LOCUS       NM_173405               2685 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus archaelysin family metallopeptidase 1 (Amz1), mRNA.
ACCESSION   NM_173405
VERSION     NM_173405.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK078332.1, AK139472.1 and AK030521.1.
            
            On Sep 14, 2006 this sequence version replaced NM_173405.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078332.1, SRR7652917.1135004.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               AK078332.1         1-117
            118-140             AK139472.1         132-154
            141-1926            AK078332.1         141-1926
            1927-2685           AK030521.1         666-1424
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 79.27 cM"
     gene            1..2685
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /note="archaelysin family metallopeptidase 1"
                     /db_xref="GeneID:231842"
                     /db_xref="MGI:MGI:2442258"
     exon            1..42
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            43..140
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            141..663
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             360..1868
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /note="archeobacterial metalloproteinase-like 1;
                     archeobacterial metalloproteinase-like protein 1"
                     /codon_start=1
                     /product="archaemetzincin-1"
                     /protein_id="NP_775581.1"
                     /db_xref="CCDS:CCDS19824.1"
                     /db_xref="GeneID:231842"
                     /db_xref="MGI:MGI:2442258"
                     /translation="MVQCKPPQEFSFGPRALKDALISCDLALKQMYTSAFSPSERLFL
                     SEAYNPNRTLFSTLLIHSAYDWLLSRPEAPEDFETFHASLQLRKQSLARKHIYLQPID
                     LSEGLAGCPLLDHLRSCAEAFFLGLRVKCLPSVAAASINCCSRPSRDTDGLQLHTDGI
                     LSFLKNNKPGDALCVLGLTLADLYPHDAWTFTFGRFLPGHEVGVCSFARFSGEFLQAG
                     SSVPDSALLEAAAAGGPETLPRERGRTLCFSALGMVQCCKVTCHELCHLLGLGSCRWL
                     RCLLQGALSLDEVLRRPLDLCPICLRKLHHLLGFRLLERYKRLHAWTRVMVEIWSGQE
                     AGEPSVSEDTLPFSADSGMGCESDTEPVTSPSEPVTPDGWSHPFPDGPEPVSEDGLGS
                     LMASEVSLTLGGPVDAMEEYGQWLTACIQTLEREGAEEELLQVDAAVDALSRWEMFTG
                     QLPVTKQHVPCGKDNVGLRRVLGDKFSSLRRRLSSRRFAKASSSHCRWGAEN"
     exon            664..831
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            832..960
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1133
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1310
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..2685
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2649..2654
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /note="hexamer: ATTATA"
     polyA_site      2683
                     /gene="Amz1"
                     /gene_synonym="5330426I05; 6530401C20Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaagtgacac gagcgtgcct ggcggtgtgt ggcatgtgtg cggctgggtg tcactaggtg
       61 aaggaccaga ccaaggtgcc ctgcagttgc tgtccccacc ctcgaagtgg acctcctagc
      121 caaagacagc cacggctcag ggggtcagca ggcttttttc tgctcacctt gctgagaagt
