LOCUS       NM_145985               3470 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus archain 1 (Arcn1), mRNA.
ACCESSION   NM_145985 XM_981097
VERSION     NM_145985.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3470)
  AUTHORS   Urra,H., Henriquez,D.R., Canovas,J., Villarroel-Campos,D.,
            Carreras-Sureda,A., Pulgar,E., Molina,E., Hazari,Y.M., Limia,C.M.,
            Alvarez-Rojas,S., Figueroa,R., Vidal,R.L., Rodriguez,D.A.,
            Rivera,C.A., Court,F.A., Couve,A., Qi,L., Chevet,E., Akai,R.,
            Iwawaki,T., Concha,M.L., Glavic,A., Gonzalez-Billault,C. and
            Hetz,C.
  TITLE     IRE1alpha governs cytoskeleton remodelling and cell migration
            through a direct interaction with filamin A
  JOURNAL   Nat Cell Biol 20 (8), 942-953 (2018)
   PUBMED   30013108
  REMARK    Erratum:[Nat Cell Biol. 2018 Oct;20(10):1228. doi:
            10.1038/s41556-018-0186-0.. PMID: 30089843]
REFERENCE   3  (bases 1 to 3470)
  AUTHORS   Bettayeb,K., Hooli,B.V., Parrado,A.R., Randolph,L., Varotsis,D.,
            Aryal,S., Gresack,J., Tanzi,R.E., Greengard,P. and Flajolet,M.
  TITLE     Relevance of the COPI complex for Alzheimer's disease progression
            in vivo
  JOURNAL   Proc Natl Acad Sci U S A 113 (19), 5418-5423 (2016)
   PUBMED   27114526
REFERENCE   4  (bases 1 to 3470)
  AUTHORS   Xu,X., Kedlaya,R., Higuchi,H., Ikeda,S., Justice,M.J., Setaluri,V.
            and Ikeda,A.
  TITLE     Mutation in archain 1, a subunit of COPI coatomer complex, causes
            diluted coat color and Purkinje cell degeneration
  JOURNAL   PLoS Genet 6 (5), e1000956 (2010)
   PUBMED   20502676
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3470)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3470)
  AUTHORS   Hata,S., Koyama,S., Kawahara,H., Doi,N., Maeda,T.,
            Toyama-Sorimachi,N., Abe,K., Suzuki,K. and Sorimachi,H.
  TITLE     Stomach-specific calpain, nCL-2, localizes in mucus cells and
            proteolyzes the beta-subunit of coatomer complex, beta-COP
  JOURNAL   J Biol Chem 281 (16), 11214-11224 (2006)
   PUBMED   16476741
  REMARK    GeneRIF: nCL-2, localizes in mucus cells and proteolyzes the
            beta-subunit of coatomer complex, beta-COP
REFERENCE   7  (bases 1 to 3470)
  AUTHORS   Kile,B.T., Hentges,K.E., Clark,A.T., Nakamura,H., Salinger,A.P.,
            Liu,B., Box,N., Stockton,D.W., Johnson,R.L., Behringer,R.R.,
            Bradley,A. and Justice,M.J.
  TITLE     Functional genetic analysis of mouse chromosome 11
  JOURNAL   Nature 425 (6953), 81-86 (2003)
   PUBMED   12955145
REFERENCE   8  (bases 1 to 3470)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC033387.1.
            
            On Jun 10, 2007 this sequence version replaced NM_145985.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC033387.1, BC023728.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 24.84 cM"
     gene            1..3470
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /note="archain 1"
                     /db_xref="GeneID:213827"
                     /db_xref="MGI:MGI:2387591"
     exon            1..139
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..1672
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /note="delta-COP; delta-coat protein; pale coat neuro"
                     /codon_start=1
                     /product="coatomer subunit delta"
                     /protein_id="NP_666097.3"
                     /db_xref="CCDS:CCDS40602.1"
                     /db_xref="GeneID:213827"
                     /db_xref="MGI:MGI:2387591"
                     /translation="MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGK
                     QHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEI
                     SEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMR
                     RKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR
                     PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGKRTSEATKVHAPPINMESVHM
                     KIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVD
                     KKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVN
                     IEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNK
                     SGSLEFSIPGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKY
                     EIL"
     exon            140..403
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            404..583
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            584..789
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            790..954
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1120
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1268
