LOCUS       NM_001373882            3481 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ankyrin repeat domain 13b (Ankrd13b), transcript
            variant 1, mRNA.
ACCESSION   NM_001373882 XM_006533395
VERSION     NM_001373882.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Siletti,K., Tarchini,B. and Hudspeth,A.J.
  TITLE     Daple coordinates organ-wide and cell-intrinsic polarity to pattern
            inner-ear hair bundles
  JOURNAL   Proc Natl Acad Sci U S A 114 (52), E11170-E11179 (2017)
   PUBMED   29229865
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL607072.15.
            
            On Sep 4, 2019 this sequence version replaced XM_006533395.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC151158.1, SRR7345562.4756567.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-604               AL607072.15        71056-71659         c
            605-740             AL607072.15        59260-59395         c
            741-865             AL607072.15        59037-59161         c
            866-911             AL607072.15        58908-58953         c
            912-1055            AL607072.15        58219-58362         c
            1056-1245           AL607072.15        57944-58133         c
            1246-1312           AL607072.15        57800-57866         c
            1313-1394           AL607072.15        56140-56221         c
            1395-1459           AL607072.15        55197-55261         c
            1460-1590           AL607072.15        54898-55028         c
            1591-1748           AL607072.15        54628-54785         c
            1749-1901           AL607072.15        54342-54494         c
            1902-2065           AL607072.15        54066-54229         c
            2066-2142           AL607072.15        53919-53995         c
            2143-3481           AL607072.15        52102-53440         c
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 46.59 cM"
     gene            1..3481
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /note="ankyrin repeat domain 13b"
                     /db_xref="GeneID:268445"
                     /db_xref="MGI:MGI:2144501"
     exon            1..604
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             491..2371
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat domain-containing protein 13B"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 13B
                     isoform 1"
                     /protein_id="NP_001360811.1"
                     /db_xref="CCDS:CCDS88195.1"
                     /db_xref="GeneID:268445"
                     /db_xref="MGI:MGI:2144501"
                     /translation="MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQL
                     DPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLR
                     YRDYQRVVKRLAGIPMLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQ
                     NLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYMETLALAGQDREL
                     LLAAAQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVY
                     GASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGPQNGTLITQTLSQAN
                     PPAITAEEYFNPNFELGNRAMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDL
                     MAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRGSP
                     GSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREAVPRDEDDDLL
                     RFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRSAPPTPQRQPMPPAP
                     VPSPRPSPGPGSSSHVFRSYDEQLRLAMELSAQEQEERRRRVRQEEEELERILRLSLT
                     EQ"
     exon            605..740
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            741..865
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            866..911
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1055
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1245
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1312
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1394
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1459
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1590
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1748
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..1901
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1902..2065
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2066..2142
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2143..3481
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3459..3464
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3481
