LOCUS       NM_138310               3615 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus apolipoprotein B receptor (Apobr), mRNA.
ACCESSION   NM_138310
VERSION     NM_138310.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3615)
  AUTHORS   Brown,M.L., Yui,K., Smith,J.D., LeBoeuf,R.C., Weng,W., Umeda,P.K.,
            Li,R., Song,R., Gianturco,S.H. and Bradley,W.A.
  TITLE     The murine macrophage apoB-48 receptor gene (Apob-48r): homology to
            the human receptor
  JOURNAL   J Lipid Res 43 (8), 1181-1191 (2002)
   PUBMED   12177162
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF141335.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF141335.1, BC030718.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="129"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.17 cM"
     gene            1..3615
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /note="apolipoprotein B receptor"
                     /db_xref="GeneID:171504"
                     /db_xref="MGI:MGI:2176230"
     exon            1..61
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /inference="alignment:Splign:2.1.0"
     CDS             5..2833
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /note="apolipoprotein B48 receptor; apolipoprotein B-100
                     receptor; apolipoprotein B-48 receptor"
                     /codon_start=1
                     /product="apolipoprotein B receptor"
                     /protein_id="NP_612183.1"
                     /db_xref="CCDS:CCDS21834.1"
                     /db_xref="GeneID:171504"
                     /db_xref="MGI:MGI:2176230"
                     /translation="MDFLRLRLPGLHQALRGALDSFSAFVSYLVGDTVPTVERQTQAA
                     EELGEVTEGKVVGEEAQEVLEGLRSGQSEGVEAPEETRRCQEGSLAGEQTWGWRADSS
                     ARPQAERQDTGSWKAAEDARGQEPSVPLKPEAEPGTHRDRSSNTAQEIWEHGEEEASS
                     GEPLRTCEQKEEEEEVVRAAESGMAEGVESQPTWHSEPGGNAGTEGQHVTEDSKEIDW
                     VAKDMVAEIEWFGAKGIDKEEERMVPMRDGERARAQGTQCPGAESEDQAMLSREAWTV
                     SDREGADSLGVQGTEYGSDPGDNFPGTTGRVWVLEEADKGDQQDEVDEKREAEVRFPI
                     QTLEAERTGEMTEGHIAEEEAMGEQETEGSFEDEERQDLAIRDNGVSLEEEVRAEESS
                     REKRNSWATEPTLVLDTEAKDEPDWEDSPEVSTEELFVGERSEAAQMTPEVLRVKVTE
                     GQDPELVRHSQALTKQLEEGQKGQEETSGAPDLSPERVLSLKEYPGPVGFAGPELEAW
                     GNWSRGVDRRNSQEVKADAEAGKEQTATEQAVEIRAEGGQEAQQPEVFGSGGEEALTS
                     VALNPELEGSQGAEAGTEESVEESKPTENEAAEEEAVVPWEADGTCRKRRLEEVTLSL
                     QDSEDTETSYLAEEIIVGIRAVDTEEGPKWEAGLAPETELGKAWCSEGRGEAGRGTEL
                     EETTEKQSGQEVGLVGSAEKVSGYDIQEIDGTEEGEQAEMETSVMAEDIRGTDGVTLG
                     SQAERAEGSITPMETEGLLRDQMLLEEEAGGGQSREQKVHNSEGEIQTLDDSSDQEGQ
                     QTHQIPTVAVPGPLESAEATAGAPGDVHSNWNEALLPGSRLDVSVPRSRVLLSRSSSR
                     RRSRPSFHRISVPEPQCDPPSPQPQAERPVPEQSSLQLEETPELSATKPEGTPVPARR
                     KMLGRGFGFAHPGMMQELQARLSQPKPQ"
     exon            62..2497
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /inference="alignment:Splign:2.1.0"
     exon            2498..2763
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /inference="alignment:Splign:2.1.0"
     exon            2764..3600
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3577..3582
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /note="hexamer: AATAAA"
     polyA_site      3600
                     /gene="Apobr"
                     /gene_synonym="Apob-48r; Apob48r"
                     /note="major polyA site"
ORIGIN      
        1 caggatggat tttctccggc ttcgtctccc tgggctacat caggctttga ggggagcact
       61 ggactccttc agtgcgtttg tgtcctacct cgtaggagac acagtcccca cagtagagag
      121 gcagacacag gcagctgagg aactgggaga ggtgactgag gggaaggttg taggagagga
      181 agcccaggag gtactggagg gacttagaag tggccagagt gagggggtag aagcacccga
      241 agagactaga agatgccaag aaggaagttt agctggtgaa cagacctggg ggtggagagc
      301 agatagctct gcaaggcccc aagcagaaag gcaggacact gggtcctgga aggcagctga
      361 ggatgccagg ggccaggagc caagtgtccc actgaagcct gaggcagagc ctgggactca
