LOCUS       NM_023816               4771 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ankyrin repeat domain 48 (Ankrd48), transcript variant
            2, mRNA.
ACCESSION   NM_023816 XM_125967 XM_988943
VERSION     NM_023816.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4771)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4771)
  AUTHORS   Anway,M.D., Li,Y., Ravindranath,N., Dym,M. and Griswold,M.D.
  TITLE     Expression of testicular germ cell genes identified by differential
            display analysis
  JOURNAL   J Androl 24 (2), 173-184 (2003)
   PUBMED   12634303
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662876.23 and AL669935.7.
            
            On Jun 20, 2019 this sequence version replaced NM_023816.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN00849384 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-446               AL662876.23        198041-198486
            447-561             AL662876.23        199414-199528
            562-735             AL662876.23        199643-199816
            736-842             AL662876.23        202584-202690
            843-980             AL662876.23        203996-204133
            981-1050            AL662876.23        206941-207010
            1051-1136           AL662876.23        212315-212400
            1137-1203           AL662876.23        225071-225137
            1204-1326           AL669935.7         5242-5364
            1327-1430           AL669935.7         5456-5559
            1431-1488           AL669935.7         7484-7541
            1489-1595           AL669935.7         12657-12763
            1596-1654           AL669935.7         13652-13710
            1655-1691           AL669935.7         16607-16643
            1692-1761           AL669935.7         18210-18279
            1762-2841           AL669935.7         26459-27538
            2842-2935           AL669935.7         28834-28927
            2936-3006           AL669935.7         30271-30341
            3007-3366           AL669935.7         33160-33519
            3367-3452           AL669935.7         37232-37317
            3453-3623           AL669935.7         41812-41982
            3624-3657           AL669935.7         42966-42999
            3658-3730           AL669935.7         45019-45091
            3731-3926           AL669935.7         58775-58970
            3927-4101           AL669935.7         60485-60659
            4102-4293           AL669935.7         85423-85614
            4294-4771           AL669935.7         87272-87749
FEATURES             Location/Qualifiers
     source          1..4771
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 3.71 cM"
     gene            1..4771
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /note="ankyrin repeat domain 48"
                     /db_xref="GeneID:76389"
                     /db_xref="MGI:MGI:1923639"
     exon            1..446
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..4491
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ankyrin repeat domain 36"
                     /codon_start=1
                     /product="ankyrin repeat domain 36 isoform 2"
                     /protein_id="NP_076305.2"
                     /db_xref="CCDS:CCDS36103.1"
                     /db_xref="GeneID:76389"
                     /db_xref="MGI:MGI:1923639"
