LOCUS       NM_001374225            1657 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus ankyrin repeat domain 33 (Ankrd33), transcript variant
            3, mRNA.
ACCESSION   NM_001374225
VERSION     NM_001374225.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Rajan,S., Chu Pham Dang,H., Djambazian,H., Zuzan,H., Fedyshyn,Y.,
            Ketela,T., Moffat,J., Hudson,T.J. and Sladek,R.
  TITLE     Analysis of early C2C12 myogenesis identifies stably and
            differentially expressed transcriptional regulators whose
            knock-down inhibits myoblast differentiation
  JOURNAL   Physiol Genomics 44 (2), 183-197 (2012)
   PUBMED   22147266
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Sanuki,R., Omori,Y., Koike,C., Sato,S. and Furukawa,T.
  TITLE     Panky, a novel photoreceptor-specific ankyrin repeat protein, is a
            transcriptional cofactor that suppresses CRX-regulated
            photoreceptor genes
  JOURNAL   FEBS Lett 584 (4), 753-758 (2010)
   PUBMED   20026326
  REMARK    GeneRIF: Studies isolated Panky/Ankrd33, a gene encoding an ankyrin
            repeat-containing protein and that PANKY inhibited the DNA-binding
            activity of CRX.
REFERENCE   3  (bases 1 to 1657)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 1657)
  AUTHORS   Liu,P., Wang,Y., Vikis,H., Maciag,A., Wang,D., Lu,Y., Liu,Y. and
            You,M.
  TITLE     Candidate lung tumor susceptibility genes identified through
            whole-genome association analyses in inbred mice
  JOURNAL   Nat Genet 38 (8), 888-895 (2006)
   PUBMED   16862160
REFERENCE   5  (bases 1 to 1657)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC104834.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FJ895380.1, SRR17784645.477314.1
                                           [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN01164136
                                           [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               AC104834.4         172043-172201
            160-393             AC104834.4         172414-172647
            394-523             AC104834.4         172876-173005
            524-664             AC104834.4         173184-173324
            665-1657            AC104834.4         175299-176291
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 56.39 cM"
     gene            1..1657
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /note="ankyrin repeat domain 33"
                     /db_xref="GeneID:208258"
                     /db_xref="MGI:MGI:2443398"
     exon            1..159
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /inference="alignment:Splign:2.1.0"
     exon            160..393
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..1386
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /note="isoform 3 is encoded by transcript variant 3;
                     ankyrin repeat domain-containing protein 33; photorecptor
                     ankyrin repeat protein A; photoreceptor ankyrin repeat
                     protein"
                     /codon_start=1
                     /product="photoreceptor ankyrin repeat protein isoform 3"
                     /protein_id="NP_001361154.1"
                     /db_xref="GeneID:208258"
                     /db_xref="MGI:MGI:2443398"
                     /translation="MSEALPFPSNKTSTPECNLKTLYWACVHNDLAELQARLDAGVSP
                     EEASQVDSNGRTGLMVACYHGFGSIVALLSCCPFLDVNQQDKDGNTALMLAAQAGHMS
                     LVTLLLNYFAGLDLERRDQRGLTALMKAAIQDRSECVVALLMAGADLSSVDPVRGKTA
                     LEWAVLTDSFDTAQKIRQLLRRPQAEQLSLHYQPEWPALAQLVAQAQAQAQAPAAPSL
                     LERLQATLSLSFAQSPQEGGVLDHLVTVTTSLASPFLSTACHTLCPDHPPKLGTRGKS
                     VPELLGTAPPPPPEPHPPQQVPVPQVFAPNQSPQSMFSQWLQSRDSTRSQVPKILLSK
                     APSPSARYELTLRPQGQQSLAPPVWRFQERKKKEEETEPRGGGLGQAGGSK"
     exon            394..523
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /inference="alignment:Splign:2.1.0"
     exon            524..664
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /inference="alignment:Splign:2.1.0"
     exon            665..1657
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1636..1641
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /note="hexamer: AATAAA"
     polyA_site      1657
                     /gene="Ankrd33"
                     /gene_synonym="A930021G21Rik; Panky; Panky-a"
                     /note="major polyA site"
ORIGIN      
        1 gaggtgttta tggcagcttt ctgcaggcac agccatctgt cacctgcctt gtttcttggt
       61 atcagctacc ccacagaagg gctagtgagc ttttgaggtg tgggggtgga ctgagccaca
      121 ggctggccct ctgctgtgat ggagacccta gagtcccagc tgcctgctga ataaagaggg
      181 actcgggccg gcggcagagg agtcactatt gccccgagag gactggacat gtctgaggcc
      241 ctgcccttcc ccagcaacaa gacctcaacc cctgaatgca atttgaagac actgtactgg
      301 gcatgtgtcc acaatgacct tgctgagctc caagccaggc tggacgctgg tgtgtcccca
      361 gaggaggcct cccaagtgga cagcaacggg aggacaggcc tcatggttgc atgctaccat
      421 ggctttggtt ccattgtggc tctgctcagc tgctgtcctt tcctggatgt gaaccagcaa
      481 gacaaagacg ggaacacagc cctcatgctg gctgcccaag caggtcacat gtctcttgtg
      541 actctcctgc tcaactactt tgctggcctg gacctggaac gcagggacca gcggggactc
      601 acagctctga tgaaggctgc cattcaagat cgctccgagt gtgtagttgc cctccttatg
      661 gcaggtgctg acctgagctc cgtggatcct gtccggggca agacagcctt ggaatgggcc
      721 gttctgaccg acagctttga cactgctcag aagatccggc agctgctgag gcggccccag
      781 gcggagcagc tcagcctgca ttaccagcca gagtggccag ccttggctca acttgtggcc
      841 caggcccagg cccaggccca ggctccagct gccccatccc tcctagaaag gctacaggct
      901 actctgagcc tctcttttgc tcagtctccg caggaagggg gtgtcctgga ccacttggtg
      961 actgtcacca ccagcttagc cagtcccttc ctgagcactg cctgccacac actgtgccct
     1021 gatcacccac ccaagctggg cactagaggc aaatcagtgc cagaactttt aggtactgcc
     1081 cctccgccac ccccagaacc ccaccctcct cagcaagtcc ctgtccccca ggtctttgcc
     1141 cccaaccaaa gccctcagag tatgttttcc cagtggctac agtccaggga cagcaccagg
     1201 tcccaagtcc ctaagatcct cctctctaaa gcaccctccc cttctgcacg gtatgagctg
     1261 acactcaggc ctcaggggca gcaaagtctg gctcctccag tctggagatt ccaggagagg
     1321 aagaagaagg aggaagaaac agaaccacga ggaggtgggc tgggccaagc tggaggcagc
     1381 aagtaagaca cattccccgc cagggcctct ttctgcttcc cagctatctc tgccagcggg
     1441 aacctgctcc caccaagtat acacggttgt ccacagcagc gtctgcagca gagaagggac
     1501 caacccagtg tctgcaggca ggggactggc tggctacagt ggttatggta gtgataccca
     1561 cgctgtattc tgtgtaggtc gtcctaaagc aagggaaagc aaactgctct cacatgaaat
     1621 ctccaagttg tatcaaataa atagctgagg ctaggga
//
