LOCUS       NM_026718               3316 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ankyrin repeat domain 13a (Ankrd13a), transcript
            variant 1, mRNA.
ACCESSION   NM_026718
VERSION     NM_026718.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3316)
  AUTHORS   Powles,N., Babbs,C., Ficker,M., Schimmang,T. and Maconochie,M.
  TITLE     Identification and analysis of genes from the mouse otic vesicle
            and their association with developmental subprocesses through in
            situ hybridization
  JOURNAL   Dev Biol 268 (1), 24-38 (2004)
   PUBMED   15031102
REFERENCE   4  (bases 1 to 3316)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC061692.1.
            
            On Mar 18, 2005 this sequence version replaced NM_026718.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061692.1, AK156539.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 55.99 cM"
     gene            1..3316
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /note="ankyrin repeat domain 13a"
                     /db_xref="GeneID:68420"
                     /db_xref="MGI:MGI:1915670"
     exon            1..185
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..1856
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat domain-containing protein 13A"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 13A
                     isoform 1"
                     /protein_id="NP_080994.2"
                     /db_xref="CCDS:CCDS19572.1"
                     /db_xref="GeneID:68420"
                     /db_xref="MGI:MGI:1915670"
                     /translation="MSSARDTSSRFPLHLLVWNNDYEQLEKELRDQNAEALDPRGRTL
                     LHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNT
                     SMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDIT
                     LLGFENMSWIRGRRSFIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKP
                     KSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSV
                     ITRIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGDLATECATVNNPTAITPDE
                     YFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHF
                     ARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTADESQGVEGTPAEAVSE
                     ATNFEVDQSVFEIPESYHIQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPAS
                     NGGVSHTHSYEAQYERAIQESLLTNMEGRCPGGLSESSRFDSDLQLAMELSAKELAER
                     ELRLQEEEAELQQVLQLSLTEK"
     exon            186..318
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            319..443
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            444..489
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            490..633
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            634..823
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            824..890
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            891..972
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1034
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1165
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1323
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1431
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1592
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..1660
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..3253
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3231..3236
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /note="hexamer: AGTAAA"
     polyA_site      3253
                     /gene="Ankrd13a"
                     /gene_synonym="1100001D10Rik; ANKRD13"
                     /note="major polyA site"
ORIGIN      
        1 ctccggccgg tcgggcgggc ccccgagacc ccgtcgggtc caggctggtg gcaggcgggc
       61 ggtcaggccc gggtggcggc ctcctcgcca tgtcctcggc ccgcgacacc agcagccgct
      121 tcccgctgca cctcctggtc tggaacaacg actacgagca gctggagaag gagctgcggg
