LOCUS       NM_053156               1505 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus allantoicase (Allc), transcript variant 1, mRNA.
ACCESSION   NM_053156
VERSION     NM_053156.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Sun,J., Lu,Y., Nozawa,K., Xu,Z., Morohoshi,A., Castaneda,J.M.,
            Noda,T., Miyata,H., Abbasi,F., Shawki,H.H., Takahashi,S.,
            Devlin,D.J., Yu,Z., Matzuk,R.M., Garcia,T.X., Matzuk,M.M. and
            Ikawa,M.
  TITLE     CRISPR/Cas9-based genome editing in mice uncovers 13 testis- or
            epididymis-enriched genes individually dispensable for male
            reproductiondagger
  JOURNAL   Biol Reprod 103 (2), 183-194 (2020)
   PUBMED   32588039
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Vigetti,D., Binelli,G., Monetti,C., Prati,M., Bernardini,G. and
            Gornati,R.
  TITLE     Selective pressure on the allantoicase gene during vertebrate
            evolution
  JOURNAL   J Mol Evol 57 (6), 650-658 (2003)
   PUBMED   14745534
REFERENCE   3  (bases 1 to 1505)
  AUTHORS   Vigetti,D., Monetti,C., Prati,M., Gornati,R. and Bernardini,G.
  TITLE     Genomic organization and chromosome localization of the murine and
            human allantoicase gene
  JOURNAL   Gene 289 (1-2), 13-17 (2002)
   PUBMED   12036579
REFERENCE   4  (bases 1 to 1505)
  AUTHORS   Vigetti,D., Pollegioni,L., Monetti,C., Prati,M., Bernardini,G. and
            Gornati,R.
  TITLE     Property comparison of recombinant amphibian and mammalian
            allantoicases
  JOURNAL   FEBS Lett 512 (1-3), 323-328 (2002)
   PUBMED   11852104
  REMARK    GeneRIF: The loss of allantoicase activity in mouse is due to a low
            substrate affinity and to a reduced expression level of the enzyme.
REFERENCE   5  (bases 1 to 1505)
  AUTHORS   Vigetti,D., Monetti,C. and Bernardini,G.
  TITLE     Molecular cloning of mouse allantoicase cDNA
  JOURNAL   Biochim Biophys Acta 1519 (1-2), 117-121 (2001)
   PUBMED   11406280
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165283.2, BC108958.1 and BB572657.1.
            
            On Jun 15, 2018 this sequence version replaced NM_053156.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC108957.1, AF278712.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                AC165283.2         119457-119501       c
            46-148              BC108958.1         1-103
            149-221             BB572657.1         146-218
            222-779             BC108958.1         177-734
            780-780             AC165283.2         96967-96967         c
            781-808             BC108958.1         736-763
            809-809             AC165283.2         96938-96938         c
            810-1448            BC108958.1         765-1403
            1449-1500           BC108958.1         1409-1460
            1501-1505           AC165283.2         90728-90732         c
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 10.97 cM"
     gene            1..1505
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /note="allantoicase"
                     /db_xref="GeneID:94041"
                     /db_xref="MGI:MGI:2136971"
     exon            1..64
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            65..267
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            268..318
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            319..406
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            407..535
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            536..615
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            616..748
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            749..904
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            905..978
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1087
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            1088..1212
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1505
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1484..1489
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /note="hexamer: AATAAA"
     polyA_site      1505
                     /gene="Allc"
                     /gene_synonym="1700012B22Rik; Alc"
                     /note="major polyA site"
ORIGIN      
        1 acttcaaaac actggactgt ggggagaggc cttgaatcct gaagactggg gtctgcactc
       61 ttgggtgaag aacagccctt cattgcctca cccctgaggg cccccaggca tggtttctga
      121 gacctcctca ctcttgaaac ttcctggcta ttcctgccct tctcaactct aggaagcatg
      181 actgatactc caaaggaggg aaaactgacc agatttctgg acttcacgca gctgattgat
      241 ttggcctctg agtgcgtggg aggaaaggtt ttgtttgcga cggatgactt tttcggtcct
      301 gcagagaatc tcataaagag cgacagtcca acttttaagg aacatgaata cactgagttt
      361 ggcaaatggg tggatggatg ggagaccaga cgtaagcgaa ttccaggtca tgactggtgt
      421 gtcatccaac tggggataca gggcattatt cgtggtatcg acgtggacat ttcttacttc
      481 tcagggaacc atgctcctcg catgtcaatc caagcagcga acctgagtga agaagataca
      541 atgtcaaaca tcccaccaag gggagttagg atgggaactg cagcgacgcc tgaggagttt
      601 gaagccgtta ctgagctgaa atcacactcc tgggattacc tggttcccat gtcggagctt
      661 aagctagggg accctgactc cagccacaac tattattttg ttaattccca gcagagatgg
      721 actcatataa gactcaacat cttcccagat ggtggtgttg cacgccttcg agtatacggt
      781 actggacaga gggactgggc tgcattggat tccacagaac ctgtagacct ggtagccatt
      841 gcttttgggg gtgtctgtgt gggatttagt aatgcacact ttggacatcc aaataatatg
      901 ataggtgtcg gtgaacccaa gtccatagca gatggttggg aaactgcaag aagactggac
      961 agacccccgg tgttagaagc tagtgagaat ggccttctcc tggtcccggg ttgtgagtgg
     1021 gcagtgttcc gattggcaca tcctggagtc atcactcaaa ttgaaattga tacgaagtac
     1081 tttaaaggca actgtcccaa cagctgcaaa gtggatgggt gcatcctgac cacactggaa
     1141 gaggaagaca tgatcaggca taattggaat cttcctgccc ataagtggaa gtcgttgctt
     1201 ccagtcacca agctaattcc caaccaaaat cacttgttgg acagcctgac cctggagctt
     1261 caggatgtca tcactcatgc catgattacc attgcccctg atggcggtgt cagccgcctt
     1321 cggctcaagg gtttccctag ttccatctgt ttgctgcggc ccctccggga gaagcccttg
     1381 ctgcggttct ctcttaaaac gggattcagg gcgaaccttt aaagagctca tccaccatag
     1441 tacataccca ctgtcttcag tgttctgaac acctggtggt tccaataaaa cgatcacccc
     1501 acaaa
//
