LOCUS       NM_153515               4781 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus AMME chromosomal region gene 1-like (Ammecr1l),
            transcript variant 2, mRNA.
ACCESSION   NM_153515
VERSION     NM_153515.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4781)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 4781)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK151060.1, BC056948.1 and AC161511.3.
            
            On Jun 4, 2011 this sequence version replaced NM_153515.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            coding sequence compared to variant 1. The resulting isoform (2) is
            shorter at the N-terminus compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056948.1, SRR7974084.13300.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                AK151060.1         2-57
            57-2297             BC056948.1         1-2241
            2298-4781           AC161511.3         43925-46408         c
FEATURES             Location/Qualifiers
     source          1..4781
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 17.84 cM"
     gene            1..4781
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /note="AMME chromosomal region gene 1-like"
                     /db_xref="GeneID:225339"
                     /db_xref="MGI:MGI:2442711"
     exon            1..371
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            372..482
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            483..927
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             521..1453
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     AMMECR1-like protein"
                     /codon_start=1
                     /product="AMMECR1-like protein isoform 2"
                     /protein_id="NP_705735.1"
                     /db_xref="CCDS:CCDS37753.1"
                     /db_xref="GeneID:225339"
                     /db_xref="MGI:MGI:2442711"
                     /translation="MGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSHGNQSTTVPGS
                     SSGPLQNHQHVDNSSGRENVSDLTLGPGNSPITRMNTASGALSPLPRPNGTANSTKNL
                     VVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAM
                     NLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIR
                     IEFINEKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYR
                     SEKVTISYAEYIASRQHCFQNGTLHAPPLYNHYS"
     exon            928..1038
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1153
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1244
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1341
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..4781
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4451..4456
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4470
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
     regulatory      4755..4760
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4776
                     /gene="Ammecr1l"
                     /gene_synonym="5430429D03Rik; E230022H04Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccagagcttc gggatctcta tggttctcac cgactcgcta gaggacgttt ggtccactgg
       61 aggactccct acattcttcc tccattacct cactgcctcc ggtgcctgct gggatagagg
      121 aggactcggg tcccgactcg actcggtcct ccgcccgccc cgggaatacc tctagctctc
      181 cccggccgcc accgccccgc cgcttcctcc tgtgccctcc cgccggcctc cttcgggcgt
      241 cctcacccgt cttgggactc tgctttttcg ggagccccca cctaggcgca tggctccatg
      301 aagcaagagg aagagaaggc agagcgcgag aggtcccgtc cgccccggct gtgtctgggt
      361 caggagagaa ggcattggaa gaaggaatgg aattggaaga aagaagattc attccagaga
      421 caaaatagct tccctttcct attgtagctg tttcctctgg gactataacc tttctgcttt
      481 caggttctgc agcattccag atcaagaaca ccaaatcagg atgggaaaaa gacgttgtgt
      541 tcctcccctt gagcccaagt tggcagcagg ctgttgtggg gtcaagaagc ccaaactatc
      601 tggaagtgga acgcacagtc acgggaacca gtctacaact gttcctggct caagttcagg
      661 acctcttcaa aaccaccagc atgtggacaa cagcagtggt cgggaaaatg tatcggactt
      721 aactctggga cctggaaact ctcctattac acgaatgaat actgcatctg gagccctgag
      781 ccctctcccc cggcccaatg gaactgccaa tagcactaag aacctggtgg tgactgcaga
      841 gatgtgctgc tactgctttg atgtgctcta ctgtcacctc tatggcttcc cacagccacg
      901 gcttcctaga ttcaccaatg acccctatcc tctctttgtg acctggaaga cagggcgaga
      961 caagcggctt cgtggctgca ttgggacctt ctcagccatg aatcttcatt caggactcag
     1021 ggaatacaca ttaaccagtg cacttaagga cagccgattc cctcccctga cccgagagga
     1081 gctgcccaaa cttttctgtt ctgtctccct ccttactaac tttgaagatg ccagtgacta
