LOCUS       NM_001361916            1617 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ankyrin repeat domain 9 (Ankrd9), transcript variant
            2, mRNA.
ACCESSION   NM_001361916 XM_006516295
VERSION     NM_001361916.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153152.5.
            
            [WARNING] On Mar 1, 2025 this sequence was replaced by
            NM_001361916.2.
            
            On Mar 30, 2018 this sequence version replaced XM_006516295.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK172167.1, SRR10223970.15703.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-201               AC153152.5         122465-122665
            202-381             AC153152.5         123378-123557
            382-488             AC153152.5         123735-123841
            489-1617            AC153152.5         123957-125085
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 60.9 cM"
     gene            1..1617
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /note="ankyrin repeat domain 9"
                     /db_xref="GeneID:74251"
                     /db_xref="MGI:MGI:1921501"
     exon            1..201
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            202..381
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            382..488
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            489..1617
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             538..1518
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 9"
                     /protein_id="NP_001348845.1"
                     /db_xref="CCDS:CCDS26174.1"
                     /db_xref="GeneID:74251"
                     /db_xref="MGI:MGI:1921501"
                     /translation="MPWDTRPGRSANGGPEGPGAARLRVQKQCRKSSFAFYLAVRDQL
                     PVWLLEDIRASEAFHCDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRCALAPP
                     SAGFRCCTAPGPHVALAVRYNRVGILRRILRTVQDFPVEERVRLLDRRGCSRVEGGGT
                     SLHVACELARPECLFLLLGHGASPGLRDGSGFTPLELLLRQLNQDASSAPTKAEAASA
                     TVNAATANTTSSEEVCQRRLLLLDLLVLYTPGGVVGPARCELLGDQLRWQRLLGEDKF
                     QWLAGLAPPSLFVRAMQVLVTTISPGRFPEALDELPLPSFLQPLDLTGKG"
     polyA_site      1610
                     /gene="Ankrd9"
                     /gene_synonym="2500003O20Rik"
                     /note="major polyA site"
ORIGIN      
        1 cctgcccggc cccggccgca ctgcgccgcc cgccgccctc ccctcggcgg caccagcacc
       61 ggcatcggga gacggtgtcg cggcggctca gagtgcagcg ggcgctgcct ccgctcccgg
      121 cgtcgtggga tctctgtctg ctcgcccgtg catggacggc gcgcgctccg gcccgccgca
      181 gggacagggt cgcgcggctt ggagctcctt cctgatgggc aggaaaattg tttgtggata
      241 aaagagccag agccactttc caactctggc tgcgggcggg cgcactgcca gccctgggcc
      301 accactttct tgttgatgag gtttggtgtg ttagagtgaa tacctgcatc tacagaaccc
      361 agggccgcct gcaggaacca gttggaagga cctggctcag gtgtgaaagg agcgcttttt
      421 gaaggttcca gggctgcaga gggttggcac acggaaggct ccagcagatc cagccttctc
      481 tagcacaggt tggtctgggg tggtgtgacc catgctttga gactcccgga ggccagcatg
      541 ccgtgggaca ccaggcctgg acgcagcgcc aacggagggc ccgagggtcc cggcgcagct
      601 cgcttgcggg tgcagaagca gtgccggaag tcatccttcg ccttctacct ggcagtgcga
      661 gatcagctgc cagtttggct actcgaggac atacgtgcca gcgaagcctt ccactgtgat
      721 gagcgggggc gcgctgcggc ctattcgcct tcggaggctc tgctctatgc gcttgtgcac
      781 gaccaccaag cctatgcaca ctacctgcta gctaccttcc cgcggtgtgc actcgcccca
      841 cctagcgcgg gcttccgctg ctgcaccgcg cctgggcctc acgtggcgct ggcggtgcgc
      901 tacaaccgcg tgggcatcct gcggcgcatc ctgcgaacgg tgcaggactt cccagtggaa
      961 gagcgcgtgc gcctcctcga ccgccgtggc tgcagccgcg tggagggcgg tggcacgtcg
     1021 ctgcatgtgg cctgtgagct cgcacgcccc gagtgcctct ttctgctgct tggccacgga
     1081 gcttctccag gccttcgaga tggcagtggc tttacaccat tggagctgct gttgcgccag
     1141 ctgaaccagg acgccagctc agcccccact aaggctgagg cagcttctgc cacggtcaat
     1201 gctgccaccg ccaacaccac ttcgtctgag gaggtgtgtc agcgccgcct gctgctgctt
     1261 gacctgctag tactgtacac cccggggggc gtcgtaggtc cagctcgatg tgaactgcta
     1321 ggagaccagc tacgctggca gcggttgttg ggtgaggaca agttccagtg gctggcaggg
     1381 ctggcgccac cctccctctt tgtccgtgcc atgcaggtgt tggtcaccac tatctcacct
     1441 ggccgcttcc cggaggcctt agatgaactg cctctgccat cgtttttgca gcccttggac
     1501 ctcacgggca agggctagac tcaggggacc ctgacacagt atatggggac agaagtattt
     1561 ttttgagagc attgtacttg gcactttaca tatatggatc gttgactgta cagaggg
//
