LOCUS       NM_001327810            4923 bp    mRNA    linear   ROD 26-NOV-2024
DEFINITION  Mus musculus ankyrin-repeat and fibronectin type III domain
            containing 1 (Ankfn1), transcript variant 1, mRNA.
ACCESSION   NM_001327810
VERSION     NM_001327810.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4923)
  AUTHORS   Liu,Q., Xiong,J., Kim,D.W., Lee,S.S., Bell,B.J., Alexandre,C.,
            Blackshaw,S., Latremoliere,A. and Wu,M.N.
  TITLE     An amygdalar oscillator coordinates cellular and behavioral rhythms
  JOURNAL   Neuron 112 (22), 3750-3767 (2024)
   PUBMED   39303704
REFERENCE   2  (bases 1 to 4923)
  AUTHORS   Bell,B.J., Wang,A.A., Kim,D.W., Xiong,J., Blackshaw,S. and Wu,M.N.
  TITLE     Characterization of mWake expression in the murine brain
  JOURNAL   J Comp Neurol 529 (8), 1954-1987 (2021)
   PUBMED   33140455
  REMARK    GeneRIF: Characterization of mWake expression in the murine brain.
REFERENCE   3  (bases 1 to 4923)
  AUTHORS   Zhang,S., Ross,K.D., Seidner,G.A., Gorman,M.R., Poon,T.H., Wang,X.,
            Keithley,E.M., Lee,P.N., Martindale,M.Q., Joiner,W.J. and
            Hamilton,B.A.
  TITLE     Nmf9 Encodes a Highly Conserved Protein Important to Neurological
            Function in Mice and Flies
  JOURNAL   PLoS Genet 11 (7), e1005344 (2015)
   PUBMED   26131556
  REMARK    GeneRIF: ENU-induced and genome-edited null mutations in mice
            produce deficits in vestibular function, fear learning and
            circadian behavior, which correlated with Nmf9 expression in inner
            ear, amygdala, and suprachiasmatic nuclei. [Mnf9]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4923)
  AUTHORS   Concepcion,D., Seburn,K.L., Wen,G., Frankel,W.N. and Hamilton,B.A.
  TITLE     Mutation rate and predicted phenotypic target sizes in
            ethylnitrosourea-treated mice
  JOURNAL   Genetics 168 (2), 953-959 (2004)
   PUBMED   15514066
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645903.8, AL672280.10, AL662930.29, AL772375.5 and AL672175.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4413039.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               AL645903.8         11546-11657         c
            113-153             AL672280.10        2899-2939           c
            154-288             AL662930.29        97890-98024         c
            289-490             AL662930.29        85916-86117         c
            491-701             AL662930.29        82468-82678         c
            702-896             AL662930.29        64644-64838         c
            897-1010            AL662930.29        63369-63482         c
            1011-1108           AL662930.29        15519-15616         c
            1109-1199           AL662930.29        12577-12667         c
            1200-1307           AL662930.29        7027-7134           c
            1308-1407           AL772375.5         40531-40630         c
            1408-1540           AL772375.5         39947-40079         c
            1541-1657           AL772375.5         39344-39460         c
            1658-1873           AL772375.5         33240-33455         c
            1874-2040           AL772375.5         24145-24311         c
            2041-2191           AL772375.5         21386-21536         c
            2192-2360           AL772375.5         19726-19894         c
            2361-2527           AL772375.5         10607-10773         c
