LOCUS       NM_175391               2044 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus apolipoprotein L 7c (Apol7c), mRNA.
ACCESSION   NM_175391
VERSION     NM_175391.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL591864.14.
            
            On Jun 22, 2007 this sequence version replaced NM_175391.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK075855.1, BC139149.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AL591864.14        32575-32650
            77-179              AL591864.14        35378-35480
            180-306             AL591864.14        35773-35899
            307-411             AL591864.14        36982-37086
            412-2044            AL591864.14        39391-41023
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.4 cM"
     gene            1..2044
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /note="apolipoprotein L 7c"
                     /db_xref="GeneID:108956"
                     /db_xref="MGI:MGI:1920912"
     exon            1..76
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            77..179
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..1276
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /codon_start=1
                     /product="apolipoprotein L 7c"
                     /protein_id="NP_780600.1"
                     /db_xref="CCDS:CCDS37127.1"
                     /db_xref="GeneID:108956"
                     /db_xref="MGI:MGI:1920912"
                     /translation="MSTPERKRFIPTVAQHLLDRKSLEVLQLLLTEEETWKQFVAEVD
                     LSREEEAALRESLAEIFADPDGEDEDELQIDLQDKNERKEEDALSEALTETIADTDAE
                     DEEEIQNDLWHKERFLDAYPWVKLEIEESIRKLHALADKVDKVHRDCTISRVVASSSS
                     AVSGVLTILGLALAPVTAGVSLALSATGLGLGAAATVTSVSTSIVEKVSVVSAEAKAR
                     NLVPTNKDTMKGIIEVLDQSGPRLISGSTNTIQNIQGIQKCINAIQLSKANTRLANDA
                     RRLMTTGKTSTQTTKQVQKAFGGTTLAMTKGVRIMGAATTGFFLLLDVISLVEDSKHL
                     HEGAKSQTAAELQQQAWNLELKLQELKEVHNSLTQ"
     exon            180..306
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            307..411
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            412..2044
                     /gene="Apol7c"
                     /gene_synonym="2210421G13Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcctattct tatgccttgt atgcacagat ggtcactgga gtcacacagc tgagcactgc
       61 ctgttgaaga ttcctggtac cttttcctcc tgtagcctgg tcacctggtg agctggaagg
      121 tacacctatt aagtcctctg cctgacacct agacctggca gctatcatga gcaccccaga
      181 gagaaagcgc ttcattccca ctgtggctca gcacctcctg gacaggaaga gcctagaggt
      241 cctgcagctc ctgctgactg aagaggaaac ctggaaacag tttgtggcag aagttgattt
      301 gtccagggaa gaggaagctg ccttgcgaga gtctcttgct gagatctttg cagatcctga
      361 tggagaagat gaagatgaac tccaaattga cctgcaggac aagaacgaga ggaaagagga
      421 agatgccttg agtgaagccc tgactgagac catagctgat actgatgcag aagatgaaga
      481 ggagatccaa aatgacctgt ggcacaagga aaggttcttg gatgcttatc cttgggtgaa
      541 actggagatt gaggagagca tcaggaagct ccacgccctg gcagacaagg ttgacaaggt
      601 gcacagggac tgcaccatct cacgggtggt ggccagctcc agcagtgctg tgtctggagt
      661 cctgaccatc cttggtctgg ctctggcacc tgtgacagca ggagtcagtc tggcactgtc
      721 agccactggc ttggggctgg gggcagcagc cactgtgact agtgtttcca caagcattgt
      781 ggaaaaggta agtgtggtgt ctgctgaagc taaagccagg aacctggtgc caaccaacaa
      841 agacacaatg aagggcataa tagaagtttt ggatcagagt ggccccagac ttatttctgg
      901 atctacaaat accatccaga atatacaagg catccaaaaa tgtattaatg ccattcagtt
      961 gtccaaagcc aacactcgcc tagcaaatga tgccaggcgt ctcatgacca caggaaagac
     1021 atcaacccaa accactaaac aggtgcagaa agcctttgga ggtaccactc tggcaatgac
     1081 caaaggagtc cgaatcatgg gtgcagccac cacaggtttc ttcctcctgc tggatgtgat
     1141 cagccttgtg gaagactcga agcatttgca tgagggtgct aagtcacaga ctgctgcaga
     1201 gcttcagcag caagcttgga acctggagct gaagttacag gagctcaaag aggttcacaa
     1261 cagcctgact cagtgacctc ttcatcttct gtgcagctca gatgactggg gagggagtgt
     1321 gctggacaga gccatgaaca catgggagcc tctgacttac cccttcacag cagtgcctgc
     1381 taaagggaga ggacacatta agatacagga agccagaaca gagatgggac aatctcatga
     1441 ccacttacca gactccagct cttagatcca tcaacttccc aattaagagc caagctccca
     1501 agctggggag cacatccaag tcctgactaa gccacatggc tgctcctaag ctttgcccac
     1561 tgcactgctc ccagctgagg ctcaccaacc tcaccatcca ctgagctgtc aatcttccca
     1621 ctgctttgtg attggtggca cagaggcctt ctcctctttt cttcttctgc ctcattgtgt
     1681 gtttatccaa atatttctca atcttacagt cagactttgg ttgtgaaaat catttcctgt
     1741 tcttggtttt gggtagtcac atgggtgcca ttggtaaaat gctcaagact agaaagaaag
     1801 gacactggta atactgcctg tccagtcgtc acaagctctt ctccctacat gccactgttg
     1861 acgctaacag aaggagaggt gacaggatat gaatggtgaa cccttctctc tgctaccagt
     1921 ctcctgggaa aatcaaaagc tttaatgcct attgcaagct aaaatctgct gtaattggat
     1981 gagatctgcc aagatgaata ggatgggcta cacttgctcc acaatttttg aagaataaat
     2041 ttgt
//
