LOCUS       NM_001164441            7498 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus ankyrin repeat domain 33B (Ankrd33b), transcript
            variant 3, mRNA.
ACCESSION   NM_001164441
VERSION     NM_001164441.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7498)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   2  (bases 1 to 7498)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 7498)
  AUTHORS   Yoshida,S., Mears,A.J., Friedman,J.S., Carter,T., He,S., Oh,E.,
            Jing,Y., Farjo,R., Fleury,G., Barlow,C., Hero,A.O. and Swaroop,A.
  TITLE     Expression profiling of the developing and mature Nrl-/- mouse
            retina: identification of retinal disease candidates and
            transcriptional regulatory targets of Nrl
  JOURNAL   Hum Mol Genet 13 (14), 1487-1503 (2004)
   PUBMED   15163632
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC115735.8 and AC123917.25.
            
            Transcript Variant: This variant (3) represents the longest
            transcript and encodes the longest isoform (3).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK156757.1, SRR10223970.17374.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-721               AC115735.8         174300-175020
            722-851             AC123917.25        144445-144574       c
            852-992             AC123917.25        124351-124491       c
            993-7498            AC123917.25        110838-117343       c
FEATURES             Location/Qualifiers
     source          1..7498
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 12.76 cM"
     gene            1..7498
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="ankyrin repeat domain 33B"
                     /db_xref="GeneID:67434"
                     /db_xref="MGI:MGI:1917904"
     exon            1..721
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             368..1828
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="isoform 3 is encoded by transcript variant 3;
                     ankyrin repeat domain-containing protein 33B"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 33B
                     isoform 3"
                     /protein_id="NP_001157913.1"
                     /db_xref="CCDS:CCDS49589.1"
                     /db_xref="GeneID:67434"
                     /db_xref="MGI:MGI:1917904"
                     /translation="MVLLAGPGPEGGGTRCLSPQSPTPPRSEQTGEDPADYEEYEDFS
                     SLPDTRSIASDDSFYPPGGEEEYGSVSAESVPEGVPEAATLLRAACANDVGLLRALVR
                     RGPSSEEVRETDRNGRTGLIVACYHGFVDTVVALAECPHVDVNWQDSEGNTALITAAQ
                     AGHVTITNYLLNYFPGLDLERRNIFGFTALMKAAMQGRTECVRALMMAGADVQARDPR
                     RGLSPQEWAAYTGRAEAVRVIQRLMERPCPEQFGDKYKLELPLPAEAVLKKSGSKNCL
                     QRFTAFLRSTLTSRSSGQSLEDGGVLDHMVRMTTSLYSPAVAVVCQTVCPENPPCVGK
                     RRLAVQEILAARGNLNAQAQDSNKVECSEPQSQILETPRASSRSPKSPAASRSTPAPV
                     TRKASLLPLQLLRRSSVRPGVVVPRVRISKAPAPTFQPERAASKGNTKDSIYLQIPKW
                     RYKEAKEEKRKAEEAEKKRQAEAQKEKRAPRWRKRT"
     exon            722..851
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            852..992
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            993..7498
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2285..2290
