LOCUS       NM_019496               5435 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus AMMECR nuclear protein 1 (Ammecr1), mRNA.
ACCESSION   NM_019496
VERSION     NM_019496.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5435)
  AUTHORS   Cox,B.J., Vollmer,M., Tamplin,O., Lu,M., Biechele,S.,
            Gertsenstein,M., van Campenhout,C., Floss,T., Kuhn,R., Wurst,W.,
            Lickert,H. and Rossant,J.
  TITLE     Phenotypic annotation of the mouse X chromosome
  JOURNAL   Genome Res 20 (8), 1154-1164 (2010)
   PUBMED   20548051
REFERENCE   2  (bases 1 to 5435)
  AUTHORS   Vitelli,F., Meloni,I., Fineschi,S., Favara,F., Tiziana
            Storlazzi,C., Rocchi,M. and Renieri,A.
  TITLE     Identification and characterization of mouse orthologs of the
            AMMECR1 and FACL4 genes deleted in AMME syndrome: orthology of
            Xq22.3 and MmuXF1-F3
  JOURNAL   Cytogenet Cell Genet 88 (3-4), 259-263 (2000)
   PUBMED   10828604
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731548.13 and AL731674.9.
            
            On Jul 26, 2018 this sequence version replaced NM_019496.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK051736.1, SRR13948564.1709596.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-519               AL731548.13        29397-29915         c
            520-630             AL731674.9         167232-167342       c
            631-745             AL731674.9         133169-133283       c
            746-836             AL731674.9         113940-114030       c
            837-933             AL731674.9         112535-112631       c
            934-5435            AL731674.9         106205-110706       c
FEATURES             Location/Qualifiers
     source          1..5435
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 63.74 cM"
     gene            1..5435
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /note="AMMECR nuclear protein 1"
                     /db_xref="GeneID:56068"
                     /db_xref="MGI:MGI:1860206"
     exon            1..519
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            520..630
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            631..745
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            746..836
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            837..933
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            934..5435
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5416..5421
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5435
                     /gene="Ammecr1"
                     /gene_synonym="6230420G18Rik"
                     /note="major polyA site"
ORIGIN      
        1 agactgttcc aagatggcgg cgggttgctg tggggtgaag aagcagaaac tgtccagttc
       61 gcccccctcc ggctcgggtg gtggtggtgg cgcctcctcc tcctctcact gcagcgggga
      121 gagccagtgc cgagccgggg agctgggact aggaggcgcc gggacgcggc tcaacggact
      181 gggcgggctg agcggcggcg gcggcagcgg cggcggcggt ggctgtcccc tctctccccc
      241 tcagggctgc ggcggcggcg gcggcggcgg cggcggcggc ggcagcggca gcggcggcgg
      301 gggcatctcg ctgtctccac ctctgagctg cggagtggga accctacttt ctactccggc
      361 cgccgccacc gcctcctcgc cgtcctcctc gtcctcatcc cccggctccc ggaagatggt
