LOCUS       NM_027799               3493 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus ankyrin repeat domain 40 (Ankrd40), transcript variant
            1, mRNA.
ACCESSION   NM_027799
VERSION     NM_027799.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Mohan,R.A., Bosada,F.M., van Weerd,J.H., van Duijvenboden,K.,
            Wang,J., Mommersteeg,M.T.M., Hooijkaas,I.B., Wakker,V., de Gier-de
            Vries,C., Coronel,R., Boink,G.J.J., Bakkers,J., Barnett,P.,
            Boukens,B.J. and Christoffels,V.M.
  TITLE     T-box transcription factor 3 governs a transcriptional program for
            the function of the mouse atrioventricular conduction system
  JOURNAL   Proc Natl Acad Sci U S A 117 (31), 18617-18626 (2020)
   PUBMED   32675240
REFERENCE   2  (bases 1 to 3493)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   3  (bases 1 to 3493)
  AUTHORS   Kambouris,M., Triarhou,L.C., Dlouhy,S.R., Sangameswaran,L., Luo,F.,
            Ghetti,B. and Hodes,M.E.
  TITLE     Novel cDNA clones obtained by antibody screening of a mouse
            cerebellar cDNA expression library
  JOURNAL   Brain Res Mol Brain Res 25 (3-4), 183-191 (1994)
   PUBMED   7808216
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645965.8.
            
            On Feb 13, 2007 this sequence version replaced NM_027799.1.
            
            CCDS Note: The coding region has been updated to represent an
            alternative 3' splice site, resulting in a longer and distinct
            C-terminus that is better supported by available transcript and
            homology data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849374,
                              SAMN00849375 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-387               AL645965.8         10359-10745
            388-536             AL645965.8         16259-16407
            537-1016            AL645965.8         16786-17265
            1017-1198           AL645965.8         20698-20879
            1199-3493           AL645965.8         21911-24205
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 58.9 cM"
     gene            1..3493
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="ankyrin repeat domain 40"
                     /db_xref="GeneID:71452"
                     /db_xref="MGI:MGI:1918702"
     exon            1..387
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..1345
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat domain-containing protein 40; granule cell
                     antiserum positive 15"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 40
                     isoform 1"
                     /protein_id="NP_082075.2"
                     /db_xref="CCDS:CCDS25253.2"
                     /db_xref="GeneID:71452"
                     /db_xref="MGI:MGI:1918702"
                     /translation="MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNG
                     WTCLHWACKRNHGQVVSYLLQSGADREILTTKGEMPVQLTSRREIRKIMGVEEADEEE
                     EIPQLKKESELPFVPNYLANPAFPFIYTPAAEDSTQLQNGGPSPPPVSPPADSSPPLL
                     PPTETPLLGAFPRDHSSLALVQNGDISAPSAILRTPESTKPGPVCQPPVSQNRSLFSV
                     PSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIE
                     LDRQELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLMI
                     SDNNFLFRNAASTLTERPCYNRRASKLTY"
     exon            388..536
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /inference="alignment:Splign:2.1.0"
     exon            537..1016
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1198
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..3493
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1545..1550
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="hexamer: AATAAA"
     polyA_site      1569
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="major polyA site"
     regulatory      3010..3015
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="hexamer: AATAAA"
     polyA_site      3038
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
     regulatory      3465..3470
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="hexamer: ATTAAA"
     polyA_site      3490
                     /gene="Ankrd40"
                     /gene_synonym="1110011C06Rik; 5530600A18Rik; Gcap15"
                     /note="major polyA site"
ORIGIN      