            2528-2741           AL772375.5         4104-4317           c
            2742-4923           AL672175.7         199181-201362       c
FEATURES             Location/Qualifiers
     source          1..4923
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 54.34 cM"
     gene            1..4923
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /note="ankyrin-repeat and fibronectin type III domain
                     containing 1"
                     /db_xref="GeneID:382543"
                     /db_xref="MGI:MGI:2686021"
     exon            1..112
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..3538
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat and fibronectin type-III domain-containing
                     protein 1"
                     /codon_start=1
                     /product="ankyrin-repeat and fibronectin type III
                     domain-containing 1 isoform 1"
                     /protein_id="NP_001314739.1"
                     /db_xref="GeneID:382543"
                     /db_xref="MGI:MGI:2686021"
                     /translation="MCPVMETSPNRRLPFKDRHFTCSKIIGRRFACFAQRLSYRRKQS
                     QCDLLNESTGHLPATCSSAASKSLSWNYCSKMTQQMQNLHLSQSKKHSAPSSPNAAKR
                     LYRNLSEKLKGSHSSFDEAYFRTRTDRLSLRKTSVNFQGNEAMFEAVEQQDLDAVQLL
                     LYQYTPEELDLNTPNSEGLTPLDIAIMTNNVPIARILLRTGARESPHFVSLESRAMHL
                     NTLVQEAQDRVSELSAQVENEGFTLDNTEKEKQLKAWEWRYRLYRRMKTGFEHARAPE
                     VPANACLMVSSSTSLTVSFQEPLSVNAAVVTRYKVEWSMSKDFSPLAGEIIMDNLQTL
                     RCTITGLTTGQQYFVQVSAYNMKGWGPAQTTTPVCASPSNWKDYDDREPRHKGQSEVL
                     ESLLQQVRALHQHYSCRESSKLQTTGRKQSVSRSLKHLFHSSNKFVKTLKRGLYIATI
                     FYYKDNMLVTNEDQIPIVEIDDSHTSSITQDFLWFMKLSCMWEDIRWLRQSVPISMSS
                     STVLQTRQKMLAATAQLQNLLGTHNLGRLYYEPIKDRHGNILIVTIREVEMLYSFFNG
                     KWMQISKLQSQRKSLSTPEEPTALDILLITIQDILSYHKRSHQRLSPGLYLGYLKLCS
                     SVDQIKVLVTQKLPNILCHVKIRENHNISKEEWEWIQKLSGSESMESVDHNADCPMQL
                     FFYELQMAVAALLKQINIPRHQARNFRLYTQEVLEIGHNVSFLLLLPASDDVCTAPGQ
                     NNPYTPHSGFLNLPLQMFELVHFCSYREKFISLYCRLSAVVELDSLNTQQSLREAISD
                     SEVAAAKQRHQQVLDFIQQIDEVWREMRWIMDALQYARYKQPVSGLPITKLIDSSSEQ
                     NLKKISSTSSHIDCLPSTSPSPEMHRRKAVSESQPCSDEEGCSEVFLPTDSDYDSSDA
                     LSPRDLDLVYLSSHDIAQQALSGLSGSAPDVLQVHDMKASMGPGQDPQGPGQGPDTDH
                     SCVEFLHSLTLTGLAPKNHAKMVAGTRPPLGFLGKRKPGKHQHYGGFSRHHRWLRMHS
                     ETQSLSLSEGVYTQHLSQACGLAEDPGEAEGPGPVVDGPRGLPLAHAASLPEERRSCL
                     QDPRRPLQRVYVEPYSDTLAGQDPKLWTSLSPTPAGRSSLPSSTSSEMSPDPTSPVSE
                     ILSSML"
     exon            113..153
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            154..288
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            289..490
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            491..701
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            702..896
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            897..1010
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1108
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1199
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1307
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1407
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1540
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1657
