LOCUS       NM_172960               2052 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus aarF domain containing kinase 5 (Adck5), transcript
            variant 1, mRNA.
ACCESSION   NM_172960
VERSION     NM_172960.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 2052)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   4  (bases 1 to 2052)
  AUTHORS   Roma,G., Cobellis,G., Claudiani,P., Maione,F., Cruz,P., Tripoli,G.,
            Sardiello,M., Peluso,I. and Stupka,E.
  TITLE     A novel view of the transcriptome revealed from gene trapping in
            mouse embryonic stem cells
  JOURNAL   Genome Res 17 (7), 1051-1060 (2007)
   PUBMED   17540781
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK039217.1, BQ886383.1 and BC060528.1.
            
            On Mar 1, 2008 this sequence version replaced NM_172960.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes a functional protein.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849374,
                              SAMN00849375 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                AK039217.1         2-78
            78-860              BQ886383.1         1-783
            861-2031            AK039217.1         857-2027
            2032-2052           BC060528.1         1916-1936
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.1 cM"
     gene            1..2052
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /note="aarF domain containing kinase 5"
                     /db_xref="GeneID:268822"
                     /db_xref="MGI:MGI:2679274"
     exon            1..136
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1873
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /codon_start=1
                     /product="uncharacterized aarF domain-containing protein
                     kinase 5"
                     /protein_id="NP_766548.2"
                     /db_xref="CCDS:CCDS27576.2"
                     /db_xref="GeneID:268822"
                     /db_xref="MGI:MGI:2679274"
                     /translation="MWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPPARTSRAR
                     LLWRRALSATVVGTPFLLGAYYFMAEASERRKLRLAVDGIGRFGRSVKIGLFISTDYW
                     WCTNVVLRGVEENSPKYVEIMSACHQRAADTLVAGAIRNGGLYVKLGQGLCSFNHLLP
                     TEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAK
                     LHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMHPSFGFSWVLQDLKGTLVQEL
                     DFENEGRNAERCAQELKHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGL
                     AVQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEK
                     DRSSLCQLWRAIILRDNAAMKKHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISRE
                     EAAYMQDMAREHFDGIMEVLKALPRPMLLVLRNINTVRAINSNLGTPVDRYFLMAKSA
                     VWGWSRLVGAAYQGIYGSSLLRHIKVLWEALKFEMALRLEILAMRLTALMLRVLVRLG
                     FAPKAEAEEVYQYLEM"
     exon            137..240
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            241..390
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            391..466
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            467..667
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            668..808
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            809..922
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1054
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1138
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1220
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1299
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1391
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1392..1644
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1645..1761
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     exon            1762..2035
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2035
                     /gene="Adck5"
                     /gene_synonym="A230108P17"
                     /note="major polyA site"
ORIGIN      
        1 actctaccca ggtctgtgtg gcgcgtgtgg gccggtgcgc aagcgcattg cctactcttt
       61 cgcggggtcg tctgggcacc agggacgtct gcggcgaaac cgggaagaga gcactgccgg
      121 ggacatgtgg cggccgatgc gactgtgtca cttccactct accctgctgc agagcaggca
      181 gaagccctgg ccgtgccctg ccatattctt caggagaaac ttcaagagcc caccagcaag
      241 gacctcaaga gccaggctgc tgtggaggcg ggcactctct gccactgtgg tggggacacc
      301 cttcctactt ggagcctact acttcatggc agaggcatcg gagaggagga agctgcgact
      361 tgcagtcgat ggtatcgggc gctttggcag gtctgtgaag attggtttgt tcatctccac
      421 ggactactgg tggtgcacaa acgttgtcct tcgaggagtg gaagagaaca gcccgaagta
      481 tgtggagatc atgtctgcct gtcaccagcg tgcggctgac accctggtgg ctggagccat
      541 ccgcaacggg ggcctctatg tgaaactggg ccaagggctg tgctccttca accacctgct
      601 gccgacagag tacatccaga cgctgcgtgt gctggaggac aaggccctca ctcggggctt
      661 ccgggaggtg gatgagttgt tccttgaaga cttccaggca ctccctaatg aactcttcca
      721 ggagtttgac tatgagccga tggctgctgc aagcctggct caggtgcacc gtgccaagct
      781 acacgatggc actgatgtag ctgtaaaggt acagtacatt gacctacgag accgctttga
      841 cggagacgtg cagaccttgg agctcctgct gcggctcgtg gagctcatgc accccagctt
      901 cggcttcagc tgggtcctac aggacctgaa ggggaccctg gtccaggagc tggacttcga
      961 gaatgagggc cgaaatgctg agcgctgtgc tcaggagcta aagcacttcc actatgttgt
     1021 tatccctcgg gtgcactggg acaggtccag caagcgggtg ctgacagctg acttctgtaa
     1081 tggctgtaag gtgaatgaca tggagggcat caagagtcag gggctggcag tgcaggatgt
     1141 agcaaagaag ctgatccaga cctttgctga acagatcttc cacactggct tcattcactc
     1201 tgacccccac cctggcaatg ttctggtgcg gaaaggtcca gatggaaagg cagagctggt
     1261 gctcctggac cacgggctct accagttcct ggacgagaag gaccgatcct ccctctgcca
     1321 gctgtggcgg gccatcatcc tgagggacaa tgctgcaatg aagaaacatg cagctgcact
     1381 tggggtccaa gactacatgc tcttctctga ggtgctcatg cagcgaccag tacgcctggg
     1441 ccaactgtgg ggttcccacc tgatcagccg ggaggaggcg gcctacatgc aggacatggc
     1501 ccgtgaacac tttgatggca taatggaagt gctcaaggca ttgccacggc ctatgctgct
     1561 agtgctgcga aacatcaaca cagtgcgcgc catcaactcg aacctgggca cccctgtcga
     1621 ccgctacttc ctcatggcca agagtgctgt ctggggttgg agccgcctgg tgggtgcagc
     1681 gtaccaaggc atttacggca gcagcctcct gcgccacatc aaggtcctct gggaggcatt
     1741 aaagtttgag atggccctga ggctggaaat cctagccatg cggctcaccg ccctcatgct
     1801 gcgtgttctg gtccgcctgg gctttgcccc caaggctgag gccgaggagg tctatcagta
     1861 cctggagatg tagttccctg agccagaatg actgcaaggc tgccggggcg agcagagttt
     1921 ccatcctgca tggccacact gcacaggctc cagtgtagat acctacaacc tggggcctgc
     1981 aatgggggat acactacggg gttcttaaac acaatgacca cacactcgtc tgaaaaaaaa
     2041 aaaaaaaaaa aa
//