                     /translation="MKKIFKGHSPWGFLSFRHAENQEPPRYLTGYMPVKRIHKAASVG
                     DIPQVQKMLEFGDIDVNVTDRKKRTALHYACAHGQSEMVSLLLWYDCNIEARDREEST
                     ALIKATQRQHEICVKILLENGADSNAVDIHQNTSLHYTVYNKDTTIAAKLLAFNADTE
                     VKTKNGYTPLILAVLENKQEMVELLLQAAANINALDNCKRSALIHAVRTQSKNMISLL
                     LQQGANASLVDIYGATAQSYAVFETFQVLSQGPGPRPELTTKEARHSFDTKDGLVPCS
                     PRFKEDNKRMEENTDAVDELGSFAHRPSNSEPIEEEDEPSLSTKPPVVQSPVLTESNL
                     WAGYPADWPEPIKFSRQPAVYNPTEWREDMESRSVPLESKQQGAALPGKEANIQTQQQ
                     LQTRAFKEPGANDPDLPSRENAKDELVSLLAPLEEKKPQMKEFPVTEAAKFQTDVKLE
                     REGVLEFEEKGLEICQDSNLEAAESTESYSILRFAKPDVSDPEPTARKDEYKLDTKDE
                     DRLERHLLAPKASQHQAKQTSPPPVQLQERSQGPEMDTASDEEDTSGLSKSAKGQILG
                     GKLTLGENPEGKETVQCVINKPTQKGDEIYEDVNANVYLKEERPPDVSGKTHLTSDPT
                     TLAYNMFDCGDRDVSAALVSVTLQTSPRQEEGGLGNAFPSPSSSQDVDYSGQSLTKFP
                     LMRNKLDCENNASELGESFHKRKEKSSKNIESRKVKGKCPEVRMGEKQEGHEFKSQSQ
                     KTMKPKRTDWQLDIRHMLKSSDANRLSNAKERSHVTEVKSWGDSALASDMYRKSKGTQ
                     DLFLKPLPCKGNFEAPARTLGTASDAPPGGPTTRAFADEELRGRLSDSEFRILEEEIL
                     AWEKVHLESESVSENLLNKCEGIISDATDQQGRYLDMEQATEVDSEGTSQLEQKNLDS
                     SENTQPSNPDLSKTCPQAQSAPADPTTLIQPLPEEESKQTHPPSLRLKKMSEDLEINT
                     KDDKECAPGHPEVPSVKAHGRESLTGDRRGQNRESKQSCPELQHTAADGLESICPVED
                     PLPGGCRSHFKVEEVSRKQQSMDLEVSELSPADEKDEPARSVPDLCIKDAKGSEKEAW
                     SPREPVVTPEFEKSPPAGADLLLLKDGHLLTKMDRVEGRLTKREAKEKHKTKSQVNEM
                     EEASHGSEPRAPAPGWGSDSPLKLWNTTHSDERLIELKNSHCELLTRKPGKMGNMREQ
                     TKVKKTKTWSQHKEVAWDKLCTLRFPLKQDEKQENAELTFQQKKPQLQREKEQCGGSV
                     EWTQHSEIRTVIAELKALEKDLRQFHNLKESWETTYYKYLHMVVKLQFIEQELIGIKT
                     EQKKCRHLLENQKNLEEEVLHLKSWVRESEIQARDQNNIENLRDTNDAAMISQMDLRI
                     KNMESQLATRGAQRRLLEEGCLDVSTAMQKRVAWPSP"
     exon            447..561
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            562..735
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            736..842
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            843..980
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1050
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1136
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..1203
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1326
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1327..1430
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1488
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1595
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..1654
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1691
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1761
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            1762..2841
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            2842..2935
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            2936..3006
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3007..3366
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3367..3452
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3453..3623
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3624..3657
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3658..3730
