LOCUS       NM_026241               1855 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus ankyrin repeat domain 39 (Ankrd39), transcript variant
            1, mRNA.
ACCESSION   NM_026241 XM_129827
VERSION     NM_026241.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB858219.1, BC119100.1, AK042896.1 and CD775078.1.
            
            On Jul 15, 2015 this sequence version replaced NM_026241.3.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK018681.1, AK042896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                BB858219.1         4-24
            22-650              BC119100.1         1-629
            651-1238            AK042896.1         601-1188
            1239-1855           CD775078.1         1-617               c
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 15.32 cM"
     gene            1..1855
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="ankyrin repeat domain 39"
                     /db_xref="GeneID:109346"
                     /db_xref="MGI:MGI:1914816"
     exon            1..167
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..619
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat domain-containing protein 39"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 39
                     isoform 1"
                     /protein_id="NP_080517.1"
                     /db_xref="CCDS:CCDS14883.1"
                     /db_xref="GeneID:109346"
                     /db_xref="MGI:MGI:1914816"
                     /translation="MAAPHLCADGSCCSHPSAVPGVQQTLEEMDFDRGIWSAALNGDL
                     GRVKYFIQKATDPSQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALH
                     RASYCGHTEIARLLLSHGSNPWLVDNDGMTSLHKAAEKGHEDICSLLLQHSPALKAVR
                     DRKARLACDLLPCNSGLWDLLAS"
     exon            168..271
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            272..475
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            476..1839
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      848..853
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      871
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="major polyA site"
     regulatory      959..964
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="hexamer: AATAAA"
     polyA_site      982
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
     regulatory      1818..1823
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1839
                     /gene="Ankrd39"
                     /gene_synonym="9130416N05Rik; C030004B10Rik"
ORIGIN      
        1 gtggtcaacc tgggacggag gggtgggcat ttcgtaggag cgcttggctg cagtcccggc
       61 cgccgggatg gcggcgccgc acctttgcgc ggatggctcc tgctgctctc accctagtgc
      121 ggtgcccggg gtacagcaga cgctggagga gatggacttc gacaggggaa tctggtcggc
      181 tgccctgaat ggagacctgg gccgtgtgaa gtatttcatc cagaaggcca cagaccctag
      241 ccagccagat tctgccggct acaccgcact gcactacgcc agccgcaacg ggcactatgc
      301 tgtttgccag tttctgctgg aaagtggagc gaagtgtgac gcccagaccc acgggggcgc
      361 cacggctttg caccgggcca gctactgtgg gcacacggaa atcgcacggc tgctgctatc
      421 ccatgggtcc aacccctggc tggtcgacaa tgatggcatg accagtctgc ataaggctgc
      481 ggagaagggt cacgaggaca tttgctccct cctgttacaa cacagcccag ccctgaaggc
      541 cgtccgggat cgcaaagcac gcctagcatg tgacctgctg ccctgcaaca gtggcctgtg
      601 ggacctgctg gccagctgag gctccacctc ctgtctctgg ctgcccttga agggtacaca
      661 gactagctct ccacacccct gccttgctca gcgtcatgct gccgggacca gggccagatt
      721 gcccagaaga gcccctcctg gccagtgtgg cagccgtagg gaggctgggg agggctgaag
      781 gcttgtgagt ctggacaggt gatcatataa gttagtccat gtacagacac atagccgttt
      841 ggaagaaaat aaagcttata tcttgatgtt atcacatggg caaagataaa tttcaaaaca
      901 cagttttcta aaggtaaaaa caacactttg aagtatcaga agaaaacctg gagtgtgtaa
      961 taaaagctgt ttgctggctg aatgagctgg gggcaggttt cttttagaac agcacccgtg
     1021 tttagaacag aaccgtgaaa aggattgcct cacggttgct ctggggaccc aggaagtctg
     1081 tggacagatg ccctaagtga gcacactcac tccattacaa acagcagggg agagtaccca
     1141 ctcactgctc agcctggcct ggtaatgcag gcctcacata ccagctgttc atgaggctgc
     1201 agaggagttc aaggccagcc tgggcaacag gtaaagggga tataggttag cgatagaatg
     1261 cttgcctgac atgcaaaagc cctgtgttca atccctacta tcgtggggaa gcagtgtggt
     1321 ccccaaagtc taaccaacac tggcctttat tcccagtgtt cagttctact agtctgacct
     1381 gtatgaagtg taactgctag gtatggctgc ccacaccttt aatcccagcg tctgaggtag
     1441 gaagatctct cttcgagctc caggccagcc agagctacag agaccctgtc tccttaacgc
     1501 catgtaatta taactgcttt tctgtttgtt tggcattgat tgctagtcgg gctgcacacc
     1561 tgtctttgac tttcctattt atgcccattc gaaatgtttt tgttcttgat atgtagccaa
     1621 ggctagcctc caactttgga gccctcctca ggccccagct tcctgaatgt tgggattgta
     1681 ggtatgtatc accacgtgtg gcttgctatg tttttatcag ttcgcaggaa ctttatatta
     1741 atggatattg agcctttgct ctgggtgtgt ttgtatatag agagaaacat atatagtgta
     1801 catactatct aatgtatatt aaaatgttct ttcatgcaaa aaaaaaaaaa aaaaa
//
