LOCUS       NM_001177533            1134 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus apolipoprotein L 11a (Apol11a), mRNA.
ACCESSION   NM_001177533 XM_891223
VERSION     NM_001177533.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591864.14.
            
            On Feb 16, 2019 this sequence version replaced NM_001177533.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164135
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                AL591864.14        57537-57621         c
            86-166              AL591864.14        54884-54964         c
            167-293             AL591864.14        52276-52402         c
            294-1134            AL591864.14        48571-49411         c
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.4 cM"
     gene            1..1134
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /note="apolipoprotein L 11a"
                     /db_xref="GeneID:626615"
                     /db_xref="MGI:MGI:3649094"
     exon            1..85
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /inference="alignment:Splign:2.1.0"
     exon            86..166
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..1134
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /codon_start=1
                     /product="apolipoprotein L 11a"
                     /protein_id="NP_001171004.1"
                     /db_xref="CCDS:CCDS49661.1"
                     /db_xref="GeneID:626615"
                     /db_xref="MGI:MGI:3649094"
                     /translation="MDWNEILEGIKKVERRIVEKAIDNFTEKFLRTDLRSLITEDGAW
                     NGFVEAAELSREEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLED
                     HIRKLRELADKFDQVHKDCTISNVVSTSASAASGVLALLGLALSTVTAGASLALSASS
                     VALGATSSVSSFTTTAVEESMRLSYESEARNLIGASMNVLEEILKIMPKITYKFYSTV
                     ADLAEAFKTLKDQIQTIRRARSISRRGAQARNLPSTGRSSGQVVPQMTRGARFQKGVF
                     TSVLLGWDVYDLVNQSKDLYYGAKTKSGGALRDLARKLEENLQEFEQKCKALQSDLPQ
                     "
     exon            167..293
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /inference="alignment:Splign:2.1.0"
     exon            294..1134
                     /gene="Apol11a"
                     /gene_synonym="EG626615"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acctcagatg tgcagctggt gactggaacc acacagctaa ggacagctgg gacacatcca
       61 aacttggctg caggaagatt ccttgcctgc acacctggag agcagtaaga aaaaacttgt
      121 caaaatccaa tggattggaa tgagatctta gagggcatta agaaagtgga acgtcgcatt
      181 gttgaaaaag ccattgataa cttcacggaa aagttcttaa gaacagatct gaggagcctt
      241 ataactgaag atggagcctg gaatggattt gtggaagcag cagagttgtc aagggaggag
      301 ggagaagcac tgcgtgatgc tctgaaggaa cgtttagcac aggatcccac agatgaaaat
      361 gacagacctc aaagggaaca gcagaaagag cggtttctgc gagagtttcc tcagttgaag
      421 aagaaacttg aggaccacat taggaagctc cgagagctgg ctgacaaatt tgaccaggtg
      481 cacaaggact gcaccatctc taatgtggtg tccacttctg ctagtgctgc ctccggagtc
      541 ctggccctcc ttggtttggc tctgtcaacc gttacagcag gggccagtct ggcactctca
      601 gcatcctctg tggctctggg agcaacatca tctgtgagta gctttacgac caccgctgtg
      661 gaagaatcaa tgagactgtc atatgaatct gaagccagaa acctgattgg agccagcatg
      721 aacgttcttg aagagatctt aaagatcatg cccaagatca catacaagtt ttatagtaca
      781 gttgcagatt tagccgaagc ctttaaaacc ctcaaggatc agatccaaac catcaggaga
      841 gccaggtcca tctctcgcag gggagcacag gccaggaacc tcccatccac tggaagaagc
      901 tctgggcagg ttgtccccca gatgaccaga ggggccaggt ttcaaaaagg agtgtttaca
      961 agtgtgctcc ttggatggga tgtgtatgac cttgtgaacc aatcaaagga tctgtattat
     1021 ggggcaaaaa caaagtcagg tggagcactg cgggacctgg ctcgcaagct ggaggagaac
     1081 cttcaggaat ttgagcagaa gtgcaaggct ctgcagtcag acctgcctca gtga
//
