LOCUS       NM_001005424            4901 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus apical junction component 1 (Ajm1), transcript variant
            1, mRNA.
ACCESSION   NM_001005424 XM_355318
VERSION     NM_001005424.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4901)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   2  (bases 1 to 4901)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   3  (bases 1 to 4901)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732590.7.
            
            On Jan 6, 2022 this sequence version replaced NM_001005424.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.287772.1,
                                           ERR2680377.1018684.1 [ECO:0000332]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               AL732590.7         76223-76385         c
            164-4901            AL732590.7         70053-74790         c
FEATURES             Location/Qualifiers
     source          1..4901
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 17.44 cM"
     gene            1..4901
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="apical junction component 1"
                     /db_xref="GeneID:381353"
                     /db_xref="MGI:MGI:2685842"
     exon            1..163
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /inference="alignment:Splign:2.1.0"
     exon            164..4901
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /inference="alignment:Splign:2.1.0"
     CDS             420..3344
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="Uncharacterized protein C9orf172 homolog"
                     /codon_start=1
                     /product="apical junction component 1 homolog"
                     /protein_id="NP_001005424.2"
                     /db_xref="CCDS:CCDS50532.1"
                     /db_xref="GeneID:381353"
                     /db_xref="MGI:MGI:2685842"
                     /translation="MTRTDPPDLLVSTVYQDIKVVDPGLTSKRQPCERSVARPAAPTP
                     FNKRHCRSFDFLEALDEPTMETHPEPPPPEPAPPRARPRDSEPRRRTRSKSAPRASQG
                     LATAPASPPVLQRRGREAQRAVRVEGSPRREPSYPALRALANELHPIKLQPQRGGPGR
                     IAPLCATPGRCAPPEPPSGPVPHVRCRLDIKPDEAVLQHAARSSRSCAPRETTSWART
                     APQFHGLTVPGPRHVALSRTPTPSDLYCTDPRTLYCDGPLPGPRDYLEHRSQPFTTPP
                     GPTQFFYTEEPEGYAGSFTTSPGLPFDGYCSRPYLSEEPPRPSPRRGGSYYAGEVRTF
                     PIQEPPSRSYYGETTRAYGMPFVPRYVPEEPRAHPGARTFYTEDFGRYRERDVLARTY
                     PHPRSSPPWADWGPRPYRTLQVMPPPAPGPLLASWHGGTGTSPPRLATDSRHYSRSWD
                     NILAPGPRREDPLGRGRSYENLLGREVRDTRGSSPEGRRPPVVVNLSTSPRRYAALSL
                     SETSLTEKGRAGESLGRNWYVTPEITITDNDLRSVDRPTAKGWELPGGRPRQPVSTVP
                     EGPASSRQRSLEQLDELITDLVIDSRSPAQAPEPAAEGLGRQLRRLLDSRAAGPGGAT
                     LLAPSRSPPASAGSTEEPTGSGEAADASPEPSADEDDLMTCSNARCRRTETMFNACLY
                     FKSCHSCYTYYCSRLCRREDWDAHKARCVYGRVGSVCRHVLQFCRDSSPVHRAFSRIA
                     RVGFLSRGRGVLFLGFPSPGSADNFLRFGLEGLLLSPTYLSLRELATHAAPLGSYARE
                     LAAAGRLYEPAECFLLSVSVAVGPSAAPPGAAARPAPRTPGPTVRKFAKVALAAGSPT
                     RPPPARGGEPDMETLILTPPPGTAGLDEEGEAGRRAREVAFIHIQRELRMRGVFLRHE
                     FPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRPFMCMIMAASEPRALDWVASANLLDD
                     IM"
     polyA_site      3837
