LOCUS       NM_183027               2892 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus adaptor-related protein complex AP-1, sigma 3 (Ap1s3),
            mRNA.
ACCESSION   NM_183027 XM_914447
VERSION     NM_183027.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Ohana,R., Weiman-Kelman,B., Raviv,S., Tamm,E.R., Pasmanik-Chor,M.,
            Rinon,A., Netanely,D., Shamir,R., Solomon,A.S. and Ashery-Padan,R.
  TITLE     MicroRNAs are essential for differentiation of the retinal
            pigmented epithelium and maturation of adjacent photoreceptors
  JOURNAL   Development 142 (14), 2487-2498 (2015)
   PUBMED   26062936
REFERENCE   3  (bases 1 to 2892)
  AUTHORS   Bultema,J.J. and Di Pietro,S.M.
  TITLE     Cell type-specific Rab32 and Rab38 cooperate with the ubiquitous
            lysosome biogenesis machinery to synthesize specialized
            lysosome-related organelles
  JOURNAL   Small GTPases 4 (1), 16-21 (2013)
   PUBMED   23247405
  REMARK    Review article
REFERENCE   4  (bases 1 to 2892)
  AUTHORS   Bouma,G.J., Hudson,Q.J., Washburn,L.L. and Eicher,E.M.
  TITLE     New candidate genes identified for controlling mouse gonadal sex
            determination and the early stages of granulosa and Sertoli cell
            differentiation
  JOURNAL   Biol Reprod 82 (2), 380-389 (2010)
   PUBMED   19864314
REFERENCE   5  (bases 1 to 2892)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2892)
  AUTHORS   Heldwein,E.E., Macia,E., Wang,J., Yin,H.L., Kirchhausen,T. and
            Harrison,S.C.
  TITLE     Crystal structure of the clathrin adaptor protein 1 core
  JOURNAL   Proc Natl Acad Sci U S A 101 (39), 14108-14113 (2004)
   PUBMED   15377783
REFERENCE   7  (bases 1 to 2892)
  AUTHORS   Boettger-Tong,H.L., Rohozinski,J., Agoulnik,A.I., Dohmae,K.,
            Nishimune,Y., Levy,N. and Bishop,C.E.
  TITLE     Identification and sequencing the juvenile spermatogonial depletion
            critical interval on mouse chromosome 1 reveals the presence of
            eight candidate genes
  JOURNAL   Biochem Biophys Res Commun 288 (5), 1129-1135 (2001)
   PUBMED   11700028
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BF715142.1, BC098237.1, AC083910.9 and BM899456.1.
            
            [WARNING] On Jul 25, 2024 this sequence was replaced by
            NM_183027.3.
            
            On Oct 3, 2007 this sequence version replaced NM_183027.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098237.1, AK028013.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-433               BF715142.1         1-433
            434-1250            BC098237.1         443-1259
            1251-2504           AC083910.9         141399-142652
            2505-2892           BM899456.1         1-388               c
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 40.92 cM"
     gene            1..2892
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /note="adaptor-related protein complex AP-1, sigma 3"
                     /db_xref="GeneID:252903"
                     /db_xref="MGI:MGI:1891304"
     exon            1..123
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..585
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /note="sigma1C-adaptin; sigma-adaptin 1C; sigma 1C subunit
                     of AP-1 clathrin; adaptor protein complex AP-1 sigma-1C
                     subunit; golgi adaptor HA1/AP1 adaptin sigma-1C subunit;
                     adapter-related protein complex 1 sigma-1C subunit;
                     clathrin assembly protein complex 1 sigma-1C small chain;
                     adaptor protein complex AP-1 subunit sigma-1C;
                     adapter-related protein complex 1 subunit sigma-1C;
                     adaptor-related protein complex 1 subunit sigma-1C"
                     /codon_start=1
                     /product="AP-1 complex subunit sigma-3"
                     /protein_id="NP_898848.1"
                     /db_xref="CCDS:CCDS35628.1"
                     /db_xref="GeneID:252903"
                     /db_xref="MGI:MGI:1891304"
                     /translation="MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGH
                     RTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELD
