LOCUS       NM_001029987            2485 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus amine oxidase copper containing 1-like 1 (Aoc1l1),
            transcript variant 1, mRNA.
ACCESSION   NM_001029987 XM_144674
VERSION     NM_001029987.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 2485)
  AUTHORS   Lundwall,A., Malm,J., Clauss,A., Valtonen-Andre,C. and Olsson,A.Y.
  TITLE     Molecular cloning of complementary DNA encoding mouse seminal
            vesicle-secreted protein SVS I and demonstration of homology with
            copper amine oxidases
  JOURNAL   Biol Reprod 69 (6), 1923-1930 (2003)
   PUBMED   12930721
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159547.4.
            
            On Feb 22, 2019 this sequence version replaced NM_001029987.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF551616.1, SRR5189676.177028.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1758              AC159547.4         38826-40583         c
            1759-2041           AC159547.4         37756-38038         c
            2042-2174           AC159547.4         37325-37457         c
            2175-2485           AC159547.4         36784-37094         c
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 23.82 cM"
     gene            1..2485
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /note="amine oxidase copper containing 1-like 1"
                     /db_xref="GeneID:243376"
                     /db_xref="MGI:MGI:3618290"
     exon            1..1758
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /inference="alignment:Splign:2.1.0"
     exon            1759..2041
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2174
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /inference="alignment:Splign:2.1.0"
     exon            2175..2485
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2467..2472
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /note="hexamer: AATAAA"
     polyA_site      2485
                     /gene="Aoc1l1"
                     /gene_synonym="Doxl2"
                     /note="major polyA site"
ORIGIN      
        1 ggatgcacat gaggacctga acagcactgt gaactgtgag taaagaccca gagattccag
       61 ctctggcttc agctgcgtaa gggaggaagc acagtcaggg gggataagac aggacttaga
      121 gacaaggtgc tcttgagtgc tggcttggag acagatatac ctaagttctc tcctctcttc
      181 tgctgagttc cagagccatg gggttggcac aaaggagctt ggcactgggc tgcatggcca
      241 tcgtgttggt tctacaggag accatggcag agtaccccag ctggatgttg aatggcaagg
      301 cccaggtgtt ctcagacctg agcatccagg agatggaggc tgtgcacagc ttcctgatgg
      361 gcaggacgga gctggagctg cagccatccg gcacacaggc tttggacaag aattctgtgt
      421 tcctcattga gactctgctg cccaacaaga aggtggtcct agagtttctg aataaaggaa
      481 ccagacctcc tgtgcgggaa gcccgtgtca tcattttctt tagtgcccag gagcacccca
      541 atgtcaccga gtttgctgta gggcccctgc cacagcccat ctacatgaga gaactgttcc
      601 ccaggccaga gaaacatcga tcctgggcat ccagacccat gtccaaagca gagcaaagcc
      661 ttctctacca caaaatcaag gaggccacca cacccttaaa ggggtttttc cttgacacca
      721 ctggcttctc attagaggac tgcaatggcc agtgtctgac cttcacccat gtggcccccc
      781 atagtgtgga gtctagacat cgggccacct ggttcctctt gcagcgcatt gtaaaagatc
      841 gcctgctaca acccacaggt ctggaggtcc ttgtggatca tgggagcaca gatatccgag
      901 actggagagt agagcaggtc tggtataatg ggaagctcta cagcagccca gaggaactgg
      961 ctcagaaata tgcagatgga gaagtggaca cggtggtcct caaggacctg cgtcccaaga
     1021 acacagagct gccacaagtc tttaacaagc ctggtgggaa attcgcagcg cccctcagaa
     1081 aatctgggcc ccatgtgaaa caagccaatg attccagata ccacctagag ggtaacactg
     1141 tgatctacaa agactggagt ttctccttcc agcttcgacc atcttctggg ctgcagatat
     1201 tgaatgtgca cttcaggaat gagtatatag cctatgagat tggcgtgcaa ggtgctatgg
     1261 ctgtgcatag agaaaaaaca cctgcaggag aactgaccaa aaccatggat ctaggctgga
     1321 gcctgggcac tgtaactcac gagttagccc ctggcatcaa ctgtccagag acagccacct
     1381 tcctagacgt catccactac catggcactg atgggcctgt ccgttatcca cgagccctct
     1441 gcctctttga gatacccaca ggggtgcctg ttaggcctac ctttaacacc aactctgcag
     1501 gcaaaatcaa cttcttttca gatgtgatgg gacacaaact ggtgctacgg gcaacctcag
     1561 cgctctacaa ttttgattac atctgggact tcatcttcta tactacgggc acgatctcag
     1621 ccaagatgca tgccacaggt tacatccaca ccaccatcta tacccgtgaa ggattgagag
     1681 aaactcacct gctgactcac cagcttggcc acagccacac ccaccttgtg cattaccgtg
     1741 ttgacctgga tgtggcaggc accaacaaca gcttccacac actgcaggcc aagcagaaaa
     1801 acaccaccaa ctccagcagc ccaagacgcc tggtacagga cgtgatggag aagacacagt
     1861 attcccagga gcgccaggcc accttctcct ttggacaaac tctgccttca ttcctgctct
     1921 ttagcagccc caaaaaggac atctggggat accggcgcag ctatcgctta aagatctact
     1981 ccacatctga gcagaggctg acccctgaaa cccaagagga cttggctttc agctgggccc
     2041 ggtactccct ggcagtgagc aaatactcag actctgaaca gtacagcacc agcatctaca
     2101 accagaatca cccctgggat ccccctgtgg tctttgagga tttccttcag gacagtgaga
     2161 atattgaaga ccaggatttg gtggcctggg tgacagtagg cttctctcat gggccccact
     2221 ctgaagctgc tccatatatg gcctcgtcta ggaacttcgt aggctttttg ctcctgcctt
     2281 tcaacttctt ctatatcact gaaaaacatc cagctacaag tgccacagat atatctgaca
     2341 ctggatccct gggggcaggg tctgcctgat gcctccacta ttcaacttca atgggaccta
     2401 caaccctgtg tcaagagtcc agccccagct cctgctcaac agacccatac ccccacaagg
     2461 acattcaata aatactgaca ttctt
//