      421 ggtgtcagcg gagatgtgct gcttctgctt cgatgtgctc tactgtcacc tgtacggata
      481 ccagcagccc cggacccccc gcttcaccaa cgagccctac ccactgtttg taacatggaa
      541 gattggtcga gacaaaagac tgcgtggatg cataggtacc ttttctgcca tgaatttgca
      601 ttcaggactc agggagtaca cacttaccag tgcccttaaa gacagccgtt ttccaccaat
      661 gacaagggat gagctgccaa ggcttttctg ctcggtgtct ctgctcacta actttgaaga
      721 tgtttgcgac tatttggact gggaggtggg tgtgcatggc attagaatag aattcatcaa
      781 tgaaaaagga tcaaaacgca ccgccaccta cctaccggag gttgcaaagg agcaaggatg
      841 ggaccatatt cagaccatag actcattact gagaaaagga ggatacaaag ctccaattac
      901 taatgaattc agaaaaacca taaagctgac caggtaccgt agtgaaaaga tgaccttgag
      961 ttatgctgaa taccttgctc atcgccagca tcatcatttc caaaatggca tcgggcatcc
     1021 ccttccgcca tacaaccatt attcctgaca ctgagccgca caaccagtca ctgggcctct
     1081 ctgcagacct cttcccagga gaccctacac cttcttggtc tagctatctc ttttactgta
     1141 ccattttatg atgatagttt ccgttgccat ggtgaagctt cgacattgtt agttaagagc
     1201 atcatggtaa cgggtaggac aatggcattt gttaagaaga tcctgtttta ttattttaga
     1261 tcactgaatt tttttttcag cacatacagc ttttgaagtt ttctttcctt acaatattag
     1321 gtatcttttt ttgctttgct atctcagaca ggtttctgtc tttctttgtt cctttttttc
     1381 ttcctccttc cttcttttga ctgtggatgg aagaaagtat gctgtttctg agggtttatt
     1441 agatttgtct ttagtattct tcggtaagat tgtcattttt tgatagctga gttggggatt
     1501 aattcttaac aaattcaggt atttgtatat tactcatgaa tttgcctaaa attctatttg
     1561 ctatgacagc ttagtatttg ggtcaagtac acattttttc ccatggttga aatgagtgag
     1621 ctttagagta agtaatgaac attcagaggt ccatgatagg acttgtcaca gagagcaagg
     1681 aactgtttac gccttctgtg cttctgtgtt actgtagaag agactgcctc atgttataga
     1741 acaatttaca acctacaaca ctgttttaga aaagcataag ctacctttca aatgggccgc
     1801 ggaaatcatt gtgaaaggca gcatatattg ggaagagatt agatgcagaa cttagtgcct
     1861 ttgagaagac tataattaag tcaaattaag aggggtttaa aaaggcaatt tagagaatat
     1921 tcttataaaa ttttattgtt tctatataag aaacaacaga ttacacaaat tccttactcc
     1981 aaagtatttt tttagctgaa aaaaattatt ttgagcaaat aaccaaaaag acatttgtct
     2041 attttgtatt catttaaatt tgttagcttt aggtttcaat gagtcataat tggccagaga
     2101 caactttagc tactaagaca tgataaagat aatctagtga aacaaaagtt catacatact
     2161 atgatttcaa atttgtctat cacagagaca atgctgagtt tcagagatac tacaaagagt
     2221 ttgaatctct ttctgcacta cagccttttg atagaaacac atttctgtgt tgacagataa
     2281 tatggtagac ctgtaaagat ggcattcaga tatgttaatt agagcctagc tcatttgcag
     2341 ggctatactt cccatggcac aaagaaaact tactgatgtc aatgggaaac ccttttgttt
     2401 atccccagga aaactcatga tgattctggc aaaagatgac ctttgtttta tggtagtata
     2461 tatataggta tatagagata tatatatttg ggaaatatat aattttttca aacaggaagt
     2521 cattagaaca agtggtgagt gaaatgctgc agaatgtata ttctacaact atgacatacc
     2581 gctaattatt gaaatagtca agcttataca tttaattgct gtgacaagtg acagactggt
     2641 agttcagaaa atccttgtct agtttgtaat tggctgaatt cattgtcctt gccatcaggg
     2701 caaagtacac agcttcagtt tttgagagtt ctttgaagtt tggtatttct tcatccacag
     2761 aatccattgt tgacgtatcc attttcagtt atgatgcctt aactaagaag ctacttgcta
     2821 gcctgaaaga cagtctcagt agccagttcc attgaataca gagaaaacat aagctgctga
     2881 gctttagcat gggcttctaa gtcccgttgt ttctccttgg acacactttg tgggtggatt
