LOCUS       NM_001369835            1468 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus actin, epsilon 1 (Acte1), transcript variant 2, mRNA.
ACCESSION   NM_001369835 XM_006508667
VERSION     NM_001369835.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V,
            Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs
            P, Fu J, Nefedov M, de Jong PJ, Stewart AF and Bradley A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC133502.4.
            
            On Apr 22, 2019 this sequence version replaced XM_006508667.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.156103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                AC133502.4         80758-80790         c
            34-181              AC133502.4         80344-80491         c
            182-322             AC133502.4         78384-78524         c
            323-451             AC133502.4         75818-75946         c
            452-562             AC133502.4         66403-66513         c
            563-647             AC133502.4         63671-63755         c
            648-809             AC133502.4         55858-56019         c
            810-998             AC133502.4         53471-53659         c
            999-1180            AC133502.4         51192-51373         c
            1181-1468           AC133502.4         50167-50454         c
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 88.33 cM"
     gene            1..1468
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /note="actin, epsilon 1"
                     /db_xref="GeneID:102636989"
                     /db_xref="MGI:MGI:2685344"
     exon            1..33
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            34..181
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            182..322
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..1324
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /note="isoform 2 is encoded by transcript variant 2;
                     actin-like"
                     /codon_start=1
                     /product="actin, epsilon 1 isoform 2"
                     /protein_id="NP_001356764.1"
                     /db_xref="CCDS:CCDS90361.1"
                     /db_xref="GeneID:102636989"
                     /db_xref="MGI:MGI:2685344"
                     /translation="MEKTPLVCDYGSGFSKVGFSGTQAPQAVFPTILGKMKHTNVLEG
                     LGEQDWFIGAETQTNRTELNMYYPISRGAITNWDNVEKIWHYSFYHSLQIAPEQHPIL
                     ITEAPLTSKEAKSRMTQILFETFNFPALYTANQAVLSLIASGRTSGTAIESGDGMTYF
                     VPVMNGYPLHLSTTKLDIAGQDLTLYLMKLLSDNGNVLETIADLEYIRDLKDKYSYVA
                     LDYNMEMSKTSAPSFQKKFTLPDGKEINLGQEAFMCSEVLFDTSLLERANPGIHMLTL
                     ESIMSCEKSHQRTLFNYIVLTGGTSACTGLRFRMQKEMAKVVSPDFCVKVTASPYAKY
                     SAWIGASILSSLPLFKDMWITNHEYLEIGPSVIFRRCF"
     exon            323..451
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            452..562
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            563..647
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            648..809
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            810..998
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1180
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1468
                     /gene="Acte1"
                     /gene_synonym="Gm498"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaggaggac tgtggcctcc ctcagagaca ccatgaggaa acagacatgt tcaagctaga
       61 tcaactgatc ctgaataaac acacttggga ttggccacag atgccacact gtcaccaggg
      121 agcacgctaa ccttgagaga ctggagcctc ccaccctgct gtttccagaa ccccaagcca
      181 ggcgtgtcca ggtcaccaca gcacaatgga aaaaaccccc ctcgtctgtg actatggttc
      241 tggcttcagt aaggtgggct tttcaggaac tcaggccccc caggctgtct tccccaccat
      301 cctcgggaaa atgaaacata ccaatgtgct agaggggttg ggagaacaag actggttcat
      361 tggagctgag acccagacta atcgaacaga actgaatatg tactacccca tctcccgagg
      421 agccatcacc aactgggaca atgtagagaa gatttggcat tactccttct accactccct
      481 ccaaattgcc cctgaacagc accctatcct gataacagag gcaccattaa cgagcaagga
      541 agctaaatcc agaatgactc agatcctatt cgaaaccttc aacttccccg ccctgtacac
      601 agctaatcaa gccgtcctct cccttatcgc ttctggcaga acctctggaa cagctattga
      661 atctggagat gggatgacct acttcgtgcc tgtcatgaat ggctatcctt tgcacttgtc
      721 aaccaccaag ctggacatag ctggccaaga cctgactcta tacctcatga aactgttgtc
      781 agacaatggg aatgtgttag agaccatagc tgacctcgag tacatccgag acctgaaaga
      841 caaatacagc tatgtggcac tggactacaa catggagatg tcaaaaactt cagcaccatc
      901 cttccagaag aaattcacac tgccagatgg caaggaaatc aacctagggc aagaggcttt
      961 catgtgctca gaggtgctct tcgacaccag cctcctggag agagccaacc cagggatcca
     1021 catgctcacc ctggagagca tcatgtcctg tgagaaatcc caccagagga ctctattcaa
     1081 ttatatcgta ctgactggtg gcaccagtgc ctgtactggc ctacgattcc ggatgcagaa
     1141 agagatggca aaggtggtct ctccagactt ctgtgtgaag gtaactgcct ctccatatgc
     1201 caagtatagt gcctggatag gtgcctccat cttgtcttcc ctccctctgt tcaaggacat
     1261 gtggatcaca aaccatgagt atttggaaat tggcccttct gtcatattta gaagatgctt
     1321 ctgactggtg gattttgggt tccatcacct gagccaacat catcatgcct aggctgggcc
     1381 ttagccatac tgagcagggc ataatcaaaa caagctcaga gcaaggcctc ctttctcctg
     1441 aaggacagta aaagtgtgta acaagggc
//