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            1269..1377
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            1378..1582
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..3456
                     /gene="Arcn1"
                     /gene_synonym="4632432M07Rik; nur17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcaagaggc gaagcggcgg aggctcctgt caggggcggc aggtccggag cggccagagc
       61 tccgcgtctc tgggcagcag cccgagtccc cgcagagcca gagcgcggcg cagcgcgccc
      121 cacctgcggc ctcaccatgg tgctgttggc agcagcagtc tgcacgaaag cgggaaaggc
      181 tattgtttct cgacagttcg tggagatgac ccgaactcgg attgaaggct tattagcagc
      241 tttcccaaaa ctcatgaaca ctggaaaaca acatactttt gttgaaacag agagtgtaag
      301 atatgtgtac caacctatgg agaaactgta catggtattg atcactacaa agaacagcaa
      361 tatcttagaa gatttggaga ctttaaggct cttctcaagg gtgatccctg aatattgccg
      421 agccttagag gaaaatgaaa tatctgagca ctgttttgat ttgatttttg cttttgatga
      481 aattgttgcc ctgggatacc gggagaatgt taacctggca cagatcagaa cctttacaga
      541 aatggactct cacgaggaga aagtattccg agcagtcaga gagactcaag aacgtgaggc
      601 taaggctgag atgcggcgta aagcaaagga attacaacag gcccgaagag atgcagagag
      661 acaggggaaa aaagcaccag gatttggcgg atttggtagt tctgcagtgt ctggaggcag
      721 cacagcagcc atgatcacag agactatcat tgaaactgat aaaccaaaag tggcgcctgc
      781 accagccaga ccttcaggcc ccagcaaggc tttgaaactt ggagctaaag gaaaggaagt
      841 agataacttt gtggacaaat tgaaatctga aggtgaaact attatgtctt ctaatatggg
      901 aaaacgtacc tcagaagcaa ccaaagtgca tgctccacct attaatatgg aaagtgtgca
      961 catgaagatt gaagagaaga tcacactaac ctgtgggaga gatggaggat tacagaatat
     1021 ggagttgcat ggcatgatca tgcttaggat ctcagatgac aaatttggcc ggattcgtct
     1081 tcatgtagaa aatgaagata agaaaggggt gcagctacag acgcatccaa atgtggataa
     1141 aaaacttttt actgcagagt ctctcattgg cttgaaaaac ccagagaagt catttccagt
     1201 caacagtgat gtaggggtac taaagtggag actacaaaca acagaggaat cttttattcc
     1261 gttgacaatt aattgctggc cttcggaaag tggaaatggc tgtgatgtca acatagagta
     1321 cgaactacag gaagataatt tagagctcaa tgatgtggtc atcactatcc cactcccatc
     1381 gggtgttggc gcgcctgtga ttggtgagat cgatggggaa tatcgacatg acagtcggag
     1441 aaatacgttg gagtggtgcc tgccagtgat tgatgccaaa aataagagtg gcagcctgga
     1501 gttcagcatt cctgggcagc ctaatgactt cttccctgtt caagtttctt tcatctccaa
     1561 aaagaattac tgcaacatac aggttaccaa agtgacccag gtggatggaa acagccccgt
     1621 caggttttcc acggagacca ctttcttagt ggacaaatac gaaatcctgt aataccaaga
     1681 agggaaagct gaaaaggaag gatttcagat taataaagaa gaagccaaaa gtggctgaag
     1741 agttttccaa atttacaagc cattggaggt cccccaaccc ccttttctga tacagtgcac
     1801 gttctctgcg cgcaaggacc ctcaactcac acccagtgtt gcggtgtcac agagacattt
     1861 ttgacaaatg acactgacat aaagggaaag gctgctgatt tctttggcca gcaggaagcc
     1921 agctctccag ggaatggaat gccccagtaa atagctcttc tgccttcacc taagtcttcc
     1981 tttattttaa gccctaaata taggtatatt tcatactttg ttttaaaaag ttttctctat
     2041 ggatttgagt ctttcacacc cctttgcttt ctgttttctt tcagtacact tagtcacaca
     2101 ctggggtcat ctgtctgttg tactgtgttc agcactctga gaacaaggtt atctaaccca
     2161 ttcttgacat tagacagtac cagtgaactg cttaagggat gtagagtcta gaagttgaaa
     2221 tacaaggttg tcttgttttc tctcctgtat ccatccattg ctccatctct ttatgaagtc
     2281 gtccttgtga gccctgccct tccagttgca ggcagtgttg tgaatcccat ttgtgtcaat
     2341 attaaaggta gccagctggg aagcagcttt tatgtgtaca caccttttca agatgccgaa
     2401 taagatggct acatccattt ccacaggaaa tcatgtctgc tgctaatgct accccaactt
     2461 acagttccct acttgactta tggttcccta cgtaacttac agttctctcc gtgctgtggg
     2521 gcgattgagt tgaagcacgt agtccactca gattccgcgt gtccacctcc tcccttccca
     2581 gatgcttttc ccttcatcag tcttctttcc agcagaaatg agtctagtga gtctgtgcca
     2641 tttctcatta gccctaaatc actggagaga tccatcttta ccatttcagt ggtagcattt
     2701 tgagaggtgt atagtgaggg gttactcaaa tataccccat ctaacctgac atttaccacc
     2761 tccctctctg tccttgtttc tgaaaacctt tttttctcct cctcaggctt tttggtgtca
     2821 tcatgtaata attgtaggag ttctcagctc attttgatct attacctttt caatagaggc
     2881 tgaatcagcc aatcccaccc gccaagcact gaactgggcg ggatggacga tcagttgctg
     2941 aaggctgcaa gcagtagcaa tgggaaacag tagatgacct ccattctctc aggtggctgc
     3001 agagcagagc agagcagaga tctccctctg aacacctgcc ttccctggca agagtatact
     3061 atccatgaag cagggcagtc ccacagaaga ctgtggctgg gatggcttgc caaagaaatt
     3121 tctagccttt ccctttcccc taaactgcat cagggaagaa tccttatctc tagcttcgtt
     3181 ttcacatgag gttttctgag gaaggggact gggataggaa gtctgtcatg tagtaaagta
     3241 gacgagaaat cttattaatc cagttgtatt tcagagtttg tccctatgat ttttaaagtc
     3301 aagtttaatt tcacaagact ttttttctga aattactttt ggggtaatat ttaaaatgag
     3361 agacattttg taaccctgta aaatacatag ggaatataac attccaatgt acacaacgaa
     3421 ggcaaattct taatcaaata aaagagtatt ataaaaaaaa aaaaaaaaaa
//
