LOCUS       NM_001309799             644 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus apolipoprotein C2 like (Apoc2l), mRNA.
ACCESSION   NM_001309799
VERSION     NM_001309799.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Hoffer,M.J., van Eck,M.M., Havekes,L.M., Hofker,M.H. and
            Frants,R.R.
  TITLE     Structure and expression of the mouse apolipoprotein C2 gene
  JOURNAL   Genomics 17 (1), 45-51 (1993)
   PUBMED   7691714
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Hoffer,M.J., Hofker,M.H., van Eck,M.M., Havekes,L.M. and
            Frants,R.R.
  TITLE     Evolutionary conservation of the mouse apolipoprotein e-c1-c2 gene
            cluster: structure and genetic variability in inbred mice
  JOURNAL   Genomics 15 (1), 62-67 (1993)
   PUBMED   7916738
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC149282.2.
            
            Summary: This locus represents naturally occurring read-through
            transcription between the neighboring apolipoprotein C-IV (Apoc4)
            and apolipoprotein C-II (Apoc2) genes on chromosome 7. The
            readthrough transcript encodes a protein that shares sequence
            identity with the downstream gene (Apoc2). [provided by RefSeq, Jun
            2015].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC106108.1, BI246277.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849386, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            readthrough transcript :: includes exons from GeneID 11425, 11813
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               AC149282.2         86626-86781         c
            157-223             AC149282.2         78868-78934         c
            224-374             AC149282.2         78550-78700         c
            375-644             AC149282.2         76900-77169         c
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7"
     gene            1..644
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /note="apolipoprotein C2 like"
                     /db_xref="GeneID:105886299"
                     /db_xref="MGI:MGI:5753381"
     exon            1..156
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /inference="alignment:Splign:2.1.0"
     exon            157..223
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..462
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /note="Apoc4-Apoc2 readthrough"
                     /codon_start=1
                     /product="apolipoprotein C-II precursor"
                     /protein_id="NP_001296728.1"
                     /db_xref="GeneID:105886299"
                     /db_xref="MGI:MGI:5753381"
                     /translation="MGSRFFLALFLVILMLGNEVQGNQEDDSGSLALLGTVQGSLLSY
                     WTSAKEVAKDLYQKTYPISMDEKLRDMYSKSSAAMSTYAGIFTDQLLTLLRGE"
     exon            224..374
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /inference="alignment:Splign:2.1.0"
     exon            375..644
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /inference="alignment:Splign:2.1.0"
     regulatory      620..625
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /note="hexamer: AATAAA"
     polyA_site      639
                     /gene="Apoc2l"
                     /gene_synonym="Apoc4-apoc2; Gm44805"
                     /note="major polyA site"
ORIGIN      
        1 agtgctgcct gtcccttccc cggtgaaaga gtggagtaca gcaggaggga cagagataga
       61 gagggaccaa gtccccagaa atgtccctgc tgaggtgcag gccacgggac ctgccatcag
      121 tctccctttc tgtgctgttc ttggtcagct ttgtaggtcc cagacagcat ggggtctcgg
      181 ttcttcctgg ctctattcct ggtcatcctg atgttgggaa atgaggtcca ggggaaccag
      241 gaagatgact cgggcagcct ggctctgctg ggcacggtgc agggctccct cttaagttac
      301 tggacctctg ccaaggaggt tgccaaagac ctgtaccaga agacataccc gatcagcatg
      361 gatgagaaac tcagggacat gtacagcaaa agctcggcgg ccatgagcac ttacgcaggc
      421 atttttacag accagctcct tactctcctg aggggagagt agctgccagg caagccccaa
      481 gttaggggaa aggaaaacct gatgacagac accgcgcctc tttgctcgca tcaccagacc
      541 aggatggtcc tacaccaccc tgtcccagct gctcccgcct tcctgctccc aactagagcc
      601 cagagtcttt cagtgaaaga ataaatgagt ccaggttcac tggc
//
