LOCUS       NM_133981               2695 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ALG9 alpha-1,2-mannosyltransferase (Alg9), transcript
            variant 1, mRNA.
ACCESSION   NM_133981
VERSION     NM_133981.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2695)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123614.6.
            
            On Feb 4, 2022 this sequence version replaced NM_133981.2.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript for this locus.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC021791.1, AK050335.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               AC123614.6         120823-121033
            212-347             AC123614.6         122059-122194
            348-482             AC123614.6         124485-124619
            483-553             AC123614.6         128773-128843
            554-642             AC123614.6         133668-133756
            643-778             AC123614.6         135012-135147
            779-866             AC123614.6         137578-137665
            867-972             AC123614.6         137817-137922
            973-1095            AC123614.6         145634-145756
            1096-1250           AC123614.6         147453-147607
            1251-1380           AC123614.6         150817-150946
            1381-1528           AC123614.6         151737-151884
            1529-1658           AC123614.6         154192-154321
            1659-1789           AC123614.6         168100-168230
            1790-2695           AC123614.6         188249-189154
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 27.75 cM"
     gene            1..2695
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /note="ALG9 alpha-1,2-mannosyltransferase"
                     /db_xref="GeneID:102580"
                     /db_xref="MGI:MGI:1924753"
     exon            1..211
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1913
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /EC_number="2.4.1.259"
                     /EC_number="2.4.1.261"
                     /note="asparagine-linked glycosylation 9 protein;
                     disrupted in bipolar disorder protein 1 homolog;
                     asparagine-linked glycosylation protein 9 homolog;
                     disrupted in bipolar disorder 1 homolog;
                     dol-P-Man:Man(6)GlcNAc(2)-PP-Dol
                     alpha-1,2-mannosyltransferase;
                     dol-P-Man:Man(8)GlcNAc(2)-PP-Dol
                     alpha-1,2-mannosyltransferase; asparagine-linked
                     glycosylation 9 homolog (yeast, alpha 1,2
                     mannosyltransferase); asparagine-linked glycosylation 9
                     (alpha 1,2 mannosyltransferase)"
                     /codon_start=1
                     /product="alpha-1,2-mannosyltransferase ALG9"
                     /protein_id="NP_598742.1"
                     /db_xref="CCDS:CCDS23175.1"
                     /db_xref="GeneID:102580"
                     /db_xref="MGI:MGI:1924753"
                     /translation="MASRRARQRLKGGGGGGGGGGDAGPAAEKLEQLGSREAGAEPRP
                     ESGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQT
                     WEYSPVYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCVCELYFYKA
                     VCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTPIAVLG
                     VAAGAILGWPFSAALGLPIAFDLLARKHRWKSFLLWSLVALALFLVPVVVIDSYYYGK
                     LVVAPLNIVLYNVFTSHGPDLYGTEPWYFYLINGFLNFNVAFALALLVLPLTFLMEYL
                     LQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQK
                     CYHFVFQRYRLEHYTVTSNWLALGTVFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIA
                     TDPTIHTVPEGRPVNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQLPKPFAEGPLA
                     TRTVPTHMNDQNREEPSRYIDISKCHYLVDLDTMRETPREPNYSSHREEWVSLAHRPF
                     LDASRSSKLLRAFYVPFLSDQYTVYVNYTILKPRKAKPSRKKSGG"
     exon            212..347
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            348..482
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            483..553
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            554..642
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            643..778
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            779..866
