LOCUS       XM_006523762            7673 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus afadin, adherens junction formation factor
            (Afdn), transcript variant X15, mRNA.
ACCESSION   XM_006523762
VERSION     XM_006523762.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523762.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7673
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..7673
                     /gene="Afdn"
                     /gene_synonym="5033403D15Rik; Af-6; AF6; Afadin; Gm314;
                     I-afadin; Mllt4; S-afadin"
                     /note="afadin, adherens junction formation factor; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 65 ESTs, 1147 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:17356"
                     /db_xref="MGI:MGI:1314653"
     CDS             202..5883
                     /gene="Afdn"
                     /gene_synonym="5033403D15Rik; Af-6; AF6; Afadin; Gm314;
                     I-afadin; Mllt4; S-afadin"
                     /codon_start=1
                     /product="afadin isoform X15"
                     /protein_id="XP_006523825.1"
                     /db_xref="GeneID:17356"
                     /db_xref="MGI:MGI:1314653"
                     /translation="MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMR
                     FYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGER
                     RLDIDEKPLVVQLNWNKDDREGRFVLKNENDAIPAKAQSNGPEKQEKEGVIQNFKRTL
                     SKKEKKEKKKKEKEALRQASDKEERPSQGDDSENSRLAAEVYKDMPETSFTRTISNPE
                     VVMKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFA
                     VAESLEKYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSD
                     KGILVFQLKRRPPDYIPKKMKKHVEGKSLKGKDRADGSGYGSALPPEKLPYLVELSPD
                     GSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSM
                     DAETYVDGQRISETTMLQSGMRLQFGTSHVFKFVDPIQDHVLSKRSVDGGLMVKGPRH
                     KPGAVQETTFELGGDVHSGTALPASRSTTRLDSDRVSSASSTAERGMVKPMIRLDQEQ
                     EYRRRENRTQDATGPELILPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYM
                     ACRYVLSSQHRPDISPTERTHKAIAVVNKMVSMMEGVIQKQKNIAGALAFWMANASEL
                     LNFIKQDRDLSRITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENSLQR
                     PKIDDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHY
                     WGAIIRQQLGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYVPDDIPNINSTCFK
                     LNSLQLQALLQNYHCAPDEPFIPTDLIENVVAVAENTADELARSDGRDVQLEEDPDLQ
                     LPFLLPEDGYSCDVVRNIPNGLQEFLDPLCQRGFCRLVPHTRSPGTWTIYFEGADYES
                     HLMRENAELAQPLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAA
                     DVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIYHGLATLLN
                     QPSPMMQRISDRRGSGKPRPKSEGFELYNNSAQNGSPESPQMPWTEYSEPKKLPGDDR
                     LMKNRADHRSSPNVANQPPSPGGKGPYTSGTAAKITSVSTGNLCTEEQSPPPRPEAYP
                     IPTQTYTREYFTFPASKSQDRMAPPQSQWPNYEEKPHVHTESNHSSIAIQRVTRSQEE
                     LREEKVYQLERHRVEAGMDRKCDSDMWINQSSSVESSTSSQEHLNHSSKSVTPASTLT
                     KSGPGRWKTPAAVLPTPVAVSQPIRTDLPPPPPPPPVHYTSEFDGIPMDLPLPPPPAN
                     QAGPQSAQVAAAEWKKREEHQRWYEKEKARLEEERERKRREQERKLGQMRSQTLNPAS
                     FSPLATQAKPEKPSTLQRPQETVIRELQPQQQPRTIERKDLQYITISKEELSSGDSLS