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3731..3926
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            3927..4101
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            4102..4293
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     exon            4294..4771
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4740..4745
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /note="hexamer: ACTAAA"
     polyA_site      4745
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /note="major polyA site"
     polyA_site      4771
                     /gene="Ankrd48"
                     /gene_synonym="1700008J08Rik; 1700012M14Rik; Ankrd36; GC3"
                     /note="major polyA site"
ORIGIN      
        1 agtcctgcca actgcctaag aggtggaggg atgctaaacc ttggggctct tttgtgggcg
       61 catcctggcg agattctgag acttggttgg ctctcttttg ggactggctg gcggtggcta
      121 agactgggac ttgaaagaac tggtttgctg tgagcaccga ggttgttact gggagggagg
      181 aaggcgttat aaacactgag ttttggaggg gtagagatag ggtgaagggc cacagtctga
      241 gccatgaaga agatcttcaa gggtcactcg ccttggggct ttctgagctt taggcatgct
      301 gagaaccaag aacctcccag gtacctcact gggtacatgc ctgtgaaaag gatccacaaa
      361 gctgcaagcg tgggggacat accccaagtg cagaagatgc tcgaatttgg ggatattgac
      421 gtgaacgtta cagaccggaa gaaaaggact gctcttcact acgcctgtgc tcacggccag
      481 tcagaaatgg tgagcctctt gctgtggtat gactgcaaca tcgaagcccg agaccgagag
      541 gaaagcacag ctctgatcaa ggccacacag cgccagcacg agatctgtgt gaagattctt
      601 ctagagaacg gcgccgactc caacgccgtc gatatccatc agaacacctc cctccactac
      661 acggtctaca acaaggacac caccatagcc gccaagcttc tggcattcaa tgcagacacc
      721 gaagttaaga caaagaacgg ctacacgccg cttatacttg cggtgctaga aaacaaacag
      781 gagatggtgg aactcttact gcaggctgca gccaacataa acgccctgga taactgcaag
      841 aggtccgccc ttatacatgc tgtgagaact cagtctaaaa acatgatcag ccttcttctc
      901 cagcaaggcg ccaatgcatc tttggtggac atctatggag ctactgcaca aagttacgct
      961 gtttttgaaa cctttcaagt gctttcccaa ggccctggtc ccagacctga gctaacaaca
     1021 aaagaggcca gacacagttt tgataccaag gatggccttg taccatgttc accccgcttc
     1081 aaggaagaca acaaaaggat ggaggaaaac acagatgcag ttgacgagct ggggagcttt
     1141 gcccacagac ctagtaactc tgagcccata gaagaagaag atgaacctag cttgagtacc
     1201 aagcctcccg tggtccagtc tcccgtgctc accgagtcca acctctgggc tggctatccg
     1261 gcagattggc ctgaacccat taagttctcc aggcagccag cagtctacaa cccaaccgaa
     1321 tggagggaag acatggaatc ccgatcagtt cctctagaga gcaaacagca gggtgcagcc
     1381 ttgccgggaa aggaggcaaa catacagaca cagcagcagc tgcagaccag ggctttcaag
     1441 gagcctggtg ccaatgaccc tgaccttcca tcaagagaga atgctaagga tgaattggtg
     1501 tcacttttag cccctctaga ggaaaaaaag ccacaaatga aagaatttcc agtaactgaa
     1561 gctgccaagt tccagacaga tgtcaagctg gagagagaag gtgttttaga atttgaagaa
     1621 aagggacttg aaatttgcca agacagcaat ctagaagcag ctgaaagtac tgagtcctat
     1681 tcaattctaa ggttcgccaa acctgatgtt agtgacccag agcccacagc aagaaaggat
     1741 gaatataagc ttgatacaaa ggacgaggat aggttagaga ggcatcttct ggcacccaag
     1801 gcgtcccagc atcaagccaa gcagacgagc cctccacctg tacaacttca agaaagatct
     1861 caggggccag agatggacac ggcttctgat gaggaagata cgtctggact ttcaaaatcc
     1921 gctaagggcc aaatacttgg gggaaagttg acattaggag aaaacccgga gggtaaagaa
     1981 actgtacagt gtgtcattaa caagccaacg cagaagggtg acgagatcta tgaagatgtt
     2041 aacgctaatg tttacctcaa ggaagagcga ccacctgatg tctcaggaaa aactcacctg
