LOCUS       NM_029898               2781 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ankyrin repeat domain 55 (Ankrd55), transcript variant
            1, mRNA.
ACCESSION   NM_029898 XM_907215 XM_920227 XM_920240 XM_920249 XM_920257
VERSION     NM_029898.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK039553.1, AK138273.1, BC152317.1, AK045480.1 and AK021066.1.
            
            On Dec 5, 2009 this sequence version replaced NM_029898.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK045480.1, BC152317.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-346               AK039553.1         2-347
            347-1527            AK138273.1         2-1182
            1528-2255           BC152317.1         1155-1882
            2256-2611           AK045480.1         1890-2245
            2612-2706           AK021066.1         763-857
            2707-2781           AK021066.1         859-933
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 63.73 cM"
     gene            1..2781
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /note="ankyrin repeat domain 55"
                     /db_xref="GeneID:77318"
                     /db_xref="MGI:MGI:1924568"
     exon            1..532
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            533..655
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            656..786
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            787..896
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            897..957
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1086
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1271
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1439
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1440..2104
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2105..2197
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2198..2781
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2511..2516
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2535
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /note="major polyA site"
     regulatory      2756..2761
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2780
                     /gene="Ankrd55"
                     /gene_synonym="C030011J08Rik"
ORIGIN      
        1 gcagtctgcg ctggcggctt tgcacatgct ccgtctggcc ctgtgaatct cactcactca
       61 ttgaggtttc tattggttta aagcgacctt ccagtcgcct cagccgaagc tctgagatct
      121 gcagcatttt cctggcccag atccaaggca ggcacccccg tgaaggctgt cttattttag
      181 ggtttgggat gttttgtctg tctgcttggg ggaagggtat ataatactca cacgtcagtg
      241 ttgatggtga atgggattct gagagtaaca cttcctcccc tgcagaaaga gtgtttttta
      301 tgtctttgca aaggtagcct tgaaggcgcc cggcagatct aacacacact taattctaca
      361 acgggagctg acgccaacga tgctgaagct gactgacgtt ggctgcagtg tgtgaaatgg
      421 tgttttctcc tctccagagc cctgactggg ttttttttgc cgttctgatg gtaaacgatg
      481 agacaggcta ccatggattt cagcacctct tctgtgtttg atcagcacaa aggtgactca
      541 tctgaagaag tcgacctggc aatggtgtat caggcagcat cgaatggaga tgtcaactct
      601 ctgacctccg tcattcggga ggatccgtcc atcctggagt gttgtgacag tgaaggatgc
      661 acgcccttga tgcacgcggt ttcaggacgt caagtggaca cagtgaaatt gctgctaaag
      721 atgggtgcca acattaacac acaggatgcg tatggtcgca ccagtttatg cctggcaacc
      781 tacctgggct ggcttgaagg ctgtgtgagt ctgctcagaa acggtgccaa gcacaacatc
      841 ccagataaaa atggccgcct acctctgcac gctgccactg cagagcctga tgtgaggctc
      901 ctcatagtcc tgctgcagca gtccagcctc agtgagatca accatcaaga cacagagggg
      961 atgacgccac tccattgggc agctttccac aaccggcctc aacacaccca aatgctgttg
     1021 aagaaggggg cagaccccac ccttgtggac aaggatttta aaacagccct ccactgggca
     1081 gtccagagtg gaaatagaat tctgtgctcc atcattctga gccatcggca gggcccgtcc
     1141 attatcaact acgacgacga gagtgggaag acgtgcgtcc atatcgctgc agcttccggt
     1201 ttcggagaca tcatcaacga tttggcaaag gtccccgagt gtaacctgca ggctctggat
     1261 gtggatgaca ggacacccct gcactgggct gcagcttctg gaaaggcaga atgtgtccag
     1321 tcactgctgg atctgggcat ggacagcaac ctaagggaca ttaacgagag cacgcccctg
     1381 gcctacgcct tgtactgcgg tcacacggcc tgtgtccggc tcctttcccg agaaggccga
     1441 gcagagcctg ctaggcctct tccctcccaa aacagccaac cccaaaagaa ggaaggacga
     1501 ttcagcatgc tcaaccaaat cttctgcaaa aacaagaaag aggagcagaa agcccatcag
     1561 aaagaccaga gcagggccag acctaaggag gaggagacct cggaagtcaa tgacatcatc
     1621 gccacctttg acagtgtcgt ggataccaac tgccaaggtc agcctggtga ccaggtggac
     1681 atggttgtct ttaagaagag gacctcggag aattcaaagt atctcttgcc agaaaagaaa
     1741 tccctggccc gcaaggggct cccaccaatc agaacccaga gtctcccacc catcaccctg
     1801 ggcggtcact tcctgacagc ctcccaggga gccgtgtccc atgctggcct gaacgctggt
     1861 cctcagcata ctgcccagcg ttctcagaaa agtcgaagcg aacaggactt attaaataat
     1921 aggactggct gcccggtgtc actagagaat ccttggaagg gtgacaccag gcaggtgttc
     1981 tcctgcaagg cttggaccgt gtcttcttct gataagttac tagacaggct gttcgctggc
     2041 cagcctggtc accaggagct ctctgggcca ccacatcttc ctcatctaca taatccctca
     2101 tcaggacaag ctcttcagca tctctcccca aacagaccta aaatcagaga tctccccttc
     2161 actcggaaca gccttgcacc tctgccagac caaaaatttc tatctggaga acccctgaga
     2221 acaaaccggg tgcttccagc aattccaagc cagaggggac atgacccatc accagctgga
     2281 gagagccaga ggggacatga cccaccacga gctgaagaga gcgggggttc ctccagtccc
     2341 acccatgatg aaaactaact acagctcgct ctctgtggaa atggagaaga tatatatttt
     2401 tcgacttccc aagggtgaga ttactctagt ttatatgagc aaagtcttaa tttagtaagc
     2461 tgcattctac aagccattca tggttttcta attcaaggtt ccttatttca aataaataca
     2521 ctccctaaat actcacttag aatcttcagg cgtgcaaaca tcaccaagtc tattagtttc
     2581 tgtgacgccc tacaaactgt aattgagaaa caaaatacac tcctggagga ggatttaggt
     2641 atgtttcact tatggttgtg ccatgtttgc tgtttggtct ggttcttttt tttttttttt
     2701 ttttttccct cttatttggt gattttatgt atttttttaa gtgtatgctt tgctgaataa
     2761 aaaaaaaata agaagaaaag c
//