                     PDPWKRDAREKLEKQQQMHIVDMLSKEIHELQNKVDRTAEESDRLRKLMLEWQFQKRL
                     QESKQKDEDDDEEEDDDVDTMLIMQRLEAERRARQTAMPAISVLDLMQDEERRRQQQL
                     EEMRKREAEDRVRQEEDGRHQEEERVKRDAEEKRRQEEGYYSRLEAERRRQHEEAARR
                     LLEPEEPGLSRPPLPRDYEPPSLSSAPCAPPPPPQRNASYLKTQVLSPDSLFTAKFVA
                     YDEEEEDYGPAGQDKYPSTRKSHGHLPLATLKPQQPPCQPRPASDGISLCNSFQPPLA
                     KANSTAYKAGQPPPLPGKPSLYRPGHWKGRGPNSYSGSAGTAVGAYDAPREAREKLTR
                     SQDADLPGSSGAPENLTFKERQRLFSQGQDVSDKVKASRKLTELENELNTK"
ORIGIN      
        1 gacgcgcacg gcgggcgggc gcgcacggcg gcgggagggc ggggggcggc gctcggcgca
       61 ccggccgcgg ctgaggcggg ctgaagcggc gcgggccgga cgcgggccga gcccggcgga
      121 ggacgcgcgg cggcggcggc ggcggtgagg cggcctgcgg tgttccggcc cggctggccc
      181 tggggaggag cggccgcgat catgtcggcg ggcggccgcg acgaagagcg gcggaagctg
      241 gccgacatca ttcaccactg gaacgccaac cggctggacc tgttcgagat cagccagccg
      301 accgaggatt tggagtttca tggagtcatg agattttatt ttcaagataa agctgctgga
      361 aactttgcaa caaaatgtat tcgagtctct agcacagcca ccactcaaga tgtgattgaa
      421 acactggcag agaagttccg ccctgacatg cgcatgctct cctctcccaa gtactccctc
      481 tatgaagtgc atgtcagtgg agaaagaaga ttggacattg atgagaaacc tctagttgta
      541 cagttgaatt ggaacaaaga tgatcgagag ggtcgattcg tccttaagaa cgagaatgac
      601 gccattcctg ccaaggctca gagtaatgga cctgaaaagc aggagaaaga aggtgttatt
      661 cagaacttca aaagaactct ctcaaagaaa gaaaagaagg aaaaaaagaa gaaagagaag
      721 gaggcattga gacaagcctc tgataaggaa gaaaggcctt ctcaagggga tgacagtgag
      781 aactcacgac tggctgctga agtttacaaa gacatgcctg agaccagctt tactaggacc
      841 atttctaacc ctgaagttgt catgaaacgg cggcggcagc aaaaactgga gaagagaatg
      901 caagagtttc ggagctcaga tgggcggcct gactcaggtg gaacactgag gatatatgca
      961 gatagtttaa aaccaaatat tccatacaag acaatcctgc tgtctactac cgataccgca
     1021 gactttgctg tagccgaatc tttggagaag tatggtctgg aaaaagagaa tcccaaggac
     1081 tactgtattg cccgggttat gcttcctcct ggagcccagc attctgatga gagaggtgct
     1141 aaggaaataa ttcttgacga tgatgaatgt cctttacaaa tcttcaggga atggccaagt
     1201 gacaaaggga ttttagtctt tcagttgaag aggagaccac cggactacat cccaaagaaa
     1261 atgaagaaac atgttgaagg gaagtcgttg aaggggaaag acagagctga cgggtctggc
     1321 tacggctccg ctcttcctcc cgagaagctg ccctacttag tagagctaag cccagatggc
     1381 tctgactcca gagacaagcc aaagttatac cgccttcaat taagtgtgac tgaagttggg
     1441 acagagaaat ttgatgacaa ttctatccag ctgtttggcc ccggaattca gccccatcac
     1501 tgtgatctca ccaacatgga tggagtggtc actgtgacac ccagaagtat ggatgcagag
     1561 acctacgtgg atggtcagcg catctcagag accacaatgc tgcagagtgg catgagactg
     1621 cagtttggca cctcgcatgt gtttaagttt gtggacccca tccaggacca cgttctttcc
     1681 aagagatctg tggatggagg cctgatggtc aagggcccaa gacataaacc tggagctgtt
     1741 caggagacaa cctttgaatt gggaggagat gtccacagtg ggacagcatt gccggcaagc
     1801 aggagcacta ctagactgga cagtgacagg gtgtcctctg cctctagcac agctgagcga
     1861 gggatggtga agccgatgat ccgactggac caggagcagg aatatcgacg acgagaaaac
     1921 aggactcagg atgctactgg gcctgaactg atactgcctg ccagcattga attcagggaa
     1981 agctctgaag actctttttt atctgccatt ataaactata ccaatagttc tacagttcat
     2041 tttaagttgt cacctacata tgtgttatac atggcatgcc ggtatgtatt gtccagccag
     2101 cacaggcccg acatcagtcc tacagagcgt acacataagg ccattgctgt tgtcaacaag
     2161 atggtgagca tgatggaagg ggtcatccag aaacagaaga acattgcagg agcacttgct
     2221 ttttggatgg caaatgcatc tgagcttctc aacttcatca agcaggaccg agaccttagt