      181 ttcagaagag gcagaattaa gcctcgtggt ctctcagtcc agcctccatc ttctgggagc
      241 cctgagcggg tactctctaa gcctgagaga aggttctaca agagaccgtg gctgtcccct
      301 gggagattca tggcccggaa aaggaaatca aaggagtggc cagcggccaa acacacggca
      361 tggtgcagtg caaaccaccc caggagttca gcttcgggcc ccgggccctg aaggatgccc
      421 tgatctcctg tgacctggcc ctgaagcaga tgtatacctc agccttttcc ccgtcggaga
      481 gactcttcct gtctgaggcc tacaacccta accggactct cttcagcaca ctgctcattc
      541 actcagccta tgactggctc ctgagccgcc ctgaagcccc tgaggatttc gagaccttcc
      601 atgcttcttt gcagctccgg aagcagagcc tggcccggaa acacatttac ctgcagccca
      661 tagatctgag cgaggggctg gcgggatgcc ccctgctgga ccaccttcgg agctgcgccg
      721 aggctttctt cctgggcctt cgcgtcaaat gcctgccctc agtggctgcc gcctccatta
      781 actgctgctc aagacccagt cgggatactg atgggcttca acttcacaca gatggcatct
      841 tgtccttctt gaagaacaac aagccagggg atgccttgtg cgtgctgggc ctcacgctgg
      901 ctgacctgta cccccatgat gcctggacct tcaccttcgg cagatttctt ccggggcacg
      961 aagtgggtgt gtgtagcttc gctcgcttct ctggagagtt cttgcaggcc gggtccagtg
     1021 ttcctgactc agctctgctg gaggcagcag cagcaggtgg ccccgagacg ctgcctcgtg
     1081 agcgaggacg gaccctgtgc ttcagcgccc tgggcatggt tcagtgctgc aaggtcacct
     1141 gccatgagct ctgccacctc ctgggcctgg ggagctgtcg ctggctccgc tgcctcctgc
     1201 agggggcgct tagcctggat gaggtgctcc gtcggcccct ggacctctgt cccatctgct
     1261 tgaggaagtt gcatcacctc ctgggcttca ggctcctgga gaggtacaag agactccatg
     1321 cttggactcg ggtgatggtg gagatatggt ctggtcaaga ggctggggag ccatctgtgt
     1381 cggaggacac cttacccttc agtgctgact caggcatggg ctgtgagagt gacacggagc
     1441 ctgtcaccag cccgtcagag cctgtcaccc ctgatgggtg gagtcatccc ttccctgacg
     1501 gacctgaacc agtatctgag gatgggctgg gctctctcat ggcctcagaa gtgtcgctga
     1561 ccctcggggg gccggtggac gccatggagg agtatggaca gtggctgact gcgtgcatcc
     1621 agaccctgga gagggaggga gctgaagagg agctgctcca ggtggatgcg gctgtggatg
     1681 ccctgagccg gtgggagatg ttcacagggc agctcccggt gaccaagcag cacgtgccct
     1741 gtggcaagga taatgtggga ctgcgcaggg tcctgggaga caagttctct tccctgaggc
     1801 gccggctgag ctcacgaaga tttgccaagg ccagttcttc ccactgccgc tggggggcag
     1861 agaattaacc tggcaagatg gaccagccaa tgccgagaag tcagctcctg gcattatttt
     1921 ttttttcctc tgaggatact caccaaccag gggtgcccag tgactgaggg tcctctggta
     1981 tctgcagggt taaaacaaag gttccccaga agctaaagaa atgctctttg ggtgcttgcc
     2041 cacagggttc ccatgttgtg tggcctgcag aggacgctga gaggcaggag gttgctacat
     2101 ggttaattgt accctgcagg agggggctct gggccaccct gcagcatggg ctatgtggct
     2161 gtgtatgtct gtttctatct ctgtgtgtct gtgcacgtga gtgcagttgc ccacagaggc
     2221 cagaagaggg cagcagaggc cattacagga agttgtaagc caccttacat gtggcttgtt
     2281 tgcaattgaa ctcaggtcct ctgcaagtgc agcccacatc tttaatgtct gagccatctc
     2341 tctggcacca acatttgatg ttgacctgtg ttgctaacac ggggttcttc tccatggcta
     2401 gaatgccttt ctgctcacca gggctggcac aggtgccatt gagaagatcc tgaggacatt
     2461 tgtgccctgt gaagctggca gacgtggggg tgatggggct ggctgtggaa gacagaggcc
     2521 acttctctaa ccctggggct gctgctgcca ccagttaggc cagtgtggtg gttggggctg
     2581 agctcttttg tctttgatga catttttcct gtctctggct atatcaattc ctgacatagg
     2641 atgttaaaat tatacatcca cagctgtgct gtgttctacc tttgt
//