     1141 cctggactgg gaggtagggg tccatggaat tcggattgaa ttcatcaatg aaaaaggcat
     1201 caaacgcaca gccacatatt tacctgaggt tgctaaggaa caagactggg atcagatcca
     1261 gacaatagat tccttgctca ggaaaggtgg ttttaaggct ccaattacca gtgaattcag
     1321 aaaatcaatc aaactcacaa ggtatcgaag tgagaaggtg acaatcagtt atgcagagta
     1381 tattgcttct cgacagcact gtttccagaa tggcactctt catgccccgc ccctctacaa
     1441 tcattactcc tgacacacgg ctacatgacc agtcccaccc ccctgtggcc accaatggct
     1501 atgacatcat tggagcagat gcctcctctt cctggtccag ttacttctat tactgcacca
     1561 ttttatgatg ctagcttccg ttgccaagtc tgcctcctgc tgactggagg gtgtggggat
     1621 acattgaatg caacagaaca tgaggggccc aagccttata tcagcctttc ctcaatctgg
     1681 ggttctgttg gatcagggct ccccaataac cagtgagaat ggctgtgtgg gttcagaaga
     1741 ccgttgtctg gtgatttccc acaagtattg gccacacact gaaaactgga attgactgtg
     1801 acccatggag gcttcttccc caatccccca cagcccgcca catcaattag ctgtactccc
     1861 tggcagtctg ggcaacggag accaacagga accactttta ggttgtttta aattcctttt
     1921 tttaaacttc cagtttattg tgtaccaaga gttgatccac aacctccatg cttcagaagt
     1981 gaacaccatg ttagggttga acatgggcac catgagcccc tgtgagtcct ggataagatt
     2041 ctcaaaccaa gatcagaaat cctgtgatga catttcatcg tacagtaagc tgtgaaggtt
     2101 ttcatgctta cccgactctc agtggacatt ctggtactct tcctgcattg agtctcctgc
     2161 tgtgagctct gtggcatagc ctgctgagga atggaatgga gatgcctata gaggtcccaa
     2221 tgtcatcgtc gtaagcaggt gtgaaaggag agatctcttc ctcaccaccc ggctacctca
     2281 actcttttct ggtagcagtg cctatgtagc tgcatctagg ttctcagaag cacagacatg
     2341 taaacaggtg gttgggttgg gctttaggac atactgtcac aggagagctt ccagggtctc
     2401 tgagctggtt ttcttcacag gcaaacatcc tgagggacct ttaagtaggg gagttcttta
     2461 ttctgatttg cctgcagaag taggaagact tgctatatca gtcctcagta ggactagaac
     2521 aatgctgtgt aataaaacaa ggtgaacctt taacttgcct accatactgg gactcctcac
     2581 ttcaccagtg caaatgtcca aactgttcgt gttgctcatt taaactcttg acattcccgc
     2641 tcccatcttt actcattcca aaatagctga tagcaaattc ttttcattca tttggtggca
     2701 aaacgtgtag tactaggaaa ctagggaggt gctttgacag ctctgtctca aaggcactga
     2761 ctgctcaggc aactcaaagg aaacggccgg ctggaagaaa ggctcctgag gatggcgcac
     2821 tggttttcag caacattcat agagactcgg gaggcagatg tggcctcaac ctggtgaaca
     2881 tatgttttga tttctttttt taggattgat gtggtgatgg tgtggctttc caaaatgggc
     2941 aaatattcaa gtcctagctc atcagtttct tgtgccagga atggaggaag ggaagtagat
     3001 ctacttccat atgtgctatt ctaggcatca cttcaaagtt cttgcggttt tcatttgttt
     3061 tgttttgttt taaaactggg cagagaggtt gtaccaggag tgatgacaga cctggaatgg
     3121 atgagggaag tgctgatgac attggaatgc ccaggatgca tggcccttac tgccagggtg
     3181 ggttccttca catacctagg atgaaggggt ctcatgctgc ctgccgaggg gaatgaaggc
     3241 tatgttattg acatgtgaca gcaggtgctc tcaggtgcca tggattgatg cagggtgctc
     3301 agctctggac tgaggtaccc acttccaatt tgtaaaacag tattgataca tagggctaca
     3361 ctcattactg ttcaagcgtt ctatgttaag agttgtttaa tttctaaaga tttaaagcaa
     3421 aatgcaaaaa aaaaaaaaaa atggtgctaa acttcacccc tgagcactca gtgagactgg
     3481 tcatgcaagc atctacagtg ccatgctcct caagcctgtt tttcttgtag aaatgttgcc
     3541 ctatcttgtc tttcccaatg tatagtgtgt gttttgtttt attgagggtg gggtagaata
     3601 cttgccattt aagaaaatga cagaaagacc cagaaaggtg gggttgggga atcggtaaac
     3661 aagaatccag ctagcaaggc ccagcatcac actgaagtgg gctcagtggt ttcagagtga
     3721 agtcgcctta ctcctgcaca ttccctcgtg ctcccaatgc agttctgcag tgcaaatgct
     3781 caagttcctc ctgccttgtc aaggagacct ggaaatcagc aaggaaaatt atttgcccca
     3841 aaagacatgg gctctattgg tgtcagtcct gacttgagca taggcattca caagttgaag
     3901 tacagtcttg gtcacctcat gggaacatgt ggcagatagc tctcaggaaa aagcaattgt
     3961 ggattgtcca cttgggggct ttgcataggg aggtcaagct ctgaattaga actgagctgc
     4021 cttccatacg ttgaccaaag cagtgataag ggtggccagt tagtggtagt ggaaagggac
     4081 cgtttcctgc cctgggtttc ctttagctat aggctgcaag gtccccactg ctctcagaga
     4141 gccagctaaa ctgctggctt ggtttggaat ttgtttcatc cctagctgtg agtgcctttt
     4201 ggtctggaaa gttggcttgt ctcatcatac ccacagctag gacatatact ctgtaattat
     4261 gaattgtcct tgttttcctg agctaaaagc gaatgtcttt gatcattaga gtttgttagt
     4321 gttgggttgt ttccactgtg aggttcttaa aatgtttttg cttcctaatg ttaaaataac
     4381 tcatgttaga aaccctgtac acatgaaaaa gggtttgtag ttgagacatt acgtatattt
     4441 tactgtttat aataaatcat ctatacaaaa gtcttgggtg ttaattttaa tattttgagc
     4501 aaaatctgtt ttccatgcta tgttaacatc tacaatttca ctaatagtgt tactttccat
     4561 tgatttctga agcctagaaa actgtttttg tgtgtttttt ttgttttgtt ttgttttgtt
     4621 tgtttccccg aagagattgt atggccttca ctgcaaagac ttcagaccaa ttacttgtat
     4681 tacacttggt tgcctcgtgg ctatataact tctgagtaca cgtcatcaag agtcctgaat
     4741 gaagtattgt agagaataaa tcataatgga caaaaactgt c
//