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1873
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            1874..2040
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2041..2191
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2192..2360
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2361..2527
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2528..2741
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
     exon            2742..4923
                     /gene="Ankfn1"
                     /gene_synonym="4932411E22Rik; Gm1175; mWAKE; nmf9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtgcgcacg tttacaaagg ggtttccctc cagctccccc tcccgaggag gggggctctc
       61 gcaactccag aactcatcca tgtgtcctgt catggagaca tcaccaaaca ggaggctgcc
      121 cttcaaagac agacatttta cttgcagcaa aataatagga aggaggttcg cttgctttgc
      181 gcagaggctg agctacagga gaaagcagag ccaatgtgat ttattgaatg aaagcactgg
      241 acacttacca gcaacttgtt cctctgctgc ctcgaagagc ttaagctgga actactgctc
      301 gaaaatgacc cagcaaatgc agaacttaca tctttcccag tcaaaaaaac acagtgctcc
      361 atcgtctccc aatgctgcca agcgactgta caggaacctc tcggagaagc tgaagggcag
      421 tcactcgtcc tttgatgagg cctattttag aacaagaacg gatcggctga gtctcagaaa
      481 gacttctgtg aacttccagg gcaacgaagc catgtttgag gcagttgagc aacaggacct
      541 agatgctgtg caactcctcc tctaccaata tacaccggaa gaactagatc tgaacacacc
      601 gaacagcgaa gggctgacac ccctggacat cgccatcatg accaacaacg tgcccattgc
      661 gaggattctt ctgcggacag gagccagaga aagtccgcac tttgtcagcc tggagagccg
      721 agcaatgcat ctcaacactc tagttcagga ggcccaggac agggtgagtg agctgtctgc
      781 acaggtggag aatgaaggct tcaccctgga caacacagag aaagagaagc agctgaaggc
      841 ctgggagtgg aggtaccggc tctaccggcg catgaaaact ggcttcgaac atgcccgagc
      901 cccagaggtg ccagccaatg cctgtctcat ggtaagcagc agcacgtccc taacggtcag
      961 ctttcaagag cccctcagtg tcaacgcagc cgtagtgacc aggtacaaag tggaatggag
     1021 catgtctaaa gacttttccc cgttggctgg ggagatcatc atggataacc tgcagaccct
     1081 gaggtgtaca atcacaggac tcaccacggg ccaacagtat tttgttcaag tctcagctta
     1141 caacatgaaa ggatggggac cagctcagac cacaacgcca gtgtgtgcct ccccctccaa
     1201 ctggaaagac tatgacgaca gagagcccag acacaaggga cagagtgagg ttctggagag
     1261 cctactgcag caagtccgag cccttcatca gcattacagc tgccgggaaa gctcaaaact
     1321 gcaaaccaca ggccgcaagc agtcggtgtc caggagcctg aagcacctat ttcattcctc
     1381 aaacaagttc gtgaagacct tgaaacgagg actttacata gccactatat tttattataa
     1441 agacaatatg ttagtcacca atgaagacca aataccaatt gttgaaatag atgactctca
     1501 caccagttct attacacaag actttctgtg gttcatgaag ctgtcttgta tgtgggaaga
     1561 catcaggtgg ctgaggcaaa gcgtgcccat atccatgtcc tcgtccactg tgctgcaaac
     1621 tcggcaaaag atgcttgctg ccacagctca gctacagaat ttacttggaa cacacaactt
     1681 gggaagactt tactatgagc ccattaaaga tcgccatggc aacattctca tagttaccat
     1741 cagagaagtg gagatgcttt attccttttt taatggcaaa tggatgcaaa tctcaaaact
     1801 gcaaagccag aggaagtctc tgtcaacacc cgaagagcca acagccttag atattttact
     1861 aataaccatc caggatattc tgtcctacca caagaggagc catcagcggc tctcacctgg
     1921 actgtatcta ggttacctaa agctgtgtag ctctgtggat cagatcaaag tgctcgtaac
     1981 ccaaaagcta cccaacattc tctgccacgt gaagatccgt gaaaaccaca acatttccaa
     2041 agaggagtgg gagtggatcc aaaagctttc tggctctgag tctatggaaa gtgtggatca
     2101 taatgctgac tgccccatgc aattgttctt ctacgagctc cagatggcag tggcggctct
     2161 cctgaagcag atcaatatac ctcgacacca ggcaaggaac ttccgcctct acacacagga
