LOCUS       NM_001013806            4334 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ankyrin repeat domain 13c (Ankrd13c), transcript
            variant 1, mRNA.
ACCESSION   NM_001013806 XM_485322
VERSION     NM_001013806.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4334)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4334)
  AUTHORS   Parent,A., Roy,S.J., Iorio-Morin,C., Lepine,M.C., Labrecque,P.,
            Gallant,M.A., Slipetz,D. and Parent,J.L.
  TITLE     ANKRD13C acts as a molecular chaperone for G protein-coupled
            receptors
  JOURNAL   J Biol Chem 285 (52), 40838-40851 (2010)
   PUBMED   20959461
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117211.3, BC065088.1, BQ562764.1, CF736962.1, AC145301.4,
            AK135906.1 and AI835245.1.
            
            On Jan 19, 2018 this sequence version replaced NM_001013806.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7974084.16236.1,
                                           SRR7652917.682974.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-466               AC117211.3         176234-176699
            467-1190            BC065088.1         14-737
            1191-1558           BQ562764.1         274-641
            1559-2234           CF736962.1         89-764
            2235-2722           BC065088.1         3963-4450
            2723-2724           AC145301.4         166339-166340       c
            2725-3120           BC065088.1         4454-4849
            3121-3607           AK135906.1         2394-2880
            3608-4310           AC145301.4         164753-165455       c
            4311-4334           AI835245.1         1-24                c
FEATURES             Location/Qualifiers
     source          1..4334
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 81.59 cM"
     gene            1..4334
                     /gene="Ankrd13c"
                     /note="ankyrin repeat domain 13c"
                     /db_xref="GeneID:433667"
                     /db_xref="MGI:MGI:2139746"
     exon            1..957
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     CDS             528..2153
                     /gene="Ankrd13c"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat domain-containing protein 13C"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 13C
                     isoform 1"
                     /protein_id="NP_001013828.1"
                     /db_xref="CCDS:CCDS17933.1"
                     /db_xref="GeneID:433667"
                     /db_xref="MGI:MGI:2139746"
                     /translation="MTGEKIRSLRRDHKPSKEDGDVLEPCEEEATAALGGAFTGGRSG
                     PGGSGKGGKACHKIFSHHHRLQLKAPAVPGPGVPAPPQHNAVTATCPAPACLGGSNPA
                     LVADGGGCPSLYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECA
                     HLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVGEKRPRLLKA
                     LKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMKCQRGD
                     LSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKS
                     ISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMES
                     LSKGGSLAEQSFEPVRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFK
                     ATVAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITA
                     TVTFQEFRCDEFDGSIFAIPEDYKEDPSRFPDL"
     exon            958..999
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1104
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1190
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1236
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1303
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1448
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1580
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1742
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1822
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..1921
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            1922..2022
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     exon            2023..4317
                     /gene="Ankrd13c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4290..4295
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd13c"
                     /note="hexamer: AATAAA"
     polyA_site      4310
                     /gene="Ankrd13c"
                     /note="major polyA site"
ORIGIN      
        1 gaggttgaca aacagggttt cagcctttaa gctagagttc gtaactgccg ttgacctcct
       61 cctttacgaa ggcccagagc accaggtcag agctctgagt ctgggtctga attcagccgc
      121 agggcccggc ccagggtgga accctgtgcg agaggagcgc gggcgctgcc cggaccctga
      181 cccaagcgca gaagcggccc tctaacactc cgcggcggcg tttcctccga agctctcgcg
      241 agaggagccg gggaaagatg gctgcgccgg gtctttccga gtgaggagga ggcggcggcg
      301 gcggcgccgg gcgtcgtgcg gtcgtggtct cttgagctgc ggctttcctc gtccgagacg
      361 agggccgccg cctccgggag atgcgcgtgt cgcggacccg cggtcgcccc gggagttcat
