LOCUS       NM_177573               2942 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus AFG2 interacting ribosome maturation factor (Airim),
            transcript variant 1, mRNA.
ACCESSION   NM_177573
VERSION     NM_177573.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606933.4 and AK158126.1.
            
            On Sep 7, 2006 this sequence version replaced NM_177573.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. Variants 1-3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158126.1, SRR1660817.300999.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                AL606933.4         176955-176980
            27-2473             AK158126.1         2-2448
            2474-2942           AL606933.4         184100-184568
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 57.94 cM"
     gene            1..2942
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /note="AFG2 interacting ribosome maturation factor"
                     /db_xref="GeneID:194268"
                     /db_xref="MGI:MGI:3041172"
     exon            1..286
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /inference="alignment:Splign:2.1.0"
     exon            287..564
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /inference="alignment:Splign:2.1.0"
     exon            565..744
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /inference="alignment:Splign:2.1.0"
     exon            745..863
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /inference="alignment:Splign:2.1.0"
     exon            864..2942
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2914..2919
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /note="hexamer: AATAAA"
     polyA_site      2937
                     /gene="Airim"
                     /gene_synonym="9930104L06Rik; C1orf109"
                     /note="major polyA site"
ORIGIN      
        1 atcttttcgc gactccagag tcgtgctaac tggaagtaga gtggtgagtt cgttcttgtg
       61 aataagcgcg gtgtagtttt tgatgtactc agcgttgaca tcgcaggatt tacgttttcc
      121 tgttgattta gggctggaaa tcttaaagag aggcgacaag actgactcca gaagcacagg
      181 tcccggaaca gacagacccc agagactcgc agtctaaagc agattgccct gtcgtgaaga
      241 aaccccttcg gaagacccga agcaacggtc ttcctgcaga gagaagaaaa tggctcatga
      301 ccagcctctg ctggttgtgc aggaggccct gaggaagtgc ttccctgtgg tggaggaaca
      361 gcagaacctg tggcagagca ccctgcagga ctgctcgccc ctcctgtcct ctctcagtaa
      421 cctggctgag cagctgcaag ccgcacagag tctgcgcttt gaggatgtgc cagccctgcg
      481 tccctttcca gacttacagg agcggttgag gcgcaagcag ctggaggctg gtgacgttgt
      541 tctggacaag ctagctgagc ggctagccac cctcctcaag gtccgtaaca ccatcaacag
      601 ccacgtggag caggtgtttc aggcctacga gcagcatgcg gctgtgctag acattgacac
      661 cgtcctgcgc ccctcagttg tgagcccctc tgtggctgac atgttggagt ggctgcagga
      721 catcgacaga cattatggaa gctcgtacct gaagagaaag tacctcctct cctccatcca
      781 ctggggagac ttggccagca tccaagcact gcccaaggcc tgggaccaga tttcagaaaa
      841 tgagtgccaa actcttgtgt cagatgtcct ggtgagtgtc tccttcttcc tggaggagcc
      901 aggaggctgt gcagcgtctg gagatctgga gcaccacagc tgagggctgc cattgctaca
      961 ctaggctatt tctaagtgag ggtcagcatt gctacctgac tcactggaat agcagtgcct
     1021 aggacttctc cgtgctaggc catggccaag ggtccatgac agctgcacct atgactctga
     1081 gaagcagata gaggctgagg agacaggaaa ggcagtgctg ataaacagtg tccaccaagg
     1141 caggaaaggg cagaatgcaa ggttgtgtgg ccaccgctgc ctatgtcatc tgaaccatag
     1201 tctctggttg gctcaggtcc tgattctgtg tgtgtcagta tctgagtcct taatggctta
     1261 aagataggag tgggtctggg agtccagggc gggagcagtg tgtgtgtctg gggggagggg
     1321 gaaagttggg ggacaaagtc aatcacctgc aaaaccccaa aaaggaaagg actgaagaaa
     1381 agggaacttt taaaatgttt actccttcac cgaagctcat tatgaagcca gtttccattt
     1441 ccaaagtcag ccaccagggg gcgatggtgc agcgtgagcg gttctgaatg ccttgttctt
     1501 gagggaggtc ccctgttgct gttaaaagcc actgaggtgt ctgtggggag ctgggtatcc
     1561 cacccaggac tagggaggca aagacaggtg ggtctttgtg attttgagat caccttggtc
     1621 tctatagctc caggtcaacc aaggccacat actgagactg tctcaaaaag gaagacaaaa
     1681 aggtaaaggg accttgcatt ggccacggtc ttctgagttt ggggtaaccg gccaggggag
     1741 ggaatgccgg ctgtgatggt tggtttttat ggtccacttg acaaagccac ctcggaaggg
     1801 agtctcagtg aggaatgttc tagatttggt tggcttgcag acatgcaaga ttttcttaac
     1861 tgaggtgaga agacccatcc tgaatgtgag tggcagcatt tcatgggctg gagccaggat
     1921 caaaggagaa agagcaggct aagcacttag caggcattca cctttgatgg tgagtatgct
     1981 gtgaccagca gctgcttcag gttcctgcca ctgactctcc tgtagtaatg gattctaact
     2041 tcaaattata agcccaatat ctgccaatag gtgttatcat gttttagggt tctctaaagg
     2101 aacaggacta gtgataacat gaatgaatat aaagagagag tactgagggc agcaagagtg
     2161 agggccggcg tacctaaagc aaaagctttc ttcttccata tgatgatatg tggactccca
     2221 ccacagggtg tggcccagat atggggtggg tcctaccccc gaatgatcca gatttagagt
     2281 gggtcttccc acctcaaatg atccaatcaa gaaagccctc acaggcctgc ctagttgctt
     2341 gagtcttagt tgattccaga tgtcaagttg acagcaaaga ttagctatca catgcagtgc
     2401 cgggaaagag actgagaggc agcctggagt ggtgccgacc cttgccttct gtgccacagc
     2461 cactgctcgg gggtctcagc ttcccatgtg ctctacgagt cagggctgcc gtgtacaggg
     2521 cgtagtgcag agaatgggtt tattttagct tttgatttta caagattggg tttctctgtg
     2581 tagccctggc tgtcctggaa ctcactctaa accaggctga tctcaaagat ccacctgcct
     2641 ctgcctcctg agtactagga tcaaaggcat gcgccaccac cacccaccca gctaaggatg
     2701 gagactttta aaaagaaagt ggctttgttt tcttactata ttttttgttt tcaattaaag
     2761 aaaaaattta aatacagaaa agtataatgt aaaacccacc ctaatatttt gatctgtatc
     2821 cctttactgt tcttcacaaa tttcaaaaca aagacattga cacaaactca ttgtttctaa
     2881 atttgtggat agttggacat ctgtaaataa gtcaataaaa ctgtactata taggctatat
     2941 ga
//