      421 cagagacagg agcagtaata cagcccagga gatctgggag cacggtgaag aggaagcaag
      481 cagtggggag cctctgagaa cctgtgaaca gaaggaagaa gaggaggagg tggtcagagc
      541 agcagagtca gggatggccg agggggtgga gtcacagcca acctggcaca gcgagcctgg
      601 ggggaatgct ggcactgagg ggcagcatgt gacagaggac agcaaagaga tagactgggt
      661 ggccaaagac atggttgcag aaatcgaatg gtttggtgcc aaagggattg acaaggaaga
      721 ggagaggatg gtcccaatga gggatggtga aagggcaagg gcacagggga cacaatgccc
      781 cggggccgag tctgaggacc aggccatgtt gagtagagag gcctggacag tctcagacag
      841 ggagggggct gatagcctag gagttcaggg aacagaatac gggtcagacc caggagacaa
      901 cttcccagga actactggga gagtctgggt cctagaagag gctgacaagg gagaccagca
      961 ggatgaggtc gacgagaaga gagaggctga agttaggttt ccgatccaga ccctggaggc
     1021 tgagagaact ggagagatga ctgaaggcca catagctgaa gaggaggcta tgggagaaca
     1081 ggaaacagag ggcagctttg aggatgagga gaggcaagac ttagccatca gggataatgg
     1141 agtgagtcta gaagaagagg tacgggcaga agaatcctcc agggagaaaa ggaactcctg
     1201 ggccacagag cctacgctag tcctagacac ggaggctaaa gatgaacctg actgggaaga
     1261 ctctccagaa gtcagcactg aggagttgtt tgtgggagag aggagtgaag ccgcccagat
     1321 gacaccagag gtattgagag taaaggtcac tgaaggacag gaccctgagc tggtgagaca
     1381 ttcccaggct ttaactaaac aacttgagga aggacagaag ggtcaggaag agactagtgg
     1441 agctccagac ctgagcccag agcgggtgct aagcttgaag gaatatcctg ggcctgtggg
     1501 gtttgcaggc cctgagctag aagcctgggg aaactggagt aggggtgtgg accgcagaaa
     1561 tagccaggag gtaaaagcag atgctgaagc aggcaaggaa cagactgcaa ccgagcaggc
     1621 agtggagatc cgggctgaag gaggccagga ggcccaacag ccagaggtct tcgggtcagg
     1681 aggagaggag gcactgacct ccgtagcact taacccggag ctggagggaa gccaaggagc
     1741 agaggcgggg acagaagagt cagtggagga atccaagccc acagaaaacg aggctgctga
     1801 ggaggaggct gtagtgcctt gggaggcaga tggaacttgc aggaagagga ggctggagga
     1861 ggtgactctg agcctgcaag acagtgagga cacagagacc agttatttgg ctgaggagat
     1921 tattgtgggt atcagggccg tggataccga ggaagggcca aaatgggaag ctgggttggc
     1981 tccagaaaca gagcttggga aagcctggtg ttccgagggc agaggggagg ctgggagagg
     2041 cacggagctg gaggagacta cagagaagca aagtggacag gaagttggct tggtgggctc
     2101 agcagagaag gtgtctggct atgatatcca agaaattgat gggactgaag agggggagca
     2161 ggcagagatg gagacatctg taatggcaga agacataagg gggacggatg gtgtgacttt
     2221 aggctcccag gcagagagag cagaggggtc cataaccccc atggagactg aggggctcct
     2281 aagagatcag atgctgttgg aagaagaggc tgggggaggg cagtcgcgag agcagaaggt
     2341 ccacaactca gagggcgaga tccaaacgct ggacgactct tcagaccagg aggggcagca
     2401 gacacaccaa atccccacag tagctgtgcc tgggcccttg gaatcggctg aggccacggc
     2461 aggtgcccca ggggatgttc acagcaactg gaatgaggcc ctgctccctg ggtcccgcct
     2521 ggatgtctct gtccctcgga gtcgtgtgct cctctctcga agctcctcac ggcggcgctc
     2581 gaggccctct ttccatcgaa tctctgttcc tgagccacag tgtgaccctc ccagccccca
     2641 accccaggcg gagcggccgg tccctgagca atcctctctt cagctagagg aaactccaga
     2701 gctaagtgcc acaaagcccg aggggactcc agtgccagcc agaagaaaaa tgctggggcg
     2761 tgggtttggc tttgctcatc ctggcatgat gcaggagctg caagcccgac tgagccagcc
     2821 aaagccacag tgacagggcc tagagcccta gagagagaga cctcccaaga gagtccgaag
     2881 gctcttctgg accctggtta ctcttgagtc cctcggccac tggaatatat cttttcaccc
     2941 tcccggcctc agctaaactg gatatttatg aagaccttga atctaggagt ctgattaagc
     3001 cagtgaggaa cctgctccac tggcatcgat catggattcc tttcccggtg ccctttcaca
     3061 tctgtctcag ctactcggaa ggctacccgg aagactgggc tggggaaact attttcccct
     3121 aaatttcccc agtatgctca cctgccaccc aatgtgagat aagaccagca agtgtaagtg
     3181 tgcttgcgtg taagatagca cacttctggg gtggaaacca gcccaaagga aagaggttca
     3241 aggggctgag caagggacac cacttggagt ccacggccac cggcaacaga tcagttgctt
     3301 tgagtttcca aaatgacggc tcggtatcac agctctgcag gttactatgc taacctccat
     3361 gccagagttg gggaacgttg cccaggaact ccaagcacat aggagtagag aggggttctg
     3421 tgtggctgga agcttccccc tccccccaac tccatcccaa accggcctgt tccttgggtg
     3481 tcagaccttc ctgtgaaaag atgtggaaac acaaaccggg ctggatggct ttattaggca
     3541 cccagcatgg tggcctaact caagagtgaa acaataaata aaccatttct taaaaataaa
     3601 aaaaaaaaaa aaaaa
//