                     IIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEEYMNKPTF"
     exon            124..302
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /inference="alignment:Splign:2.1.0"
     exon            303..411
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /inference="alignment:Splign:2.1.0"
     exon            412..549
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /inference="alignment:Splign:2.1.0"
     exon            550..2876
                     /gene="Ap1s3"
                     /gene_synonym="1190009B22; Jr2; [s]3A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcattgtg ggaagtagcc atggtctgag gctagcgcct cacctgtcag ccgcccgggc
       61 tgctacagtc tcttctggcc ctcgcatccc gggcaatcgc tgctgtaggg acccgggacc
      121 atgatacatt tcatcttgct cttcagtcga caagggaagc tgcggctgca gaaatggtac
      181 accacactcc ctgacaagga gaggaagaag atcacccgcg acatcatcca gaccgtcctc
      241 tctcgtgggc acaggaccag cagcttcatt gactggaagg agctgaaact tgtttataaa
      301 aggtatgcta gtttatattt ttgctgtgca atagaaaatc aagacaatga gctcttgaca
      361 ctagagattg ttcatcgtta tgtggagttg ctggataaat actttggaaa tgtctgtgag
      421 ctggatatta tctttaattt tgaaaaggca tattttatcc ttgatgagtt tataataggt
      481 ggagaaattc aggaaacatc caagaaaaca gcagtcaagg ccattgaaga ctctgatatg
      541 ttacaagaga caatggaaga atacatgaac aagcccacgt tttaagtgta cagtctactt
      601 gaagattctg agcgctccat gctgtgaacc tacaaacaag caactccttg catccagtct
      661 ccgcacggcc tctggcacca tgccaaaaac tacttaaagg gattctgtgt tagctagcaa
      721 aacttaaagt tgttagcata tgtccttatg gttgctacat gtctgtatta tactgtgtat
      781 caatactcac tggggctcta ggtgtttcac ataattgctg cagattgaat agctccttgc
      841 tgtgttttaa gcccttgtgg tacttttaag gtaatttcaa atattggttg caatatgatc
      901 ctttttgttg ccatttgatc ttctacctgt agactgacaa ctgctttgtg ataacacaca
      961 attttgaatg taaagtatat tttatataat gaatgccttt cctaaatgtt taaaagtgta
     1021 cataaattaa gtttatgtta atagctcaga tttcatacat gatgcttaga tatttttaac
     1081 atgttcaatg ctactataat ttcaggtcag atacaatgta tatgacttta atgtcttgaa
     1141 ttcaatattt tttttttaag aattgggata aaacttcata agagattttg atgtcttaga
     1201 aggtgctaga tcaagttttt tactttcaat taaatataag ggacatttca gtaaggttgt
     1261 ggtttctaca aactatatat ttattaaggt ttccagagat ctggagatga aatgttacag
     1321 catctcctgc ttttaccata atcctgagag gaagagctat ggcaacattt atatagcaat
     1381 aattgtgaac atgagataca aatgatatta gatactttat tttcagatat ctcattcctt
     1441 gtgagccttt aaaacatatt ttaatgtaag atgaatcttt aaggcttcct taagttatgt
     1501 gtatttcatt gtactcttca tgggaggtga ctccctccct tccttccttc cttccttcct
     1561 tccttccttc cttccttcct tccttcctcc ctccctccct ccctccctcc ctccctccct
     1621 ctctctctct ctctctctct ctctctctct ctctctctct ctctcctctt tcccagaaaa
     1681 atatttttgc tgactgtaat tgctgtgacc atgttacctt cacgcttcca aaacagaagt
     1741 tctgcatagc tgggtactga gtctgctcag acatgaagta ggaagctgcc tgtattgtag
     1801 catttcttcg aggtgtctct ggctgcagtt ttgtatatgt gttctccatg taagtgttga
     1861 ggtttggtgg ccgttgtacc tgagtgctag gacttctgtg gttaagacaa tagggagatc
     1921 tcatacagtg gacccttaga gaatgtggtt gtcatctttg gttcatctca tcagacatac
     1981 ttaagggaag atggcaagac cagagaagaa cagacagaca gatggaccca ttccttagaa
     2041 taaccattta tttaaaagca ataattcaga ttgcatatga gctaataact gggcttttaa
     2101 tagctgattt atcttcaaat taatataatt ttggtggctt gttctttctg aacatctttg
     2161 tttcagcagt cttcagtttt gtgcattaac ttttttaaaa agtttggtaa aggtctttgt
     2221 ttttcaagca tctttgtaaa actgaacttt ctgtaacttc ggaggaaagt gtcttttggg
     2281 cttcactaaa tgtactactt acattctgtt tttttttttt ttttccattt tttattaggt
     2341 atttagctca tttacatttc caatgctata ccaaaagtcc cccttaccca cccaccccca
     2401 ctcccctacc cacccactcc ccccctttgg ccctggcgtt cccctgtacc ggggcacaca
     2461 aagtctgcgt gtccaatggg cctctctttc cagtgatggc cgactaggcc atcttttgat
     2521 acatatgcag ctagagtcaa gagctcaggg gtactggtta gttcataatg ttgttccacc
     2581 tatagggttg aagatccctt tagctccttg ggtacttaca ttctggataa ttccatagtt
     2641 gatcttgtct aggttgcaca agaattcttc ctgtcaaggt actcatagaa agtgatcatt
     2701 acttatgtga gtaaattcag gggatgtggg gaacagctta catggctttt agtggaaaac
     2761 cattatgtgt gttttcttta ttatcataag attgtaagaa aaattaccaa gtgaaaggaa
     2821 aaaaacaata gtgaatttgt ataaaacacc caaataaaag gttaaagata tgttaaaaaa
     2881 aaaaaaaaaa aa
//