     2221 ggtgttggaa attggtcaca atgtgtcctt tcttctcttg ctccctgcct cagacgacgt
     2281 ctgtacagcc ccaggacaga ataatcctta caccccgcac tcagggtttc ttaacctccc
     2341 tcttcagatg tttgaactcg ttcatttttg cagctacaga gagaaattta ttagtctgta
     2401 ttgccgcctt tctgctgttg tggagctgga ctctctgaat acccaacagt ccctgaggga
     2461 ggcaatctca gacagcgagg tcgcagctgc caaacaacgg caccagcaag tgctggactt
     2521 tattcagcaa attgatgaag tctggcgtga gatgagatgg atcatggatg ctctacagta
     2581 tgcccggtac aagcaaccag tctctggctt gcccatcact aagctgatag actcctccag
     2641 tgagcagaat ctaaagaaga tcagttctac gtcatcacac atagactgtc ttccgtcaac
     2701 atccccatcg ccagagatgc acagaagaaa ggcagtgagt gagtcacagc cctgctcgga
     2761 tgaagaaggc tgctcggaag tcttcctccc cacagacagt gactatgact ccagcgatgc
     2821 cctgagccca cgagacctgg acctggttta cctgtcatca catgacatag cccagcaggc
     2881 cctcagcggc ctcagtggca gcgccccaga tgtcctacag gtgcatgaca tgaaggcctc
     2941 catgggacct ggccaggacc ctcagggccc agggcagggt cctgacaccg accactcatg
     3001 tgtcgagttt ctccacagcc tgaccctcac gggcttggca cccaagaacc atgccaagat
     3061 ggtggcaggc acacggccgc cactgggctt cttgggaaag cggaagccag gcaagcacca
     3121 gcactatggt ggcttcagcc gccaccaccg ctggctgcgc atgcacagcg agacgcagtc
     3181 cctgtcactc tccgaaggtg tttacaccca gcacctgtct caggcctgcg gcctggctga
     3241 agatcctggg gaggcagagg ggcctggacc tgtggtggat gggccccgag gcctgcctct
     3301 ggcccatgca gccagcctcc cagaggagag gaggagctgc ctccaagacc caaggcggcc
     3361 cctgcagaga gtctatgtgg aaccctattc cgacacactc gcaggccagg atccaaagct
     3421 gtggaccagt ttgagcccta cccctgcagg ccgcagcagc ctcccaagct ccactagttc
     3481 agagatgagt ccagacccca catctccagt ttcagaaata ttaagtagta tgctttaggg
     3541 tggcccacac cggctctcta tttgtcccct gctattcctt gcatttcttc agcacagccc
     3601 catcctgccc cctcagtgtc ctcacctatt tcaaagtatt gaaagttaca aagctaaagg
     3661 ttacacggac aaggcttttt ttttttccaa agtgggcgac aggaggaggg gaggggttcc
     3721 caccagggtc ccacccacct caccctagaa aatgtatgga gtctgagacc cgtgattcaa
     3781 aatacataac tccttcgagg cacctggggc tgagataggc cagcccaaca tggactctta
     3841 attctgcaat gttctggtaa tatcaatcgt gggctgagag ttctttagtg agtttgtggt
     3901 tgatgaagga gttcagtggg tgaaaataag aataatagtt actccgtcaa atccaaactt
     3961 tcagaagctg cagcccaggt tgcctctcaa gagcaaagat tcaagtagac tcgtgctggg
     4021 ttttccgtca acgaaaccag gatattctaa actgcgaggt cctcgggact ccccaggtcc
     4081 aagtctatcc tggtttagtg ggttttggaa aggttttttt tttcttcttc ttcttcactg
     4141 agtgttgtgt ggagaatacc agaaacaaaa gtagaggaca cttcttttct agtcccgttt
     4201 ttccgagata gaatagggca agaagcagct ttccaggcac tctccgatcc cactcaatcc
     4261 tgacaatgag cagtaaagta ttccagcgag caaggggatg gctgggttac atgagagcct
     4321 gaattatagc aacgaaaagg gagaagagaa gaggacaaaa gtcccttttc tttacagcaa
     4381 actaaatgtg tccatgatgg ccgcaccatt tagaagggca gtggattcat gatactaaac
     4441 tgatccgtta ttgaagaaga aagtgtctag cagatgcagt gatgtaggga cgggttcctc
     4501 taagcatcag aggcacatca ttcacccatc actcctcatc ctcaagaccg ctcagggctg
     4561 gggtggcttc cctctgcttt cacgctgctc ctcgcagaat gagttcttgc cctacggtcc
     4621 tctggcccat tggccacatg ggaagtttcc agcccatagt ttacaccaag catgtgatca
     4681 gtaacacctg gaaatcccgc tgtccccaca ctgcctcttc cctgaatttc tcaaaagtga
     4741 gaaactcaac cagaaatcac actgcatatt caagaaaggc acagttctcc gaaagccaag
     4801 acccattcag tccacggcca ttctcaatgt tctttttctg catagcaggc ctttcaattc
     4861 gctcagcaaa ttctgactta ctaaacccaa ccacattaaa taaaaaccta ctcattcata
     4921 ttg
//