      181 accagaatgc agaggccttg gacccccggg gtcggacatt actgcacctt gcagtttctc
      241 tggggcatct ggaatctgct cgagtcttgc tgcgccataa agcagatgtg accaaagaga
      301 acggccaggg atggacagtc ttacacgaag ctgtgagcac gggcgatccc gagatggtgt
      361 acaccgtcct gcagcaccga gactaccaca acacgtccat ggccctggaa ggtgtacccg
      421 agctgctaca caaaatcctc gaggccccgg atttctatgt gcagatgaag tgggagttca
      481 ccagctgggt gcccttggtg tctagaatat gccccaacga tgtctgtcgc atatggaaga
      541 gtggagccaa gctgcgcgtg gacatcacct tgctggggtt tgaaaacatg agctggatca
      601 gagggaggcg gagcttcata tttaagggag gagacaactg ggcggagctg atggaggtca
      661 accacgatga ccgcgtggtc accaccgaac acttcgatct ttcccaagaa atggagcgcc
      721 tcaccctgga cctgatgaag ccaaaaagca gggaggtgga gaggcggctg acaagcccag
      781 tcatcaacac cagcctggat actaagaacg ttgcctttga gagaactaaa tccggattct
      841 ggggctggag gacagataaa gctgaagttg tcaatggtta cgaagccaag gtttactcgg
      901 taaacaacgt gagcgtgata accaggatcc gcaccgagca cctaacggag gaggagaaga
      961 agcgatacaa agaggaccgg aatccactgg agtctctgct cggaaccgtg gaacatcagt
     1021 ttggtgctca aggggacctc gctacggagt gtgccactgt gaacaacccc acggccatca
     1081 ctcccgacga gtactttgac gaagactttg acctgaaaga cagggacatt ggaagaccaa
     1141 aagagctgac aattagaacg cagaagttta aggctacgct gtggatgtgc gaggagttcc
     1201 cactctccct cgtggagcag gtcatcccca tcattgacct catggctcgc accagcgctc
     1261 actttgccag attgagagat ttcatcaaat tggacttccc tcctggattc cctgtcaaaa
     1321 tagaaatccc cttattccac gtcttaaacg cacggatcac attcggaaat gtcaatggct
     1381 gtagcactgc tgatgagagc cagggtgtgg aggggacccc ggccgaggca gtttccgagg
     1441 ccacaaactt cgaggttgat cagtctgtct ttgaaatccc tgaatcctac cacattcaag
     1501 acaatggcag aaacgtgcac ctgcaagacg aagactatga gatcatgcag tttgccatcc
     1561 agcagagcct gctggagtcc agtaggagcc aggacctttc aggaccagct tccaacggag
     1621 gggtcagcca cacacacagc tatgaagccc agtatgagag ggccatccag gagagtctcc
     1681 taaccaacat ggagggcagg tgcccaggtg gcctcagcga gtcgagccga ttcgatagcg
     1741 acctgcagct ggccatggag ctgtctgcca aagagctggc ggagcgggag ctcaggctcc
     1801 aggaggaaga agcggagctc cagcaagtct tacagctgtc tctcactgag aaatagacat
     1861 tgccgtccag ggctgcagag cagaggctct gggctgcacg tgccatgcca gtgaggcaga
     1921 cccggggggc cgagggcctg cacttacaca gcagcccccc tttccttatg tagaggtgca
     1981 ggaccaggga ctccccagag cggagatccg ggcgtcggca gagccccatc tccacaccga
     2041 ggggaggaga gcatctttac cttccattcg ctgtcctgcc tggcaggtca catttttttt
     2101 ttaccagctt tagacagaaa tgctgagcct gcaggctagt agatgcatct tagtcagaag
     2161 tgacaagcta ctgcggagtc acggtgcttt tccacaggag aacagcagcc tttgtagagt
     2221 gggtacgagc tggagacgtt ccttcctgtt caccaaagaa acgggttatg ctgacctctt
     2281 tatttccctt cccgtagggc tcttgcagca ttgccattgt gccagtccca tttccacctc
     2341 gttccatgcc ttttaccccc agccaagagg atatgtacag gagctatttt agattatggc
     2401 tatttgcatc aaattcagat atacaaatga ccacggatgt tgccttagcc ttaaaaaatt
     2461 actaacagtt ttaagccacc tcactccaca cactgaggac ctgatttgaa tctgtaaagg
     2521 cagtcccttt gggagcagca tcctctgggc tacaccaaag gcagctaatc ctgtccttgg
     2581 aagagcagct agggggcccc cctgtggctg ggttctcaga gcaggcaagc tggccacatc
     2641 actggaagag cccagccagt gtgttctccg cctgctccca cttaggattt ccagcctggg
     2701 gagacccagc tgcacagcct ggcttcatag agaggacagg acgaacttga aacaagaaag
     2761 ggagctaact tagagcagag gctcttcatc caaaagggaa aaatgatgac tccacactgc
     2821 tttttagagt tcaaatcaac atctttctgg aaaaatatat tttttaacag aatcttttta
     2881 ttatttttaa aagatataaa actgactcct cccatcagta gcaatacaag gttatgcatt
     2941 ttaaccagac tttctcaggc ctcttttgga tacctttagt agttaactat ttttgtctaa
     3001 ccctcctgta aatacctact gcataacagc ccaacccctg gggaacacag ccgagggcac
     3061 cttgcccctc tcacctggcg caggcatcca cccccacaag gctgtgctga tcacacggca
     3121 aaacagtacc ttttcctctg ttctctgtct gtttcctgtt atgcttcttt ggggatagga
     3181 agagaagcca ccattcccag gaatgtctgt ttgatacagt cagcgttgcc agtaaaatgt
     3241 tctgagacac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3301 aaaaaaaaaa aaaaaa
//
