LOCUS       NM_001347091            3246 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus ankyrin repeat and MYND domain containing 1 (Ankmy1),
            transcript variant 2, mRNA.
ACCESSION   NM_001347091 XM_017320665
VERSION     NM_001347091.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC131059.6.
            
            On Nov 15, 2016 this sequence version replaced XM_017320665.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029700.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                AC131059.6         189272-189348       c
            78-234              AC131059.6         188886-189042       c
            235-424             AC131059.6         185941-186130       c
            425-568             AC131059.6         182511-182654       c
            569-1038            AC131059.6         174889-175358       c
            1039-1255           AC131059.6         173065-173281       c
            1256-1414           AC131059.6         172578-172736       c
            1415-1845           AC131059.6         171277-171707       c
            1846-2017           AC131059.6         170184-170355       c
            2018-2158           AC131059.6         168193-168333       c
            2159-2299           AC131059.6         167422-167562       c
            2300-2407           AC131059.6         165757-165864       c
            2408-2539           AC131059.6         164773-164904       c
            2540-2653           AC131059.6         163453-163566       c
            2654-2819           AC131059.6         162977-163142       c
            2820-2895           AC131059.6         158115-158190       c
            2896-3056           AC131059.6         157251-157411       c
            3057-3246           AC131059.6         156571-156760       c
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 46.6 cM"
     gene            1..3246
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /note="ankyrin repeat and MYND domain containing 1"
                     /db_xref="GeneID:241158"
                     /db_xref="MGI:MGI:3045261"
     exon            1..77
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            78..234
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..3103
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ankyrin repeat and MYND domain-containing protein 1"
                     /codon_start=1
                     /product="ankyrin repeat and MYND domain-containing
                     protein 1 isoform 2"
                     /protein_id="NP_001334020.1"
                     /db_xref="CCDS:CCDS83575.1"
                     /db_xref="GeneID:241158"
                     /db_xref="MGI:MGI:3045261"
                     /translation="MEEIRSVVTTDSQGSKTLSSRGLEGQNGRSLDTESQDSVKSYTF
                     FRRSRPGDLGEDEEESEGTVGEQDLKGTYKQLVQGVQEWQDGCVYKGEFGLNMKLGYG
                     EFSWPTGEAYHGQFYRDHFHGLGTYTWPDGSSFTGTFYLSQREGYGTMHTKTMLFQGL
                     YKEDQRFGPGIETYPDGSQDVGLWFREYLLKLCTRVPSGFSLVNYPEFLAFLTKSRRR
                     LDLSDEKVELGLSEEQDPFFYDYKQYLLNDELKLPPEMHVYSTDNSHLPMTDSLRQEL
                     DDHIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKDAHTSWNIPAILEGNRS
                     RFGPSGPKEQISKKMIMKAEEGDYNWIFGILRDNLACADVADSKGYTVLAAAAMHSHL
                     DIVNLLLDFGADVNKRSDEGITPLSMCFLQYYPCKSFHPNIAERTLLQESPKSLVTPK
                     ISFLLADANIDYLYDVGMPIAGGDELKTSSLDDSLASMQTPESSNMLHKEEVSPVKTV
                     STDVEKESEGAAENVDASTLYSVDTNFESTKCLRNYTINVSRDIMEKSAQAYSSLPQH
                     PCFPYKGTVRKMAQSMVERRNRWMTITLLLRRGADPNLCQVPMQALFLAVKAGDVEGV
                     RLLLMSGAQTDIQFPPQLQSLTPLHIAVSLPGEEGVKITELLLHVITNVDAKAADEDY
                     VYKGGKADLLPSSLKLNNEPGPPKSFYSTHTFIPEEGGRTALHVACEREDNKKCARDI
                     VRLLLSHRANPNVLWSGHSPLSLAIASGNDLVVKELLSQGADPNLPLTKGLGTALCVV
                     CDLVYEQQRSVENKIALIDRLISYGADVLNPVTLVQGDRTAVGTAVDYGYFKFFQDRK
                     IAHCPFHALMPAEREVFMARKRLLEYLGLQLRLAVLSKESRLDTKALYLSKRAELAPC
                     HRLKKKGSSSVRTQSSEKQSIPFYKFCYQCGRSIGVRLSPCPRCYGILTCSKYCKTKA
                     WIEFHKKDCNDIMAMIPHLEGSAWRVAESP"
     exon            235..424
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            425..568
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            569..1038
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1255
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1414
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1845
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..2017
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2018..2158
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2159..2299