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="major polyA site"
     regulatory      4866..4871
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="hexamer: AGTAAA"
     regulatory      4871..4876
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="hexamer: AATAGA"
     polyA_site      4887
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
                     /note="major polyA site"
     polyA_site      4901
                     /gene="Ajm1"
                     /gene_synonym="Gm996"
ORIGIN      
        1 agtactgagc cgccaggcca ggatcacagc tgctgcctcc aagcttctgc tggtaccggg
       61 tgtatgtata tatatatata tatttatagc ggggccaggt acacactggg accgacctgg
      121 gctatgcaga ctactcgggc tcggctcgtg gagtaatcac caggtcgcat ggactgtgag
      181 ctttctcctg caggtacatc taacataggc atggaggcag caccagaagc cttgaccatg
      241 acctgcagcc aaggctgcac catcccctat gccccaggta agccggacca gcacgtgggg
      301 tggggtgggg taaagggctt ggggtgcaga ggaggctgcc ctgaccggta tctcctccca
      361 gggcaaaatc cccgaaaggc cgtgtgactg gagctgccag cctggggacg tcttttaaga
      421 tgacccgcac ggacccgccg gacttgctgg tgtcgaccgt gtaccaggac atcaaggtgg
      481 tggacccagg gctcacgtcc aaacgccagc catgtgagcg atccgtggcc cggcctgctg
      541 cgcccacgcc tttcaacaag cgccactgcc gtagttttga cttcttagag gcactggacg
      601 agcccaccat ggagacacac ccagagccgc cacctcctga acctgcgcca ccgcgcgccc
      661 gacccagaga cagcgagcct cggcgccgca cccgttccaa gagcgcgccc cgtgcgtccc
      721 aaggcctggc gactgctcca gcttcgccgc ccgtactgca acgcagaggt cgggaagccc
      781 agcgtgcagt gcgggtggag gggtcgccgc gccgggagcc ctcgtatcct gcgctgagag
      841 ctctcgctaa tgagctgcac cccatcaagc tccagccaca gcggggaggc cccggacgca
      901 tcgcgcctct atgcgccacc ccaggccgct gcgcaccacc ggaaccaccc tctggacctg
      961 tcccccatgt ccgctgccgt ttggacatca agccggacga ggcagtgctg cagcacgccg
     1021 cccgaagctc gcgatcttgc gcacctagag agacgacgtc ctgggctcgc acagctccac
     1081 agttccatgg cctcacagtt cccggccctc gccacgtggc cctgtcacgc actcctaccc
     1141 ccagtgactt gtactgtact gaccccagaa ctctgtactg tgacgggcca ctgcctgggc
     1201 cccgggacta cttggagcac cgcagtcaac ccttcacaac gcctccaggt cccacccaat
     1261 tcttctacac cgaggagcca gagggctacg caggcagctt taccacaagc cccggccttc
     1321 cctttgatgg ctactgttcc aggccctact tgtccgaaga accccctaga cccagtccaa
     1381 ggcgtggggg cagctactat gctggcgaag tacgcacctt cccgatccag gagcccccct
     1441 cccgctccta ctacggggag acaactcgag cctacggtat gcctttcgtt ccccggtatg
     1501 tcccagaaga gccccgggcg caccctggag cccgcacttt ctacaccgag gactttggga
     1561 ggtaccgaga acgcgatgta ctggctcgga cttacccgca cccgcgcagc agcccaccct
     1621 gggctgactg gggtccgagg ccttaccgca cccttcaggt aatgccgcct cccgcccctg
     1681 gaccactgtt ggcctcgtgg cacggcggca ccggcacaag cccaccccgg ctggccaccg
     1741 atagccgcca ctactctcga tcctgggaca acatcctagc tcctggtcct cgtcgtgaag
     1801 atcctctagg acgcggccgc agctatgaga acctcctggg acgcgaggtt cgggatacga
     1861 ggggttcatc ccctgaaggt cggcgtccac cagtcgtagt gaatttgtcc acctcaccca
     1921 gacgctatgc agcactgtcg ctgtccgaga cgtcgctgac agagaagggc cgcgcgggag
     1981 agagcctggg ccgcaactgg tacgtcacgc cagagattac catcacagac aacgacctgc
     2041 gctcagtgga tcgcccgact gccaagggct gggaattgcc tggaggccga ccacggcagc
     2101 ccgtatccac ggtccctgag ggtcctgctt caagccgcca gcgcagcctc gagcagctgg
     2161 acgagctcat cactgacctg gtcatcgact cacggtcgcc agcccaggcc ccggagcctg
     2221 ccgccgaagg tttaggccgc caactacgcc gcctgctgga ctcacgggct gcaggccctg