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2314
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="major polyA site"
     regulatory      4863..4868
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      4885
                     /gene="Ankrd33b"
                     /gene_synonym="0610012A05Rik; 3021401C12Rik;
                     5730557B15Rik"
                     /note="major polyA site"
ORIGIN      
        1 cccgaacaag cctttccctg ctcgggacaa agtggccgtg tggtggtggc acggtttgga
       61 gaggatctct gatgctcccg ggactctaac cgggaaggcg ccccgcccgc tgcctcgctt
      121 tcaccccgcc cggcggggca gggaaagccc ccggcggctc ctcccaccca aggggctttt
      181 ctccagtcgc cagtgacttt gcaccgggag cgcagccgcc tggagctgct ttctgccagg
      241 ctggagcgcg cggggctcct gctcttctgc gaacgcaggg gccaagggtc ggtgacctcc
      301 gggcgcgccc cgttttcgtg tcccctaatt cgagccccag cccccggccc gcgccttggc
      361 ctccagcatg gtgctgctgg ctgggcccgg gccggagggc ggcgggacac gctgcttgtc
      421 cccgcagtcg ccgacgccac cccgtagcga gcagacagga gaagacccag cggactacga
      481 ggagtacgaa gacttctcta gtctgccgga cacccgcagc atcgcatcgg acgattcctt
      541 ctaccctccc ggaggcgagg aagagtacgg ctcggtgagc gcggagagcg tcccggaggg
      601 cgtccctgag gcggcgaccc tcctgcgcgc cgcctgcgcc aacgacgtgg ggttgctgcg
      661 ggcgctagtg cggcgcgggc cgagttccga ggaggtacgg gagactgacc gcaacggccg
      721 gactggcctt attgttgcgt gctaccatgg ctttgtggat accgtggtgg ccttagcaga
      781 gtgtccccac gttgacgtca actggcagga cagcgaaggg aacacagccc tgatcactgc
      841 tgcacaggca gggcatgtca ccatcaccaa ctacttgctg aattatttcc ctggtctgga
      901 cctagaaagg aggaacatat ttggattcac ggccctcatg aaagcggcca tgcagggcag
      961 aacggaatgt gtgcgagccc ttatgatggc aggggcagat gttcaagcaa gggatccccg
     1021 tcgtgggctg tcaccacagg agtgggctgc gtacacaggc cgagcggagg ctgttcgcgt
     1081 cattcagagg ctgatggagc gaccctgtcc agagcagttt ggggacaagt acaagctgga
     1141 attgccactt cccgctgagg cggttttgaa gaagtcaggt tccaaaaact gcttgcagag
     1201 attcaccgcg ttcctgcggt ccactctgac ctctcgctcc tcaggccaga gcctggagga
     1261 tgggggcgtc cttgatcaca tggtcaggat gaccacgagc ctctacagtc ccgctgttgc
     1321 tgtagtctgt cagacagtgt gccctgagaa ccctccctgt gtggggaaac gacgcttggc
     1381 ggtgcaggaa atcctagcag ctaggggcaa cctgaacgcc caagcgcagg acagcaacaa
     1441 ggtagagtgc tctgagccac aatcccagat tttggagact cccagagcta gctcccggtc
     1501 tcccaagtcg cccgcggcat cgaggtccac tcctgcccct gtcactcgga aggccagcct
     1561 cctgcctttg cagttgcttc ggagaagcag cgtgcggccg ggcgtggtag tccccagagt
     1621 gcgcatcagc aaggcacctg cgcccacctt ccagccagag cgcgcagcgt ccaagggcaa
     1681 caccaaggac agcatctacc tgcagatccc caagtggcgg tacaaggagg ccaaggagga
     1741 gaagaggaag gcagaggagg cggagaagaa gcgccaggca gaggctcaga aagaaaagcg
     1801 ggcgccacga tggaggaaaa ggacgtgaag gggctatgac tctcatggcg cctgtgcttg
     1861 gtgcggggga agcagcatag gggtccttct tgggaggctg caggcgggct ctgtagacag
     1921 caccagagag ggatgctcct gttgccatgg gtgcatgctg aatcacacag cctcctggtc
     1981 attcaccttt cctagatcca ctaaggacgg tcctcattgc tcccaagaca gaactgggaa
     2041 aagtacgggt ggttttgatt aaaaccagtt ccctgagcat tctatacact aagaggtcag
     2101 tttacctaga agtcaccctt aaagaacccc aatcaagaat ttaaaacccc agtttatcaa
     2161 agggcatttt cacataattt tgtatcttgt tatttatgaa aaattgcagc attttacaag
     2221 tgatgggctc tttataatta agtcagtttt aatacttgta tttgtttaaa atgctgtgtc