     2941 agtctttcag tatagaagca agctgctacc tgacattttc ttgcccttat agggaaagtg
     3001 agcacaagct gaatgatatt gtctgctagg aaaagagaga gcgagcgaga gagagagaca
     3061 gagagagaga gagacagaaa gacagagaca gagagagaga agaaaggaaa ggggagaaag
     3121 aaaagaaaag gaaagagaaa cggaaaaaag agaagtaaag ataacataga aactgaagag
     3181 agacagacta gaccaatctt gttgtgaaat ccatctactc catcatctca tcatttcaga
     3241 gctcctcagc ccgggggagc gtacggctag ttttttgttg ttgttgttgt ttttaaagaa
     3301 aagatctatc acatacatat atgcgtgtat gtctccatat acttacacat gcatacatgc
     3361 atatgtgtgt gtttatgtat ttaacggtgc taatcaatct tgagcaggtc acgtgactgg
     3421 tcatgcggac tctaaaatca tatcagattt tttaaaaaat ccttgatata tgcagatatt
     3481 atacagattt tcttaccggt gtaataatgt tctactgaag aataaccatc ctgcaggctt
     3541 caaaggacga ggtcagcaat atttcccacc atggcttggg gggaaaggat agttttgtct
     3601 ccttttgtat tcaagttgat gcatagtgca tttttgtgtc taagtagctg ttgactaaaa
     3661 gactttgtag tgtaaagggt gttatacaaa ctataatggt gtgcttcaaa caaaccaatg
     3721 ctaggccctt tcactcttgt tgtatatgac aaagttgtta aatatgtggt ttgaaataac
     3781 tttgaacatg tggaaatatg tagcatgtgt ctttaactca gacaaagatt ctaattgcac
     3841 aagttgtgtt ctagccagtt gtggtttatt tgttcagaaa cacaaatgtg aattgtactc
     3901 tttatcacca gaatattgta tgagttccgt gatctttaaa cagctcagaa gtaatacttg
     3961 aacttcattt gaatagcaca aagtttacag agcccctttt aaatgttaat tagttccagt
     4021 taagttttcc tttaattttt tctttttttt ttttttttct tttttcaaat gcaactgggt
     4081 attttcttgg aaaacaatgt gtagtttatt tttggtatgt agcaaaaggc ttccaattct
     4141 ggaaggtttt attgttctta aacaaggtca gccaggtacc agattctaaa aagaacaatt
     4201 gccccccccc tcaagtggcc ttctgattgc acgaatgtgc tactcccctc tccaatcccc
     4261 cctcccttga ggaggtcagt gaaagtgatg gaggaagtgc aaggcttgct ctcccctccc
     4321 ctcccctccc ctccccccca cacctcacct aggatgtcca ctccaatgca aatggttcca
     4381 ttgcacacac agcacaccgc acaccgggaa gtttgtatac tggcctcttt tcctgtcttc
     4441 aaatgtgcaa gaatttgaaa gtgtcatctg gaataggttc catctcttat gtgtgttaga
     4501 gcaaaccaaa gaagccccca gccatgccca aatgctgctc caaaagcctg ccttccagtc
     4561 cttacaaaaa ccttgcagga ttaaatgtgt taactttttt atttttgtac agtttctaag
     4621 tgattttttg ctagtgatgt taaactgaat taagtttatt tgaggagtgt gagcacctcc
     4681 tccatttaaa taaactggtg actttccttt tcttttttac aagtggaaac ccattgtgtg
     4741 cctctcgatt taagggtttc tgattacatt tattcttaag accagcattg atcctttata
     4801 tacaaagata tgttttcctt gttttttatt actgtttcag aagaaaatga accttttatt
     4861 ttgctccaga cccagtaact gcgctggtac ttagacgcac tgagaaaaaa aaaaaaacaa
     4921 aataaaacaa acaaacaaaa aatacttttg taagcacctc tgaccgcttt tgtatatcaa
     4981 agttgattac ttttgagata tttggatcta gtttctaagt tattttagtg ttttatatgt
     5041 ttcccaaaat tcctttgaat cggtcaccag cataaagagt ttttggtgat gcaatggtga
     5101 gacttgtaac aagcaaaaag ctacctggag tagctctctc ctcccttctt agtaacctgg
     5161 tgttttgatt acagtgagac atcacaggtt atctaaaagc ccttcgttat aaccagctcc
     5221 tccctccctc cttccacact gaattgctta ctagtttgaa gaagttattg gaagtgggca
     5281 ttttatatga catgtatggc tttaaaatat taaaaatgaa caaaaaaaga gaaaaatatg
     5341 aaaaggttta tgtgggtctg taaggtatgg ctgtggaaag acattgtagt agctttgaca
     5401 ctattgttat tacccaataa aatgttaaaa atgaa
//