      421 gctgcgtgct aggctcgcgg ccgccgctct aatcgcccgg cgccgccgcc gcgccggctc
      481 ggcccgcggt gagcctcccg gagcctgtcc cgcgcgccgc ggcggctatg accggggaga
      541 agatccgctc cctgcggagg gaccacaagc ccagcaaaga ggacggggac gtgctggagc
      601 cctgcgagga ggaggcgaca gccgcgctcg gcggcgcctt caccgggggc agaagcggac
      661 cgggcggcag cggcaagggc ggcaaggcct gccataagat cttcagccac caccaccggc
      721 tgcagctgaa ggcgcccgcc gttccgggcc ccggcgttcc ggccccgccg cagcacaacg
      781 cagtgactgc cacctgccct gccccggcct gcctgggcgg cagcaacccc gctttagtcg
      841 ctgacggagg cggctgcccc tcgctctacc cggtccacga gtgcgtcttt aagggggacg
      901 tgaggagact gtcctcgctc atccgcacgc acaatatcgg acagaaagat aatcatggaa
      961 acactccttt acatcttgct gtgatgttag gaaataaaga atgcgcacat ttactgttgg
     1021 ctcataatgc tccagtaaag gtgaaaaatg ctcagggatg gagccctctt gcggaagcca
     1081 tcagctatgg agacagacag atgatcacag ctcttctaag gaaactcaag cagcaatcta
     1141 gggagagtgt tggagaaaaa cgacctaggt tgttaaaagc cctaaaagag ttaggtgact
     1201 tttacctaga acttcactgg gattttcaaa gctgggtgcc tttgctttcc cgaattctgc
     1261 cttctgatgc ctgtaaaata tacaagcaag gtatcaacat caggcttgac acaactctca
     1321 tagactttac tgacatgaag tgccaacgag gggatctaag cttcatcttc aatggggatg
     1381 ctgcaccctc tgagtctttt gtagtgttag acaatgaaca aaaagtttat cagcgaatac
     1441 accatgagga gtcagagatg gaaacagaag aagaagttga tattttaatg agcagtgata
     1501 tttattctgc aactttatca accaaatcca tttctttcac acgtgcccaa actggatggc
     1561 tttttcggga agataaaaca gaaagagtag gaaacttttt ggcagacttt tatctggtga
     1621 atggacttgt tctagaatca aggaaaagga gggagcacct gagtgaggag gacatcctgc
     1681 ggaacaaggc catcatggag agcctgagca aaggggggag cctggcggag cagagctttg
     1741 agccggttag aagacagtcc cttacccctc ctcctcagaa cactattacg tgggaagaat
     1801 acatatccgc tgaaaatgga aaggcaccac acctgggcag agaactggtg tgcaaagaga
     1861 gcaagaaaac atttaaagcc actgtagcca tgagccagga atttcccctg ggaattgagt
     1921 cattgttgaa tgttctagaa gtaatagcac ccttcaagca ctttaacaag cttagagaat
     1981 tcgttcaaat gaagcttcct ccaggctttc ctgtaaaatt agatataccc gtgtttccca
     2041 caatcacagc cactgtgact tttcaggagt tccgatgtga tgaatttgat ggatccatct
     2101 ttgctatccc tgaagactac aaggaagacc caagtcgttt tcctgacctt taactgatcc
     2161 agaagagcat gaggctccag gtggcaaagg cagagctttt ctaagcagag tgtcaacaca
     2221 tcagtgatgt gatgaaaaac tgacctctaa taaaacatcc acagcttcct gatgtgccat
     2281 tcattcatct ttttaaagtc acttcctgtc tgtaatagtt tgacacccag tgaccctgag
     2341 accttcctat gtaaagcagc tgtgagtgct gtgatttgtt tttaaagatt tttacacttc
     2401 ttgttgaaat atatatcaaa taaatatatc tatagctata tctaaaacac tcctggacca
     2461 ttaacgtaaa ttctgtgtct taagagatat gaaacccttt gaaatgcgtc acctctattc
     2521 agggtggcat gtataaatgt tcctttaagc tttgttttca tcattatgta tagttctgta
     2581 atttgaatgt ttaaccaact agaaggaatg cagttttctg aggtgaacag agcaatggta
     2641 accatcagtt tcatttacag cctgttgcaa tacattccga gggaacgctc cctgcaggga
     2701 atgtggtgcc cccccccccc cccagcacct tgataacagt tgcatttata gctgcaatgc
     2761 attccaaggg agtgctccct gcagggaatg cggtgccccc cagcacctcc atgcagctca
     2821 tcgtggtgct ctttgtttca cctgaatcct ttttcagtgg aaactgtttg ttactgatct
     2881 tcctttcata gagcttctat tttttttttt ttttttccta aacttgagtt taaaggtcct
     2941 tgttctgttg ataggtacgg taacatgctt acagctagcc ctctcctaag tatcagcact
     3001 ttaaacaaat tccaaatttt taaacttgct tcctagtaag tgcatgtaag tcagattatt
     3061 tttaatggaa tatggatgca ttggtgtcaa ttttaaaaaa taaatatgta ttttggacaa
     3121 ttatgtatta atgatttcaa aataaggtaa aaacatttta tatgtaacaa tatatttgtt
     3181 ataggctaaa cgtccagaaa cacacaagat tgaaagttct ttttttttaa gtcataggaa
     3241 aataattatt gatttgtctc caaagtgtta aaatcatgca ttactcactt ttacacctaa
     3301 atttttttca tatttattaa aaaatagttt aaagatccaa gaaagaaaag tagggagaat
     3361 aatgttcaaa tcacaatagt atcatgtttt attaaagact tagctaaatg tttgtgtcct
     3421 gatgagatgt gtcaagatac atttgtcagg ttgttacagt gtgactagta gtttaaactt
     3481 tgaccaagac ttttattgaa agatgactta tttaaaaatc caaagtgtta gccataagat
     3541 agttctctct ctctctctct ttttttttta aatttattta atgtgggtac actgtagctg
     3601 tcttcagaca caccagaata gggcatcaga ttccattaca ggtggttgtg agccaccatg
     3661 tggttgctgg gaattgaact caggacctct ggaagaacag gtagtgctct taaccactga
     3721 gccatctctc cagtccccga tatttatctc tttacagttg catctcacat agtgatacca
     3781 cctggcatat gttgacattt tactttttct aagaaaaata attgagttaa aaaaatcaaa
     3841 gccctcacca ctccagtaag tgatctattt agttttaaga actgagaagc ccaaagctag
     3901 catgatgaaa tggaggcagt ggctgatcca gtgacttagc tatttagttc tgttgtcaat
     3961 catgattcca aggttctgaa aggcagtgac actgttgctt taggctcatt ggcttgaaca
     4021 tgtaggaaga aatgataaat ttgcagcttg ggatttagaa tttcttaaac atgtgaatat
     4081 tttgctgggt aacactggag ataggactac tgaaaattgt tgcactggat tgtactactg
     4141 aaaatggttg cactggattg ttttgagact tcaatttacc tttaatgagt agtagaatca
     4201 gattgtccat tccaaaatgt tttttctctg atcacaaaga acaagtgtat ctcttatgat
     4261 ggtggaaaaa aaaggagtta attaatgcaa ataaactttt cacaatatta gacttttaaa
     4321 aaaaaaaaaa aaaa
//