     2281 tagcaataaa tacttgtaat gactgtgtga cttacacaga agggattctc cccttgccat
     2341 ttggttctgg cctctgcctt ctcgtgtcct atggccacac ctgtgcactg gcttttccta
     2401 ttaacttgag tgatgccaaa tgcctgtttt tacttgagaa aggcaccggc ttctatccaa
     2461 accgatcaag tgagatatga agtcttactt cctttcattc tttaaaattc ttttgttcct
     2521 accagcccct gaccccctgc caatcaatca cttcatcaaa actgattatg gcacactgca
     2581 gaaatattat gttgctaggg gcaaactcat tttaagcaag gggcttggat agatccatct
     2641 tccagggggt ttgaggaaga cgatcattta atggaggcag gtcttaatgg atgagtagca
     2701 taaacaaagt catatatgct tacaaagagc acaagtggat ctttaaaact gtcaaagatg
     2761 cagagggtag gacagtcaga atgctgccaa ctgttgaagg gctgcatttt tggaacaggt
     2821 gctacacact ggatactaga cagggtagtt tgggaaaggt tctcccagag taggcaacac
     2881 tctgatggtc gccatctcct tcagattcaa gtccagagag tcccttgtgt gtctttctac
     2941 tgatagttct ccattgatga ctggccctgg tgtttggctc atgcccacgc aactttatag
     3001 aacttccagt atgtggggac tttggcaggg cagcgatggg atttatcccg ggtgccaaca
     3061 catcggtgag agtttccttt ccatttccaa agcactgaga agtcccagct gggtcttaga
     3121 gtatctgttg cacaggcact ttatttgaat atttaatgta aagacttgga cgctatagag
     3181 tcagaatatt gcaggctgat ttggaagctc tttgctgagg tctgtcttac acagggggtg
     3241 gggtagcaaa ctggcttaag cttatttctt cctaattggt accattaagc attaaataac
     3301 attatctcac accagccttc cccaaaacgc cccaaaacag gaccctaagc ctgttcacag
     3361 gtggatttga caccggtacc accattcagt gttttttgtt ttgttttgtt ttaatcacat
     3421 tttagtaagt ttctctttaa ccctagaaaa ataccagggc gaacgctgga gtcttaggcc
     3481 ctcctctaaa accactgaga tcaattgtct gggtttaccc ttgggaccta gggctttggt
     3541 ttagctacat ctccttgggg gctgtgagga ccgcgaccca tctccgttat tttggggggt
     3601 tatcgttcct gtctcctggt accacctagc ttgtcacgag ccccccactt ctagccaagg
     3661 cactgccaca ggcttccaac ccactttcct caagctggtt gtccacagat gataacataa
     3721 acaggtttaa tccatttccc tgctgcagag ggggagctgt accccaatac tgtaccaagc
     3781 accaaggtga ctgttgcctt agtattgaaa ctgagacttc acagctgagg ctgtgggtgg
     3841 cccttatttc ctttcagggt gctcttccgg acacccaaat tcaactcctg taaaaggctc
     3901 catttctgga tgtttcgtgg ttgtcacacg gagagccagt ttgaggcagc tcctgcagag
     3961 gctgacttag tgtctggtat cagtgcacca ccaatcatac aacctgtttc cattgcgtta
     4021 atgtcacatt agagatgaca tattaccctg ccaaggaccc tgggtccctg ctgcagacca
     4081 attagagatg tacggattct gtccctccaa atctaccttt tcatgatcca ttttcagagt
     4141 ttccaattaa gcatgagtga ttacctgtgg tgttgcagca aggggctcac agggactttc
     4201 tttgtttcct gagtatttgg aagtgtgtct aagtgtacca cccctgtttg gtaccagggg
     4261 tgccaaaccc ttctctctgc tgtctccagc aggtgtccct atgactttgt tgtcacatct
     4321 gctccctggt atcaccttgt cttccacttg cttccttctc cagtttgatt atcaaactcc
     4381 ttgcaccaga tgccttgggg tctaaggagg cagaggaaca aagaagcctt tggtagtctc
     4441 tctgcattac caagctgcga cctctaaatc cccaggagtg catggagggc ggggctgtgg
     4501 cttctgccct ctgctttcag aaggaaggct gggtctattc tcctgacttg gaggagcaga
     4561 ggagcaggct tggggctagg cttgcactgt gtttattaac tgtaaatagt gaattccaag
     4621 ctgacaggtg tcttctcagg gatttataca taaatacagt taggggaaag ttaaagtgta
     4681 ttttaaatct ttaaagttga agtgtgtttt aaatcttttg gatgtttgag tcaattagga
     4741 ttaaactgga cagaagacat atttccaaga tagtgtcaat gctgctgttt ctaagagcga
     4801 tcttggaact tgtctctctg tggagattta tgggcaccgt ggccatggga atagctgtgc
