtaaacata atttctataa ttctaaacat
     1561 aataattttc ctttttgaga aatccttttt gtattgtgaa ggttatggct atttctgtag
     1621 gttgaaatat ttaatataga tttgcactga caagataaaa attcaaggct ttttttggtc
     1681 ccagaaatga gggccagcta tagttttcca agggaggttt acatgatttg tatcaatgtc
     1741 agatatttta tatatgaata tattcaacat ctttaagaag ttcatgtttg tgtattatct
     1801 taaagaaaaa agaagctgtt tcacagaata agttttatga tgtcctgcag tgtcacacaa
     1861 ggggcagccg aataagtgac tgactggccc atagcttgtt gcagatacac tttaaaaatt
     1921 aatctgtaac actgtaattt tgtttagata tttataaagg tccgggaatc acacagtcat
     1981 attttatgac gtgtttaaac ttatgaattt gacagttgtg ctagcagttt tgatttataa
     2041 tgaaatctgc ttaagaggga taggttttgt tattttgttt tgggtttttt tttaacatgt
     2101 ggacatggaa attattagca gtttctagag cagaaattta tagattagaa agctagtttg
     2161 ggagtaaatt ccgttttgat agaagagaat ttccagactg tgttcattgg cttccatgcg
     2221 tgactatacc agttaagcct taaatcacag atacgtgcct tctccgatgc agtaattctt
     2281 gcccaaccat tgtacataca tgaggaaacc cctatggata acatttgatt catctgtaac
     2341 gttgggatat tttgtcctca taaaaccaca cttgaggtgg atggtgaaaa caacctttga
     2401 attttatatt ttgtttctct tgattcctct tgaagaaggg ggtgatggga aagttttccc
     2461 ccttgggtaa tgaaaaggtt gtgtaaagtg tgtggaggtc gtaggacgga aaatccagtg
     2521 ctgggttact tgtgtagcac tgtggtcttg tgtatgcggt tggcttgtct actgtgtggt
     2581 tcctcagcga tgtaatcttg tttaaatgta aagttccctt gattttgtca tacatataaa
     2641 tgagtatttt cagagatccc acttcacctg ttatttctat tgtgttgaaa tgaagtactt
     2701 aaaattactg ttctccgtga actctgtaga ctgtatgatg tgttacatat ggccaactgc
     2761 cttttagctg gcctttttta ttaatatgcc tgttttaagt gcttaataca gtataatgtg
     2821 attgtaagtc atgagcctat tttaaatcat tccctcctgt gtatgtgtgc tctgagagag
     2881 cttcatttta ttctcccagc agagtaactt gtgatggtta tttacattcc ccagagtgtg
     2941 cctctggtgt gaattctgtc ttcttattaa agtgtctgct gcagaa
//
