LOCUS       NM_029202               1190 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ankyrin repeat domain 7 (Ankrd7), transcript variant
            2, mRNA.
ACCESSION   NM_029202 XM_133002
VERSION     NM_029202.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Lu,Y., Oura,S., Matsumura,T., Oji,A., Sakurai,N., Fujihara,Y.,
            Shimada,K., Miyata,H., Tobita,T., Noda,T., Castaneda,J.M.,
            Kiyozumi,D., Zhang,Q., Larasati,T., Young,S.A.M., Kodani,M.,
            Huddleston,C.A., Robertson,M.J., Coarfa,C., Isotani,A.,
            Aitken,R.J., Okabe,M., Matzuk,M.M., Garcia,T.X. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched
            genes dispensable for male fertility in micedagger
  JOURNAL   Biol Reprod 101 (2), 501-511 (2019)
   PUBMED   31201419
REFERENCE   3  (bases 1 to 1190)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1190)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 1190)
  AUTHORS   Shi,Y.Q., Du,L.C., Wang,Q.Z. and Han,C.F.
  TITLE     Ankrd7, a novel gene specifically expressed in Sertoli cells and
            its potential roles in Sertoli cell maturation
  JOURNAL   Mol Cells 27 (2), 199-203 (2009)
   PUBMED   19277502
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC167438.2, AK015948.1, AK077080.1 and BB019296.1.
            
            On Nov 17, 2009 this sequence version replaced NM_029202.1.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice junction at the 5' end of an exon compared to variant 1. The
            resulting isoform (2) has the same N- and C-termini but is one aa
            shorter compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049731.1, AK015948.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-290               AC167438.2         113825-114114       c
            291-1110            AK015948.1         235-1054
            1111-1186           AK077080.1         1083-1158
            1187-1190           BB019296.1         225-228
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 8.16 cM"
     gene            1..1190
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /note="ankyrin repeat domain 7"
                     /db_xref="GeneID:75196"
                     /db_xref="MGI:MGI:1922446"
     exon            1..410
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..1005
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ankyrin repeat domain-containing protein 7"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 7
                     isoform 2"
                     /protein_id="NP_083478.2"
                     /db_xref="CCDS:CCDS19933.1"
                     /db_xref="GeneID:75196"
                     /db_xref="MGI:MGI:1922446"
                     /translation="MKKFFPFRGKRKTDDSHSHSSEVPISLAKTAPPSLSIGGGYHLR
                     DKHLKKLHKAATIGNEQKLKDYLERKKYNVNGRDKRSRTPLHLACANGYTNIVSLLIE
                     NQCKINVQDSENRTPLIKAVECQQESCATVLLLHGADPNLVDVYSNTALHYAVCGQNI
                     SLANKLLQYKANLEAKNKDGHTPLLLAVAENNENMVKFLLKKGADVNASDKNHRTAIM
                     IALIVEPTSSVKLLLQQDTDLAHKDIYGFTAEEYASFNGFTMYHHITANNENKKKTEQ
                     TAY"
     exon            411..525
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            526..699
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            700..806
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            807..944
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1190
                     /gene="Ankrd7"
                     /gene_synonym="4930532L20Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatatagct gctttggtcc ctggctatag ccaggcaaag attcttgtca gcacacaagt
       61 ctagatttgg tcagatcgag aggcaattgt gaacaaggtg gttgcggcag aggacccggg
      121 ctgttggtta ggattcccag gaacatctta cttagagatc ttaccatgaa gaagttcttc
      181 cccttcaggg gaaagaggaa gacagatgat tcccacagcc actcctcaga agtgcccatt
      241 agcctggcca aaaccgcacc gcccagcctg tccataggtg gaggatatca ccttcgagat
      301 aagcacttaa agaaacttca taaagctgct accattggca atgagcagaa gctgaaggat
      361 taccttgaac gcaagaaata caatgtgaat gggcgggaca aaagaagcag aacacctttg
      421 catttggcct gtgctaatgg atatacaaat attgtctctc tcttaattga gaatcaatgc
      481 aaaattaatg tccaggatag tgaaaacaga accccattga ttaaggcagt agagtgtcaa
      541 caggagagtt gtgctacggt tcttcttctt catggtgcag atccaaatct ggtagatgtt
      601 tatagtaata cggctctcca ttatgctgtt tgtggccaaa atatttcatt agccaataaa
      661 ttgcttcaat ataaagccaa tcttgaagcc aaaaataagg acggtcacac tccgctttta
      721 cttgctgttg ctgaaaataa tgaaaatatg gtaaaattcc ttctgaagaa aggagcagat
      781 gtaaatgcat cagataaaaa ccacagaaca gccatcatga ttgctctgat tgttgaacca
      841 acaagttctg taaaacttct tcttcagcaa gatacggacc tagcccacaa agatatttat
      901 ggatttacag ctgaggaata tgcttcattt aatggcttta ctatgtatca ccatataact
      961 gccaataatg agaacaagaa gaaaacagag caaacagctt actgactgag cagtttttct
     1021 tgttatttta tattttcttc ctacaaagca tacatccttt ttcttccaaa gcaatattta
     1081 aatatggaat taaaatttac ctctgctttg aaattgtaaa tcattttaaa gatcttcatt
     1141 aacattttct gacaacttat gtactaaaaa ttaaaaattc tatggtaaaa
//