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2300..2407
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2408..2539
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2540..2653
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2654..2819
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2820..2895
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            2896..3056
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
     exon            3057..3246
                     /gene="Ankmy1"
                     /gene_synonym="4930483I10Rik; ZMYND13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actggattta ctccattact ctgagacact tggtgtgatt tagaccaagg tttcggtctg
       61 ctgaaggtga ccctgaggtt tgaagaggag agatatggaa gaaattcgtt ccgttgttac
      121 cacggactct caaggctcga aaactttaag ctccagaggt ctggaggggc aaaatggtcg
      181 gtctcttgac actgagagcc aggattccgt gaagagctac accttcttca gaaggagccg
      241 tccaggggat ctcggagagg atgaggagga gtctgaaggc accgtgggcg agcaggacct
      301 gaaggggact tacaagcagc ttgtccaagg ggttcaggag tggcaggatg gctgtgttta
      361 caaaggggag ttcgggctca acatgaagct tggatacggc gagttctctt ggcccacagg
      421 cgaggcctac catgggcagt tttaccggga ccatttccat ggcctgggca cctacacgtg
      481 gccggatggc tccagcttca caggcacgtt ttatctcagc caacgagaag gctacgggac
      541 catgcacaca aaaacaatgt tattccaggg attgtacaaa gaggaccaga gatttgggcc
      601 gggcatcgag acctaccctg atggcagtca ggatgttggc ctgtggttcc gtgagtacct
      661 cctcaagctg tgcaccaggg ttcccagcgg tttctccttg gtaaactacc ccgaattctt
      721 ggccttcctc acaaaatcga gaaggagact tgatctctca gatgagaagg tggagttggg
      781 tctttctgag gagcaggacc ccttcttcta tgactataaa cagtatctcc tgaatgatga
      841 actaaagctg cctccagaga tgcacgtcta ttcgaccgac aacagtcacc tgcccatgac
      901 cgactccctg cgccaagagc tagatgacca catcttcatg aatgagatcc ctccgttcat
      961 tgaggacgaa gaaccctggc tcataacaaa cgagactcct ttgttggtca aaatccagaa
     1021 gcaaacttac aagttcagga acaaggatgc tcataccagc tggaacatac ctgccatcct
     1081 ggaggggaac cgcagcaggt ttgggcccag cggccccaag gagcagattt ccaagaagat
     1141 gatcatgaag gctgaggaag gggactataa ctggattttt ggaatcttga gggacaacct
     1201 tgcctgtgct gacgtggctg actccaaggg ttacactgtg ctggccgctg cggcaatgca
     1261 ttctcacctg gacattgtga accttctcct ggatttcggc gctgacgtga acaagcgctc
     1321 ggacgagggc atcacgcccc tcagtatgtg cttcctccag tattatccct gcaaatcctt
     1381 ccaccccaac attgctgaga ggaccctgct tcaggaatct cctaaatcct tggtcacccc
     1441 caaaatttca ttcttgcttg cggatgcaaa catagattat ctctacgatg tgggcatgcc
     1501 catagcaggt ggagatgaat tgaagacaag cagcctggat gactccctgg cctccatgca
     1561 aaccccggag tccagcaaca tgcttcacaa ggaagaagtc tccccagtga agactgtcag
     1621 cactgacgta gagaaagagt ctgagggagc ggcagaaaat gtggacgcta gcaccttgta
     1681 cagcgtcgat acaaatttcg agtctaccaa gtgcctgcgg aactacacta ttaatgtctc
     1741 gagggacatc atggagaaga gtgcccaggc ctacagttca ttgccacagc acccctgctt
     1801 cccatacaaa gggaccgtga ggaaaatggc acagtccatg gtcgaacgca gaaaccgttg
     1861 gatgaccatc acattgctgc tccgcagagg tgccgatcct aacctgtgtc aagtgcccat
     1921 gcaggctctg tttctcgccg tgaaggctgg ggatgtggaa ggggtgaggc tgctactgat
     1981 gagtggggcc cagacggaca ttcagtttcc tccacagttg cagtccctga ccccgctcca
     2041 catcgcagtc tcccttcccg gggaggaggg cgtgaagatc actgagctgc tgctccacgt
     2101 gatcactaac gtggacgcca aggcagcgga cgaggactac gtgtacaaag gtggcaaggc
     2161 tgatctcctg ccctcaagcc tgaagctcaa caatgagccg ggcccaccca agagcttcta
     2221 ctccacacac acattcatcc cagaggaggg agggcgcaca gctctgcatg tggcctgtga
     2281 gagagaggac aacaagaagt gtgccaggga catcgtgcgg ctccttctgt cccacagagc
     2341 gaatccaaac gtgctgtgga gcggccactc cccgctctcg ctggccattg ccagtgggaa
     2401 tgacctggtt gtgaaggagc tcctgtccca gggagctgac cccaacttgc ctctgaccaa
     2461 aggcttgggc actgccctgt gtgttgtgtg tgacctggtc tatgagcaac agaggagcgt
     2521 cgagaacaag attgccctga ttgaccggct cattagctac ggggcggatg tcctgaaccc
     2581 cgtgactctt gtgcaaggcg ataggacggc tgtgggcacg gcagtcgact atggctactt
     2641 caagttcttc caggaccgga agatcgccca ctgtcccttt cacgctctga tgccagcaga
     2701 gcgggaggta ttcatggccc ggaaaaggct gctggagtac ttaggcttgc aattgcgcct
     2761 tgctgtcctc agcaaggaaa gccggctgga cacgaaggcc ctgtacctga gcaagagagc
     2821 agagctggct ccctgtcaca ggctgaagaa aaaaggttcc agctcggtta ggacccaatc
     2881 ctcggagaag cagtcaattc ccttttacaa gttttgctac cagtgtggcc gctccatcgg
     2941 ggtccgcctc tcaccctgcc cccgctgcta tggaatcctg acttgtagca agtactgcaa
     3001 gaccaaggcc tggattgagt tccacaagaa ggactgcaac gacatcatgg ccatgattcc
     3061 tcacttggaa ggttcggctt ggagggtggc agaatctcca tgagggaaca atgctttgtg
     3121 ctgagcctgg agaggagccc agggttgcac cctgtggtag cctgacacaa gaagtgtctg
     3181 cacgatgaca gctgtatttc acagctgtct catcctcctg acctggcaat aaagtgacct
     3241 atagtg
//