     2281 gaggggccac cctgctggcg ccatcgcgct cgcccccggc ctcggctggc agcactgaag
     2341 agcccaccgg ctcgggggag gcagcggacg cctcccccga gcccagcgca gacgaggatg
     2401 acttgatgac ctgctccaac gcgcgctgcc ggcggacaga gaccatgttc aacgcctgcc
     2461 tctacttcaa gtcgtgccac agctgctata cctactactg ctcgcgtctg tgccgccgag
     2521 aggactggga cgcgcacaag gcgcgttgcg tgtacggccg cgtgggcagc gtgtgccgcc
     2581 acgtgctgca gttctgccgc gacagcagcc cagtgcatcg cgccttctct cgcatagcgc
     2641 gcgtcggatt cctgtcgcga ggccgtggcg tgctgttctt gggcttcccg agcccaggct
     2701 ctgccgacaa cttcctacgc tttggcctcg aagggttgct gttatcgccc acctacctgt
     2761 cgctgcgtga gctggctaca catgcggcgc ccctgggtag ctatgcacga gagctggcgg
     2821 cagcaggaag gctctatgag ccggcagagt gcttcctgct tagcgtgtcc gtggctgtgg
     2881 gccccagcgc tgcacccccc ggagccgctg cccggcccgc gccgcgcact cctgggccca
     2941 cggtgcgcaa gttcgccaag gtggctctgg ccgctggcag cccgacgcgt cctcctcctg
     3001 cgcgtggcgg agagccagat atggaaacct tgatcctgac gccaccccca ggtactgcgg
     3061 gcctggacga agaaggtgag gccggccggc gcgcacgtga agtagccttc atccatatcc
     3121 aacgtgagct tcgaatgcgc ggcgtcttcc tccgccacga attcccacgg gtctatgagc
     3181 agctctgtga gtttgtggaa gctaaccggc gcttcacgcc cacaaccatc tatcccacgg
     3241 atcggcgcac tggccgcccc ttcatgtgca tgatcatggc tgcatcggag ccgcgtgcac
     3301 tagattgggt agccagcgcc aacctgctgg acgacatcat gtgaaccatg gaactattag
     3361 gcccaggccc cgaccccgag ccctgcctac tctactcagg ccctgcctga tccatcacga
     3421 aggcccccag agtctggacc agttggttca gcgccttcca aatcccctgg gcctccttta
     3481 gtcttataca aattctctgc cctgagctcc acccactcca cacctctaat tttgcctggg
     3541 agcccccacc cccacccctg tcccgtttcc aaccagctgc ttcttttctt ctctgttcgt
     3601 aaccgggcca tccaaattcc acatcctggg ctctccccaa gccagtcaag gagagggggc
     3661 tccccaaggg cccggtcctc gccctcggtg ctccccactg ggaggtgggg tgggactgag
     3721 gacctctggg ctctgcctgc tacactcatc ccatggggac aaactcagtt ggtgtatgtt
     3781 gtgggtgctt gctatagctc tccaaccctt ctagtccaga aatccatgtt aaccaaagcc
     3841 cgatgtcctt acttcgagca cttcccctaa ccctcctgtc tggggtgtat caggctcaga
     3901 gggctactcc ctgtgcaccc ctatgaggtt gaggcaatgg gcgtagccag cactgtacac
     3961 gtaccagtgc cgcctgtcct tcaatactct caccttagtc tgggcacttg tagacaagtt
     4021 ggaatactgg ggaattttca ggttaaggcc aaggtacaat ccaccctgcc agatggaagc
     4081 ctgagcaggg gaagcagtgt gggcggcgac ccaaccagag ttaagatctg ggtaaggatt
     4141 tgagctccca acacctaccc aacaagatgg ccttaaaaat ctgccttcca gagaagatgg
     4201 agaggtggga agcgtgtgct gacgaattag cagacaaccc tactgagagc agctcctacc
     4261 acggaatgac ttgggaatga gtaaggaaca gggctgtccc taattaggaa ctggactagg
     4321 aaaggtgctt agtagtgagc caccaagtgt gggtacggtt aaggagtcgg tgccgaggcc
     4381 tgccccgaat ccaatcctgt gtgcaaaagt gccctggctg cactccaagc tgagagagaa
     4441 gccaaagcct gacgtgttgt ggagaggtct aggcttccct aagccccttg cctgaccccg
     4501 tacctggatc tgagcccagg actttgtgga gggtgtgacc cagagagggc ttgcgaccag
     4561 attctccaag aatcttggga gaagaagaag ccccaagccc ttaggagctc tgaaagttca
     4621 attgcaagaa cctgggacac acacctatgc acgagggtgt gcacacgcgc cagctaccct
     4681 cgactggatg tccccgggac actccagctc tctctccttg gcccctgtct tagcacatgc
     4741 ccggatgccg ctcttgcaac acttgctgcc ccgccgcctg ccgccctccc caggggctcc
     4801 acagtccctc ctgcggcaga ctggcaagaa cgcctctgac gagaagggca agtgctttcg
     4861 aaccaagtaa aatagaactt gaatgtagct gctgctaata a
//
