LOCUS       XM_006513529            2677 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ALX homeobox 1 (Alx1), transcript variant
            X2, mRNA.
ACCESSION   XM_006513529
VERSION     XM_006513529.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006513529.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..2677
                     /gene="Alx1"
                     /gene_synonym="C130005I02; Cart1"
                     /note="ALX homeobox 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 34 ESTs, 9 long
                     SRA reads, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:216285"
                     /db_xref="MGI:MGI:104621"
     CDS             642..1622
                     /gene="Alx1"
                     /gene_synonym="C130005I02; Cart1"
                     /codon_start=1
                     /product="ALX homeobox protein 1 isoform X1"
                     /protein_id="XP_006513592.1"
                     /db_xref="GeneID:216285"
                     /db_xref="MGI:MGI:104621"
                     /translation="MEFLSEKFALKSPPSKNSDFYMGTGGALEHVMETLDNESFYGKA
                     TAGKCVQAFGPLPRAEHHVRLDRTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNNL
                     RMSPVKGMPEKSELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVY
                     VREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSY
                     PQIQNNLWAGNASGGSVVTSCMLPRDASSCMTPYSHSPRTDSSYTGFSNHQNQFSHVP
                     LNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM"
ORIGIN      
        1 aggggtttca gggccacttg tctctatgaa ttttcaataa tagtaataat aataacaaca
       61 acaacaacaa tacattttgt cctaatgatt cgtgtggacc aagaatgagg tggttattgt
      121 ttggtattgg taaaatcaaa tattcaaaga ctctccctca accttccatt ccgttagatg
      181 ccactgcatc cttactccgg tgcatccgac agcaaacgag aaggccaggg ccttgtaagg
      241 gagagcgctg cggccgccac gacgccagcc ttttaggctc ctcggcaatg ccagtcccac
      301 tgtcgaggcg actacgattc tgggtgtcct tgtctctcct ggcatttgtc tgaaatggaa
      361 ctgtctgtct gaactaggcc ggggacgcgc cctaccctgg gactgggagg ttgccggagg
      421 agcccagctg agtttcaaga tataaaagca acttcgggtg ccccttctgc agccgggacg
      481 tattaagagt ctgggagctg ggcagctcct ggcgtcgcag gtctcgcttc ccctttccct
      541 cctctctgac cctccctact cccgcccact gctccctcct ccctccgcgc cctccagcct
      601 ccgcacgccc cggagagctc gcggacagcc tttccaggat tatggagttt ctgagcgaga
      661 agtttgccct gaagagcccg ccaagtaaaa acagtgactt ttacatgggc acaggaggcg
      721 cgttggagca cgttatggag acgctggaca atgagtcctt ttacggcaaa gcgacggctg
      781 gcaaatgcgt gcaggccttc gggccgctgc cgcgagcgga gcatcacgtg cgcctggaca
      841 ggacttcgcc ctgtcaggac agcagcgtga actatggaat caccaaagtg gaaggacagc
      901 cccttcacac cgagctgaat agagcaatgg ataactgcaa caatctcagg atgtctcccg
      961 tgaaagggat gccagagaag agcgaactgg atgaacttgg ggacaaatgt gacagcaatg
     1021 tatccagcag caaaaagagg agacaccgaa ctacctttac cagtttgcag ctggaggaac
     1081 tggagaaagt tttccagaaa acccattacc cagatgtata tgtcagagaa caacttgccc
     1141 tgagaacgga gctcactgag gccagggtcc aggtttggtt tcaaaatcga agggccaagt
     1201 ggagaaaaag agaacgatac ggccaaatac agcaagctaa aagccatttc gctgccacgt
     1261 acgacatatc agtcttacca aggacggaca gctacccaca gatccagaac aatttgtggg
     1321 caggaaatgc tagcggtggt tctgtggtta cgtcatgcat gctaccacgt gacgcgtcct
     1381 cctgcatgac accttactct cactcgcctc ggacagattc cagttatacg gggttttcga
     1441 accaccagaa tcagttcagc cacgtgcccc tcaataattt tttcactgac tctcttctca
     1501 ctggagctac caacggacac gcatttgaaa caaagccgga gtttgaaagg aggtcttcca
     1561 gtatcgctgt tctgagaatg aaggccaagg agcacaccgc caatatttca tgggccatgt
     1621 aacatacagt actcttttat ttttcttttc atagcaaagt aaaacattct tatttctcgt
     1681 atttaaagga taccacaata agctgctgtg tgtggaaggg ctaaaggtca agatatacgg
     1741 tgagaccagc ttacatgaat agttgttatt atttaacatt taaatctaag aatggatccc
     1801 tgaaaggact aaataggttt accatgcacc agcctccaca gactctgttt tagtagtaag
     1861 ttttttggtt tttttttttt tcctattgta caagtcaatg aaatatggtc aggcaacttc
     1921 ttaaaggaat aaatgtatta aacaaatcct tctgtgatag attgatttat gcttgttctg
     1981 tataacaaga aatcccttgt aaagtgatac ctgataaacg aggaaacacc ccggggggaa
     2041 aaaggcagta ttgatacagg gggctttgag agctaatgcc attttcaatt ctttggctcc
     2101 aagacacaat ggtcatacac tctgttgcag cctcaagatt cttttctttt aacctttcaa
     2161 tgttttggtg aatttccact cagtcggaaa aaaaagtcct tctgaactgc tctgtatttg
     2221 catggatatc tgggcacagt ttcttgcaac catgtggtta aaggtgacaa ctgaagtatt
     2281 cgcgtatgat ttaaagtcta gtcaactgga caggatttat aaatccaact ttcaattgaa
     2341 gaggccagca ggcagactgc aattttgtga ttaaaactga gaactcatta gtaaacgtgc
     2401 tgttgctttt atactaaaat catgttgatt caatcgcata caaacgtatc ttgcaaataa
     2461 agggtaactt ttcgattaaa ggagtaacag attggaattt atgtttgttt tgtgggccta
     2521 tgcatgttca aatgcatgcc tgtttggcct tgacactctg tgccttaagc atttttgcta
     2581 ctgtgctatc catagagaat taaaatgtca ggaggtgctc tagaatttct tgttaaaaat
     2641 aaaaagaaga agacaaatac attgcatctg gaaaatg
//