     4861 atattaaagc cagagttgta tgtcagttgc ttcttctgtt tgtgaccctt gggtgaacag
     4921 ttgcctccag ttagtaagca gagacaactg gttgccagat gggccatcca tacccacccc
     4981 acccaccccc agtgctgtcc actgctcccc tggtcttttc tccttgcttt caagaataaa
     5041 atgttcagtc attctgcaga aacccacata gctcttcagg aaggatcagg gaaagttctg
     5101 catacttggc ccatcatgtc cttgatgggc agtgtgcttg ctgcgctaga ggaagacggc
     5161 aggtgacagg aaggactttg tgccaccttt tcagctccta ccaggcttcc tagccacacc
     5221 tgatacctca agaacagcaa gatggtcccc ttcagctttg gattcccctg tttctggaag
     5281 cttattctgc acatcaggaa agaggactca agatgttggc tagagaatgg gtttataggc
     5341 tcagagaaag tataccaagt gctctctgcc cattccttcc cagctggcag ctgggaccag
     5401 gtctctggag cagagataag gaagttatag gtgagaggct tgtggagagg ggctaactcc
     5461 agtccccaaa tgatgtaagg cctgctatcc ccaggagtct ggaagcatct tcagttatcc
     5521 tgagtgctgc tccagggacg gcatctcact gtaggctccc tcctcttcct cctgtttggg
     5581 aaattccagc tagttctcca gtgttggcca ctgcctggat catggtctgt gctgccagcc
     5641 cttggctcct caaactgggc aaccatgtgg aaggccatgg cttctagaga agggaggaag
     5701 gaacctggcc atggtagact cttaaaacca acaaagtcat atagataaca aaaggagacc
     5761 tgggatcatc agagtgaggg tagagttaac cacaaagaaa gaaaagtcac ttctaagtca
     5821 cttctaagtc attggctgcc agttctgcac attggtgtaa ctggaaccag ctgttcattt
     5881 cttcaccctt ggattcctgt gtttattcct gaacatttta gataagtgac tgggaattcg
     5941 tctggaggca ttatttgcca ggtgcaacac acagttctgc cccaggctga agcaagcctg
     6001 tgatgaaggg tgaagcctct gtcagaccag tggcagctct cagcattagg tcatattaat
     6061 ggggaccttg aatgacattc agttaaatat gcaaacggaa gggccagagc tgtgcttgtg
     6121 aatgtcctag ctgtggtggc tcacagggac actccctccc caccccaccc cccaggggat
     6181 gactctgtaa cctgttcgga tggtgtatat ttagacagat tgcagagtct gagagtctac
     6241 ccagattccc aaacaatgtg aaacctgata gggctggagt tctcctagcc taagctgttc
     6301 tactagaagg tgatgctgcc ccaggtggcc aagagcaaat agcgtggctg catcagggtc
     6361 agctctggct ttgatgtgtg ccattgcagg aggggcccag acctgagaga accccacccc
     6421 tggagagctc ccatagcctc cagcctactg cgtgggcatg ggggtagact ctgtgggaac
     6481 tggcataggc tcaccctagg acagcatctt actctaaagg agcattgaga ttcctagttt
     6541 gcctcagtat gagatctgct gctgctgacc agggcattgc gctttgaaag ctttctctgg
     6601 ctgtggtgtg attcctgttg ttctagaaga aaatgaagac gggagaaaaa cgaagctggc
     6661 catctcatat agagcagtgg actttgagta atcagtcagt taagataata gttagagagt
     6721 tctagaaact ggttcaaaat ggttcgacta tgagtaggat gagtggatac taaatgtccc
     6781 ttgctcccat cccaccatcc caatcctacc tagagcctgc tgtggagtta gaacccagaa
     6841 ctccattcag gtgacagcta agtctactac gattggaacc ttcttggttc caatgatagt
     6901 tctggaaagc aaacaatgaa aagagaatcg tgcccagtgt ttgctgggtg tgagggtctt
     6961 cggcagtggg gaccagatgg tgaggaacgg aagcaggctt ctgcatcgcc agggttcagg
     7021 ttccttctcc tggtttgagt tctgtttttt ttttttttta aatgtgaaga gattttcttt
     7081 gtcatttcta aaactcctgt cagttgctgg atgtcctaaa gctgttgaat atggacgtaa
     7141 ctgtaaatcc cagagtgttt tattttgaga tgagagtttt gctacagttt atacaggata
     7201 ttttcctatt tagacctcag ggctatcttg ggacccacta ctaagtgtga cccctccccg
     7261 cagcttcaat tctgggtaga tgagttacat aacttttaaa tgtgatatcc agcaggaaga
     7321 atgtatttct ctcttttaac ttcgggcaaa ttttgtttta aaggtctaga aaaaagacag
     7381 tagaagaaaa cagaggtaaa agaattaaaa accaactgta aaataaacat tctcatggta
     7441 tacaattgtg ctacctgaat aaacttatgt gcataaatta tttaaaagtg ctatgaaa
//