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            867..972
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1095
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1250
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1380
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1381..1528
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..1658
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1659..1789
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1790..2695
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2565..2570
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /note="hexamer: ATTATA"
     polyA_site      2584
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /note="major polyA site"
     regulatory      2674..2679
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
                     /note="hexamer: AATAGA"
     polyA_site      2695
                     /gene="Alg9"
                     /gene_synonym="8230402H15Rik; B430313H07Rik; Dibd1"
ORIGIN      
        1 gttttccagc caagcaatgt ctgcgccttc gccgatttcg tagcgtgccg agttctatcc
       61 tttccccgac gctgggcatg gcgagccgaa gggcccggca gcgcctcaag ggtggcggcg
      121 gcggtggcgg cggcggtggg gatgcgggcc cggcggcgga gaagctggaa cagctcggca
      181 gccgggaggc aggcgcagag ccgcggccag agtctggaaa taaagcaggg caagtctggg
      241 cccctgaagg atccactgct ttcaagtgtc tgctctcagc gaggttgtgc gcagcccttc
      301 tgagcaacat ctcggactgt gatgaaacat tcaactactg ggaaccaaca cactacctca
      361 tctacgggaa gggattccag acatgggaat attcccccgt gtatgccatc cgctcatatg
      421 cttacctgct gctgcacgcc tggccagctg catttcatgc acggattctg cagactaaca
      481 agattcttgt attctacttt ttgagatgtc tcctggcttt tgtgagctgt gtttgtgaac
      541 tttactttta taaggctgtg tgcaagaagt ttgggctgca tgtgagtcga atgatgctgg
      601 ccttcctggt gctcagcacg ggcatgttct gctcatcatc tgcattcctc cccagcagct
      661 tctgcatgta caccacgctg atcgccatga cgggatggta tatggacaag acacccattg
      721 ctgtgctggg agtagcagct ggtgccatct tagggtggcc gtttagtgca gctcttggtt
      781 tacccatcgc cttcgacttg ctggccagga agcacaggtg gaagagtttt ctcctctggt
      841 ccctggtggc cctggctctc ttcttggtgc ccgtggtggt cattgacagc tactattacg
      901 ggaagttggt ggttgcccct ctcaacattg ttttgtataa cgtctttacg tctcatggac
      961 ctgatcttta tggtacagaa ccatggtatt tctatttaat caatggattt ctgaacttca
     1021 atgttgcctt tgctttggct cttctggttt tgccactgac tttccttatg gagtacctgc
     1081 tgcagaggtt ccatgttcag aatttaggac acccgtattg gctgaccttg gcgccaatgt
     1141 atatttggtt tataattttc ttcatccagc ctcataaaga agagcgcttt ctcttcccag
     1201 tctatccgct catatgcctc tgtggtgctg ttgctctttc tgcacttcag aaatgctacc
     1261 actttgtgtt tcaacgatac cgcctggagc attacacggt gacgtccaac tggctggcgc
     1321 tgggcacagt tttcctgttt gggctcttgt cgttctcccg ctctgtggct ctgttcagag
     1381 gataccacgg gccccttgat ttatatccag aattttacag aattgccaca gacccaacca
     1441 tccacactgt cccagaaggc aggcccgtga acgtctgtgt gggaaaagag tggtatcgat
     1501 ttcccagtag cttccttctg cctgacaatt ggcagcttca gttcattcca tcagagttca
     1561 gaggtcagct accaaagcct ttcgcagagg gaccactggc caccaggact gttcccactc
     1621 acatgaacga ccagaaccga gaggagcctt ccagatacat tgacatcagc aaatgccatt
     1681 acttagtgga tttggatacc atgagagaaa cacctcggga gccaaactac tcatcccaca
     1741 gagaagagtg ggtcagcctg gctcacagac cattcctgga tgcgtctagg tcttccaagt
     1801 tgcttcgggc attctatgtt cccttcctgt cagatcagta cacggtgtat gtgaactaca
     1861 ccatcctgaa gcctcggaaa gcaaagccga gcaggaagaa aagtggaggt tagcaccccg
     1921 gtgactccag aggacagcct gtgctaacta gggcttccac ggagccgact tcctccaagg
     1981 catcctgtta gagctgtaat aaaggtcgtc caccaagagt gccagaagct ggtgctctga
     2041 gctcgtcatg gtctatgtca aagtctaatc aaagtcacac acttcctgct cctgggtctg
     2101 ttctgcatgt gagctctctg cagataggca cagtcctaac tcctggggaa gtccagtgct
     2161 ccactccacc ttgttctcca tgtaggtact cactggaggg agaagagtag aacgtgcttg
     2221 cagaaactgc gagaggacct aactcggtgt gggctagcct tctccactct ctggccagca
     2281 tctgagaact accaagcctc ccttagacta caaggtttct ctctcagagc tgtttggcaa
     2341 cttctagcag gccttcttca aatcctactg ctgaaaagca gctcagccta gttgccaacc
     2401 agatatggcc ttttcccggc agcaagacgt ggcttctaaa gtgttcccag gactgacact
     2461 gtcctgaagc tcaggaaaaa ggcgaccact gaagaactgt gacctaatca tattatttaa
     2521 tgatgccttt aactttcctt ttattttctt taaaactggt cttaattata tggctttttg
     2581 ggaagtgttt taagattttt ttaatgtttc agtctgcttt attgaattct agactctgta
     2641 tatatagggc gtctttggag aaaaaggtgt atcaatagat ttgggtgaca acaca
//