     2281 cggatcacgc tggatgccca ggatgtccta gcacacttgg ttcagatggc atttaagtac
     2341 ttggttcatt gccttcagtc agaacttaat aactacatgc cagcctttct ggatgatcct
     2401 gaggagaaca gtctgcaaag accaaaaata gatgatgtgc tgcacacact cacaggagcc
     2461 atgtccttgc tgcggcgctg cagagtcaat gctgccttga ccatccagct cttctctcag
     2521 cttttccact tcatcaatat gtggctgttc aacagactgg tgactgaccc agattcaggc
     2581 ctgtgctccc actactgggg tgccattatc cgccagcagc tggggcatat tgaagcgtgg
     2641 gcagagaagc aggggctaga gctggcagct gactgtcact tgagcagaat tgtacaggct
     2701 acaacattgc ttacgatgga taagtatgta cctgatgaca ttccaaatat aaacagcaca
     2761 tgctttaagt taaattctct gcagcttcaa gccttgttac aaaattacca ctgtgcaccc
     2821 gatgagcctt ttattcctac ggatctcata gaaaatgttg tggctgttgc tgagaacaca
     2881 gctgatgagc tcgcccgcag tgatggcaga gacgtgcagc tggaggaaga cccagaccta
     2941 cagctgcctt ttcttctgcc agaagatggc tattcctgtg atgttgtcag aaacattcca
     3001 aatggtttac aagaattttt agaccctctg tgccagagag gattttgtag attggttcct
     3061 cacacacgtt caccaggtac ctggacaata tattttgaag gagcagatta tgaaagtcac
     3121 cttatgcgtg agaacgcaga actggcccag cctctgagga aggagcctga gataatcact
     3181 gtgactctga agaagcagaa tggaatgggc ctcagcatcg ttgcagccaa gggtgctggc
     3241 caggataaac tgggaatcta cgttaagtcg gttgtcaaag gaggtgctgc agatgtggat
     3301 ggacgattag ctgctggtga ccaactcctc agtgtggatg gacgaagtct ggttggactt
     3361 tctcaggaaa gggcagcaga actcatgaca agaaccagtt ccgtggttac actggaagtt
     3421 gcaaagcaag gtgccatcta tcacggcctg gccaccctcc ttaaccagcc gtcccccatg
     3481 atgcaaagaa tttcagatcg tcgtggctca ggtaaaccca gaccaaagag tgaaggtttt
     3541 gagctctata ataattcagc tcaaaatggc tccccagaga gtcctcagat gccttggaca
     3601 gagtacagtg agccaaagaa actgcctggg gatgacaggc tgatgaaaaa cagagcggac
     3661 caccgttcca gccccaatgt ggcaaatcag cctcctagcc ctggagggaa gggtccatat
     3721 acatctggaa cagcagctaa gataacatct gtctccactg gaaacctctg cactgaggag
     3781 cagtcccctc cacccagacc tgaagcctat cctatcccta ctcagacata caccagagag
     3841 tattttacct ttccagcttc aaagtcgcag gatcggatgg ctcctcctca gagccagtgg
     3901 ccaaattatg aggaaaaacc acatgtgcac acagaaagta atcattccag tattgcaatc
     3961 cagcgtgtta cccgttccca ggaagagctt cgggaagaaa aggtttacca acttgagcgg
     4021 catcgagtag aggcaggcat ggatcgcaag tgtgacagtg atatgtggat caatcagagc
     4081 tcctcagtgg aatccagcac atccagccag gaacacctga accattcttc caagtcagtt
     4141 acccctgctt ccactctgac caagagtggt cctggccgtt ggaaaacacc agcagcggtg
     4201 ctgcccaccc ctgtggctgt ctctcagccc attcgaacag acctccctcc accaccacct
     4261 ccaccgccgg tccactacac cagtgagttt gatggtattc caatggattt gcccctccca
     4321 cctcctcctg ccaaccaggc aggaccccag tctgctcagg tggctgctgc agagtggaaa
     4381 aagagagagg agcaccagag gtggtatgag aaagagaagg cccgcctgga ggaagaacga
     4441 gagagaaagc gcagggagca ggagcggaag ttggggcaga tgcgctctca gaccctgaac
     4501 cctgcttcct tctcaccttt ggccacacag gccaagccag aaaagccttc cacactgcag
     4561 aggccccaag aaacagtcat tcgggagctt cagccccagc agcagccccg cacgatcgag
     4621 cgcaaggatc tgcagtatat aaccatcagt aaagaggagc tgtcctctgg tgatagtctg
     4681 tctccagacc cctggaaacg agatgccagg gagaagctgg agaagcaaca gcaaatgcac
     4741 attgtggaca tgctaagcaa ggagatccac gagctgcaaa acaaggtgga ccgtactgcg
     4801 gaggagagtg accgcctgcg gaagcttatg ctggagtggc agttccagaa gagactacag
     4861 gagtccaaac agaaggatga ggatgatgac gaagaggaag atgatgatgt ggacaccatg
     4921 ctgatcatgc agcgtctgga ggccgagcgg agagccaggc agactgctat gccagcaatc