        1 gaatagggtc ccccggagcc ggccttcgga ggcgcggtgg gggaggaggc ctgggcctgc
       61 ggggccgcga gcagccaggg agctgtcggt gggcgggcgg gcgcacgagg ccctgggccg
      121 ggcgcgggcg gaggcgcgag cggggcgggc gagcccggcg ctccctcccc atggccggga
      181 gccggccgcg gaggcggcgg cggcgctgac aggctcgggg cggggcggcc cggggcccgg
      241 ggccctgggg aagatgagcg ccctcctaga gcagaaggag cagcaggaga ggctgcggga
      301 ggcggcggcc ttgggggaca ttcgggaggt gcagaaactg gtggagagcg gggtggatgt
      361 gaactcgcaa aatgaggtca acggctggac ctgtttacac tgggcatgta aacgcaacca
      421 tggacaggtg gtgtcctacc tgctacaatc aggagctgac agagagattc ttacaacaaa
      481 aggggaaatg ccggtacaac taacatcaag gagagaaatc aggaagatta tgggagtgga
      541 agaagccgat gaggaggagg agatccctca gctgaagaag gagtcagaac tgccctttgt
      601 ccccaactat ctggccaacc cagctttccc ttttatctac acccctgcag cagaagactc
      661 cacccaattg cagaatgggg gcccctcccc acctccagtg tcacctcctg cagatagctc
      721 acctccattg ctccccccca cagaaacccc tttgctaggg gcctttccta gggaccacag
      781 ctctttggca ttggtccaga atggtgatat ttctgccccc tctgccatac ttagaacacc
      841 agaaagcaca aaacctggtc ctgtctgtca gccaccagtg agtcagaacc gctccctgtt
      901 ctctgtccca tccaagcccc cggtgtctct ggagcctcag aacgggacgt atgcaggccc
      961 ggcgccagca ttccagccat ttttcttcac cggagcattt ccatttaata tgcaagagct
     1021 ggtactcaaa gtgaggattc agaatccatc tcttcgtgaa aatgacttca ttgaaattga
     1081 actggatcga caggaactca cctaccaaga actgctgaga gtgagctgct gtgagctggg
     1141 tgttaatcca gaccaagtgg aaaagataag aaagttaccc aacactctgt taagaaagga
     1201 caaagatgtt gcccgactcc aggacttcca ggagctggaa ctggttctga tgataagtga
     1261 caataatttt ctgtttagaa acgctgcatc cacactgact gagaggcctt gctataaccg
     1321 gagagcttca aaactgacgt actgatgcag cagggacttc atcactgagt actgtgacag
     1381 tatgtgtcat ctctgggcca aaggacaagc cattgatccc aaagcctcgt atgcccacca
     1441 gggcccctgg tgccactgcg tagtgttcac taacaccccg cctcaccagg caggagcccc
     1501 gaccccccag cagcggtgcc actcttccaa gcctcttggt gcacaataaa ctattgctga
     1561 atctttgaac agctggaaag tagtcttgag aggcagaagc cgaaggttcg agagccagtg
     1621 tttaatgtgc aggatctaga gagttgtcaa agcagaagct gagagcgcag acctatttct
     1681 agccactcct gttgacagtg cgcctgaagg gccgggcgtg cctctcttgg tgttgcatgc
     1741 tcgtgacact caagaaattt tgaactgatg agggaggaag actggggaaa gaaagaaagc
     1801 acacacaggt actggacaga gggattctgg tatgacctgt ggctgtgagg tctcatatag
     1861 catatttata aatgttactc aggtttaaag tatttaaaat atagttacct aattgtaaat
     1921 aggctgttaa ccaaaagagc ttcccctccc ccagttttct tttatgacca ctgatgactg
     1981 cggctgtctc gacagtcatc ttcacatctg ctcccctcca cagtcactag agggctctct
     2041 aatgctttct aaaggagcca ccacctgctc cgtggccact cctgtcaccc tgtctaattg
     2101 caccattcaa gaagagcaca ggcgctgttg gacaaggcgc ccaccactct cactccctcc
     2161 aggaacaaag agcagctttt gagcccggac ttgttgctgg tttaaaggtt attgtgggaa
     2221 actgaactaa aggagttagc atctttattt ttgtatcaaa gataaaggtt attttgaaaa
     2281 ttattagggt ttttacataa ctctggaatc tgttgctttt ataaacaaat tgttcaattt
     2341 taggaattcc ccgttacctc cacagtcagt tgtgagggcc tgattagact ctggagcatg
     2401 gtgtacgact cttctccaag agcgcatgca agagtctccc cccctcagcc tcattaaaga
     2461 cgaaaagcca cctcggtttg cttaacttta gatagatagg acctggcgca cacaagagca
     2521 ggagaacagg gctggagcag ctgttgacgg gacccctgct gtcttaagct tttccccata
     2581 gtgcctatag tttccaaaga aacttaactt cctgggtatt aacttaattt tattagaaca
     2641 ctgcagttga ctgaaaacat gcagatgcac tggaagagaa ccttgtgctg aggtaatggc
     2701 ctcccactgc cgcctgagtg ctgaaatgag cttgaggtgt tcttcaaagc cagtgtcact
     2761 gtgtgggtca ctgtgaggtg actgcatggt gcctggccct ggcacagctg gtgacttccc
     2821 ttgtagagtg tttgcgtagt ggagtggctg tggctcacca ccccctttcc caagtgcttt
     2881 aatgaagaca cctcccttgt gtttcaacca atcagaaact actttaacta aatgtactaa
     2941 cctttttccc tcctaatttg ctttgaaaaa gtttagtaat tcaattaagc gtgattctat
     3001 cttagaagaa ataaactcag tattaattca tgtctaaatc actggggttg agactccttc
     3061 agcctccctg gttgattaga gattctgaga agcagtagag ctggctggga ggtgggctac
     3121 agaggagcaa gcaagcactt cagactgacc aaaggttgtg gtggcccaca tggctctgcc
     3181 cagtgtcctg tgctttgcca cagtcctctg gggtcagtgt ctcgggcagt gggatggaac
     3241 tgtgtgattg ctcttaggtg agttccgagt cttaatctat gcattcagag aaatattttt
     3301 atatgcgttg tgtaatttat aacaaggggt tttcttttag gctttgttaa ctgaatgctc
     3361 ctctcctcct ccactgcata gttaaagcat gtgttcacac tgtgtaaaca ttcacagaag
     3421 acttttcctc gtgtgttgtt gactctttaa acataacagg tattattaaa attaactgtt
     3481 aactgaccca gcc
//