                     /gene="Ankrd13b"
                     /gene_synonym="B930093C12Rik"
                     /note="major polyA site"
ORIGIN      
        1 cctctcttcc ccgcattcgc ttgtccctca ccgtccgctc gggctgaggg ccgggctatg
       61 cggcttaggg gagccggagg gtgcgggcgc gcgtccctgc ggcggcggcg gcggcggcga
      121 ccccggggcc ggcgccccga gcgcccccgc tccagctgcg ggtccctgct ccctccgccg
      181 agaggcgtct ttgtgtgcgg gggtgtggga ggggaggcgc gaggccgcgt gccgccgagt
      241 gcccgctccc tcccagggcg ggtgggggct gctccgcgcc tcccgccgcc gcctcccgag
      301 gacgcccgcc gcccgcacca cgccgggcgc gccgcccccg cccgccgccg ccgccgccgc
      361 tcgcacatgc ccgagccgca gccccgcgag cagacagctc cggccgtccg ccccgcggcc
      421 ccgggcccgg gctcccgcgc cgtccctccc cgcgggccgg gcgccgcggc cccggcatga
      481 ggagcgggcg atgatccccg ccaacgcctc cgccaggaag gggcccgagg gcaagtaccc
      541 gctgcactac ctcgtgtggc acaaccgcca ccgggagctg gagaaggagg tccgcgccgg
      601 ccaggtggac attgaacaac tagatccccg aggccggact cctctgcacc tggctaccac
      661 cctggggcac ctggaatgtg cccgtgtgct cttggcacat ggtgcagatg tgggcaggga
      721 gaatcgcagt ggttggacag tgctgcagga ggctgtgagc accagggacc ttgagctggt
      781 gcagctggtg ctgcggtaca gggactacca gcgggtggtg aagcgactgg cgggtatccc
      841 catgctcctg gagaagctac gaaaggccca ggatttctat gtggagatga agtgggagtt
      901 cacaagttgg gtgcctctgg tatccaagat ttgccctagt gacacataca aagtgtggaa
      961 gagtgggcag aacctgaggg tagacaccac gcttttgggc tttgaccata tgacctggca
     1021 gagggggaat cgcagcttcg tcttcagagg tcaagacaca agtgctgtgg tcatggagat
     1081 tgaccatgac cgccgcgtgg tgtacatgga gaccctggcg ctggccgggc aggatcggga
     1141 gctactgctg gctgccgccc agccctcgga ggaacaggtg ctgagcaggc ttactgcgcc
     1201 cgttgtcacc acacagctcg acaccaagaa catctccttt gagaggaaca agactggcat
     1261 tctgggctgg cgcagtgaga agacagagat ggtgaacggg tacgaggcca aggtatacgg
     1321 ggcctccaat gtggagctca tcacccggac acggacagag catctttcgg aacaacataa
     1381 aggcaaagtc aaaggttgta agacacctct gcagtctttc ctgggaattg ccgagcagca
     1441 cgggggaccc caaaatggga ccctgatcac tcagactctg agccaagcca acccccctgc
     1501 catcactgca gaggaatact tcaaccccaa ctttgagctt ggcaaccggg ccatgggacg
     1561 tcccatggag ctgaccacca agacgcagaa gttcaaggcc aagctgtggc tgtgtgagga
     1621 gcaccccctg tccctgtgtg agcaggtggc tcccatcatt gacctcatgg ctgtcagcaa
     1681 cgcacttttt gccaagctcc gggacttcat cacgttgcgc ctgcctcctg gcttcccagt
     1741 caagattgaa atcccgattt ttcacatcct caacgcccgc atcaccttcg ggaacctcaa
     1801 tggctgcgat gagccagtgc cctcggtgcg aggtagcccc ggcagcgaga cgccctcccc
     1861 tggcagtgac tcttccagcg tcagcagctc cagctctacc acctcctgtc gtgcctgtga
     1921 gatctcccct gcactgttcg aggccccacg tggctacagt gtgctgggcg gccagcgaga
     1981 ggctgtgcct cgtgatgaag atgatgacct gctgcggttt gccatccagc agagcctgct
     2041 tgaggcgggc agtgagtatg accaggtcac catctgggag gcgctaacca acagcaagcc
     2101 aggcacccac cccatgtcct atgaaggccg ccgacaggac aggagcgccc cacccacgcc
     2161 gcagcgccag cccatgcccc cggctccagt gcccagccct cggcccagcc caggtcccgg
     2221 ctccagcagc catgtgttcc ggagctacga cgagcagctg cggctggcta tggagttgtc
     2281 cgctcaggag caggaggaga ggcggcggcg agtgcgccag gaggaggaag agttggagcg
     2341 gatcctgcgg ctctcgctga ccgaacagta gcgcctcctg ctgggaccct cgcccactcc
     2401 acgcaggacc cgggtctgcg cacctgccga gcggctgctg gagtctggag ccatcgcatt
     2461 gcgggtgtag cagcgcatca ggcttgagat gccaggggtt tgatacaggc gtggaatcac
     2521 tttccaggcc agagccctag aggggtgctg gtctccctgc tttgctgtat ggtgacccct
     2581 aatccgcttc tctgggctca gatctgtcca agggcggagg caggtggtat tgaaaaggaa
     2641 acgaatcctt gagaggagca ctgtcccgtc ccttgctcct tatggctggt cctccttctt
     2701 gctcactgac ccctctccag gacactgtcc ctgaagcctt cgcatctcag ctcttcaccc
     2761 ctgggaggca gctgatcgcc ctgcgtgctg tgtcgcgctg ctttgtccca gacacaaacc
     2821 agcacgtcaa gggcctagct cctccccacc ccggcatttc agcgtcaagt gcacttagcg
     2881 gggtacccag cccccccagt cccaacacct gtcctgtgtc tcagggtggt cctagcttct
     2941 ccttaggcag ccaggaattg gaacccccat gcccgcagca cgtttttctt atgatcaggg
     3001 agtgtgccta aggtgccccc tagtttgggc aaggcctggt tccctcacgg tgccttgggg
     3061 aatgggggca gcatattggc ttgggggcaa gcactagaac cgacacaaaa gggttgatga
     3121 gggccctggc accactgtca ccacccaccc cttcctacca gctgctgcta gccctctgtg
     3181 gttgtgcacc cctcttgccc ccattcaggg gccgactaac accctttatc caatggtgct
     3241 aaccccggct ctcccttttc caccctaccc acctaaagaa gcacaggccc cacgaagcag
     3301 gggccacacc cttgtcctgg gctgccttct ggctggcttc tctctgccag gggctcagaa
     3361 ggggcacaaa agggggtcaa gaaaagagca acaaagcaaa attgttcttc ctcttccctt
     3421 ccctgatgcc aggggcacca gactgattct gaggcacaaa taaaagcggt ttcaaaccag
     3481 a
//