     4981 tctgttctag atttgatgca ggatgaggag cgcaggcgcc agcaacagtt ggaagagatg
     5041 cggaaacgag aagcagaaga tcgagtaaga caagaggaag atggacgcca tcaggaggag
     5101 gagcgagtaa agagagatgc tgaagaaaag aggcgacagg aggaagggta ttacagccgc
     5161 ctagaagctg agaggcgccg acagcacgaa gaggcagcac gcaggctgct ggagcctgaa
     5221 gagcccgggc tgagccgacc tccacttcca cgggactatg agcccccgtc cttgtcctca
     5281 gcaccctgtg cccctcctcc cccacctcag cgaaacgcat cctacctcaa aacacaggtc
     5341 ctctccccag actcgctgtt cactgccaag tttgttgcgt atgatgagga ggaggaggac
     5401 tacggcccag caggtcagga taagtacccc agcacacgga agtctcatgg gcaccttcct
     5461 cttgccaccc ttaagccgca gcagcccccc tgccagccac gcccagcctc ggatggcatc
     5521 tccctctgca actcattcca gccacccttg gccaaagcca acagtacagc ttacaaagca
     5581 ggccagcccc cgcccctgcc aggcaaacca agcctgtacc gtcctggcca ctggaaaggt
     5641 cgaggaccaa actcttactc gggatctgca ggcacagctg tgggagccta tgatgcccct
     5701 cgggaagcga gagagaaact gactaggagc caagacgcag acttacctgg cagttctgga
     5761 gcccctgaaa atctgacatt taaagagcgt cagcgccttt tttcacaagg gcaggatgtg
     5821 tctgacaaag tgaaagcttc tcgtaaatta acagagctcg agaatgaact gaacacaaag
     5881 tgagaagaga gaggtctgcc cttggcggga gctttgtggg ggcgagcctg aagaggaagg
     5941 aacagtgcta cttctaagtg atgtttattt tctgtacctg aaatggttgc aatttagaga
     6001 tgttccaatt ccaagaaact tcgttttact ttaccaagaa aaatcctgtc tagttctttg
     6061 tgatctgact cacatgaagt tacctgtttc tgttagcttt tggggagact cttggactca
     6121 tagggcagaa tgaagggctg taaagatgag ggggtatttc ttctacccta tcttctttca
     6181 ttgtcattcc aagggcagta ggccaagaaa ttatctttct ggtttttttc ctctaaactc
     6241 catttggtta gcagacagtg acagctgagc aggtctgagc actactgtgt catagtggac
     6301 cctgactgca ggagtcaggc ctctcagccc agggcagatg ctgcctttat cttctatcat
     6361 ttgtatgacg tggctggatg gagtttcttt tgtaaggtgc acaacacatt cttgacaaat
     6421 gtgagtctcc tgatcaattt aaatgtttga gattgaatat ctaattaata attcaatttt
     6481 gaaaattctc aaaaaaattt gaggatttaa gcctagggat tttattttta taaataccaa
     6541 atcatcatta gactaatcac tggtggaaat taaatatggc agttatgtta ggtttcctaa
     6601 tatttcaaag gttccaaagg atctagagct ctctagttac atagcattca tataggaatg
     6661 agcagagaca tctgagaaga gtgggagctc atgggtgaca gtaaaactta ggtgtctcag
     6721 aacttaacat ttagtaaagt gatgtagatc caatgtcagg aaaggaagga ctgtgttact
     6781 gtgcctcctc tgactcatgt gcttttcagc ataatagact tatttaatat taattcctaa
     6841 actttgcact gtcaatcctc tgctgagttg tgggaggcag acctcagttt gcttgttttt
     6901 tgtgaaagct aactttatga tttcaagcac actttctaca tgagaaaccc ctaatgtgtg
     6961 tccatatgat ctttctgtac attctattct cttacaaatc tgtgcatcag gaaaatatgc
     7021 atactttcaa atagaacaga ggtatttgca acctgaaaaa ccacttttaa taagagctgt
     7081 atgataaatt gttgaaatgc aagtgtaaat attttttatg ttaatccagt ttcctattag
     7141 aaagtgtgtc tttgctattt cctctgtaag agaatagaat ggccttgaga gtttatgaag
     7201 gatttgcaca ctcgtcttgc ctaggaagtg caatctcctt gtgactggag cacactggca
     7261 gccttcaggt gtcataatca tacatcccag agaagagcag tcacctgctg tcactagtgc
     7321 atgggaagac agatgcacag aagagccagg tagcacctga aaacgctgca cgtgtgtttg
     7381 tgaaacctgt agtgaagtag acttggccgt ccctggacag tgaggtcaga tgtgaataca
     7441 tattgtaaga gcacgttgaa tagtgtgcat tactgtgggg aaacaccgaa actgctgttg
     7501 tttttcattt ctactgtatt ttagttgcag cctattttta ataaactttg tatctattta
     7561 agtgtatttg ctattgtttt caaagtgctg acaaagttta tatttgtaat gccagcattc
     7621 ctcttcccca tttccagctg tcactccttc attaaactgc tgagtcattc ctt
//
