LOCUS       NM_177820               1986 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus apolipoprotein L 10B (Apol10b), mRNA.
ACCESSION   NM_177820 XM_911397
VERSION     NM_177820.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL592187.17 and AK033678.1.
            
            On Jun 2, 2009 this sequence version replaced NM_177820.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK033678.1, AK144113.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AL592187.17        148861-148889
            30-1841             AK033678.1         2-1813
            1842-1986           AK033678.1         1815-1959
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.5 cM"
     gene            1..1986
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /note="apolipoprotein L 10B"
                     /db_xref="GeneID:328561"
                     /db_xref="MGI:MGI:3043522"
     exon            1..131
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            132..205
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..1173
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /codon_start=1
                     /product="apolipoprotein L 10b"
                     /protein_id="NP_808488.2"
                     /db_xref="CCDS:CCDS37128.2"
                     /db_xref="GeneID:328561"
                     /db_xref="MGI:MGI:3043522"
                     /translation="MARAWCSTDLKQGVARSVDGVADIVTEKFLKTDLRSLITEDGAW
                     KAFEEAAELSSEEGAILRDALKESLAQEPSDENDGPERKQQNERFLREFPELKKKLED
                     HIRKLRDLADHLDQVHKDCTISNVVSTFASAISGAMGLLALGLVPFTEGVSLLLSAAS
                     VGLGETASVTGLTTTVVEESMRLSDESEASRLVRASMNVFEEIVKIMSKITFKLLFTA
                     VGLVPAVKILRDHIRAMRRARIIIFPREEARNLTSSERSSVQGVLPMTRGARLRAVGF
                     TSLFLAWDVYDFVKQSKDLYNGAKTESAGALRELAHKLEEKLQVFEQIYKALQSDLPH
                     "
     exon            206..332
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            333..1986
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1965..1970
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1986
                     /gene="Apol10b"
                     /gene_synonym="9130218O11Rik"
                     /note="major polyA site"
ORIGIN      
        1 attttcgtgc actgagtgta tcaggcccag agcttgtgtc tggtgtgtct cagatgtgca
       61 gctggtgact ggaaccacac agctaaggac agctgggaca catccaaacg tggctgcagg
      121 aagattcctt gacctggaga gcagtaagaa aaaacctgtc aaattctaat ggctagagct
      181 tggtgctcaa cagacctcaa gcaaggagta gctcgaagtg ttgatggagt cgctgatatt
      241 gtcacggaaa aattcttgaa aacagatctg aggagcctga taactgaaga tggagcctgg
      301 aaggcatttg aggaagcagc agaattgtca agtgaggagg gagctatact tcgtgatgct
      361 ctgaaggaga gtttagcaca ggagccctca gatgaaaatg acggacctga aaggaagcag
      421 cagaatgagc ggtttctgcg agagtttcct gagttgaaga agaaacttga ggaccacatc
      481 aggaagctcc gagacctggc tgatcatctt gaccaggtgc acaaggactg caccatctcc
      541 aatgtggtgt ccacctttgc tagtgctatc tctggagcca tgggccttct tgctttgggt
      601 ctggtaccct ttacagaagg ggtcagtctg ttactctcag cagcctctgt gggtctgggg
      661 gagacagcat ccgtgactgg tcttacgacc accgttgtgg aagaatcaat gagactctca
      721 gatgaatctg aagccagtcg cctggttaga gccagcatga atgtatttga agagattgta
      781 aagatcatgt ctaagatcac attcaagctt ttatttacag ctgtgggatt agtccctgca
      841 gtcaaaatcc tcagggatca catccgagcc atgaggagag cgagaatcat cattttccct
      901 agagaagagg ccaggaacct cacatccagt gaaagaagct ctgtgcaggg tgttctccca
      961 atgaccagag gagccaggct tagagcagta gggtttacaa gtttgttcct tgcgtgggat
     1021 gtgtatgact ttgtgaagca atcaaaagat ctgtataatg gggcaaaaac agagtcagct
     1081 ggagcactgc gggaactggc tcacaagctg gaggagaagc tgcaggtatt cgagcagata
     1141 tataaggctc tgcagtcaga cctgcctcac tgaccccatc ctctaagcag ctaagagttc
     1201 agaggagatg atgtgtaaag gggtgggacc ttttttttta agcattaatg tcagaagttt
     1261 ctgtttgttt gtttgtttgt ttttccaaaa agattacaca aaagttgata aaaggggaga
     1321 aggttacgtg tcttacagga aacctgggtt aagggcagag cagcctaaag aaatggtgac
     1381 tggatcaaaa tgcaggaaca cggggaatgg aactggcagt ccagacctgc acagggacac
     1441 acacccgtgc tgcaacatgc tataacaagg gaaacagcct gaggtcaagt ccagggaaaa
     1501 gattgttgtg gagtttgaat ttctctggct gagcagagtg aggtcaatgt agaaggccgg
     1561 agatcccagg agaagaggaa cctggagtct aaaaggggat ccgacttccg gcagagtgga
     1621 gactctgcag acaagtcagc attcatcact ctaacaacac cctgctgcat ctgaacatct
     1681 gtggggtctc ctcgaggtct tgtgctggac ttgctaatgc ttagctatct gagaaatgat
     1741 attgttttag tgggtttgct ttgctgcact tttttcatag atatttttgg ggggggggtt
     1801 gggaagcaga aagtactttt tataaattct tttttttttt taattggctt tatcatgtag
     1861 ctggcctgga atttctaggt agaccagaaa cttgtgatgg cttaacgggg tgggataagg
     1921 tcctgagata acaattcctt cactttctgg tattcctctt gaaatataaa ccttgtttgg
     1981 tttttg
//