     2101 acgtcggacc ccactaccct ggcctacaat atgtttgatt gtggcgacag agatgtgagc
     2161 gctgcgctgg tctctgtaac actgcagacc tctcccagac aggaggaagg tggccttgga
     2221 aatgcctttc catctccctc gtcctctcag gacgtggact acagtggcca gtcacttact
     2281 aagtttccct taatgagaaa taaattagac tgtgaaaata acgcatctga attgggagaa
     2341 tcttttcaca aaagaaaaga gaaatcttct aaaaacattg aaagcagaaa ggtaaaaggt
     2401 aagtgcccag aagtacgtat gggtgaaaag caagaaggcc atgagttcaa gagccagtcg
     2461 caaaaaacta tgaaaccaaa acgcaccgac tggcagttag atatcagaca catgctgaag
     2521 tccagtgatg ccaacaggct ttcaaacgcc aaagaaagga gtcacgtgac cgaagtaaaa
     2581 agttggggtg attctgccct tgcaagcgac atgtacagga aaagtaaagg cacacaggac
     2641 ctgttcctga agccactgcc ctgcaagggc aattttgaag ccccagcgcg caccttggga
     2701 accgccagtg atgcgccccc tggtggccca acaactagag ctttcgcgga tgaagaactg
     2761 cgaggcaggc tatccgacag tgagttcagg atattggagg aagagatcct ggcctgggag
     2821 aaagtccacc ttgaaagcga gagtgtctct gagaatctgc taaacaagtg tgaggggatt
     2881 atatctgatg ccacagatca acaagggcga tatctagata tggaacaggc aacagaagtg
     2941 gattcggagg ggacatcaca gctggaacaa aagaatcttg acagcagcga gaatactcag
     3001 ccgtcgaatc cagacctctc aaagacgtgc ccacaagccc agagcgcacc tgcagatcca
     3061 accacgctga tccagcccct gcctgaggag gagagcaagc agactcaccc cccatctttg
     3121 cgtctcaaaa aaatgtctga agatcttgaa ataaacacga aagatgacaa agaatgtgca
     3181 ccaggacatc cagaagttcc ttcagtgaaa gcgcatggga gagagtctct cactggagac
     3241 aggagagggc agaacagaga gtcaaagcaa agctgccctg agctgcagca cacagccgcc
     3301 gatgggctgg aaagcatttg tcccgtggag gatccacttc cgggtggctg tagaagtcac
     3361 ttcaaggttg aagaagtaag caggaagcag cagagtatgg acctggaagt ctcagagctg
     3421 tctcctgctg acgagaaaga tgaacctgct aggagtgttc ctgacttgtg tataaaagac
     3481 gcaaagggca gtgagaagga agcatggagc ccccgcgagc ctgtggtcac accggaattt
     3541 gagaagtccc ctccagcagg tgctgatctg ctactactga aggatggtca ccttctcact
     3601 aaaatggatc gggttgaagg aaggctgaca aagagagaag ctaaagaaaa gcacaagacg
     3661 aaatcccaag taaatgaaat ggaagaagct agccatggaa gtgagcctcg tgcgccagcc
     3721 ccaggctggg gttctgacag cccattgaag ctctggaaca caactcactc cgatgaaaga
     3781 ctgatagagc tgaagaatag tcactgcgaa ctgcttacaa gaaaacctgg gaaaatggga
     3841 aatatgagag aacagacaaa agttaaaaaa acaaaaacct ggtcacagca taaagaagtg
     3901 gcatgggaca agctctgcac tctgaggttc cccttaaaac aagatgagaa acaagaaaat
     3961 gctgagttaa cgtttcaaca aaagaagcca cagttacaaa gggaaaagga gcaatgtggt
     4021 gggagtgtgg agtggactca gcactctgaa atcaggacag tgatcgcaga actgaaggcc
     4081 ctagaaaagg acctgagaca gtttcacaat ctgaaagaaa gttgggagac tacatattac
     4141 aaatacctac acatggtcgt aaagcttcag tttatcgagc aggagctgat agggatcaaa
     4201 acagaacaga agaagtgtag acacctgctc gagaaccaga agaacttgga agaagaagtg
     4261 ctccacttga aaagctgggt gcgggagagc gagatccaag caagagatca aaacaacatc
     4321 gaaaatttaa gagacaccaa tgatgcagca atgataagcc agatggatct cagaattaaa
     4381 aacatggaat ctcagctagc cacacgggga gctcagcgac ggctcctgga ggagggatgc
     4441 ttggacgtca gcaccgccat gcagaagagg gtagcctggc ccagcccgtg agaacagagc
     4501 cgggtgagca agccaaagag agtccaggga aatagcaaag ctcgttggtt tgtctctgct
     4561 gcagggtgca gacctcacag ctgactcgga gttgggaaat gaatgtgcac ttgaactgct
     4621 gttcgaggag gccttggctt cttccccttt tcagtctgga tttctgtggc cttttaccct
     4681 ctaatgttct catgtagcta acctgattag tactataacg ctttctaaat atggccttta
     4741 ctaaactact tctccatttt attaattgga a
//
