LOCUS       NM_028709               5808 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus ankyrin repeat and BTB domain containing 3 (Abtb3),
            transcript variant 1, mRNA.
ACCESSION   NM_028709
VERSION     NM_028709.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5808)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5808)
  AUTHORS   Bygrave,A.M., Sengupta,A., Jackert,E.P., Ahmed,M., Adenuga,B.,
            Nelson,E., Goldschmidt,H.L., Johnson,R.C., Zhong,H., Yeh,F.L.,
            Sheng,M. and Huganir,R.L.
  TITLE     Btbd11 supports cell-type-specific synaptic function
  JOURNAL   Cell Rep 42 (6), 112591 (2023)
   PUBMED   37261953
  REMARK    GeneRIF: Btbd11 supports cell-type-specific synaptic function.
REFERENCE   3  (bases 1 to 5808)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5808)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5808)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   6  (bases 1 to 5808)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   7  (bases 1 to 5808)
  AUTHORS   Ryder,E., Gleeson,D., Sethi,D., Vyas,S., Miklejewska,E., Dalvi,P.,
            Habib,B., Cook,R., Hardy,M., Jhaveri,K., Bottomley,J.,
            Wardle-Jones,H., Bussell,J.N., Houghton,R., Salisbury,J.,
            Skarnes,W.C. and Ramirez-Solis,R.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Molecular characterization of mutant mouse strains generated from
            the EUCOMM/KOMP-CSD ES cell resource
  JOURNAL   Mamm Genome 24 (7-8), 286-294 (2013)
   PUBMED   23912999
REFERENCE   8  (bases 1 to 5808)
  AUTHORS   Redshaw,N., Camps,C., Sharma,V., Motallebipour,M., Guzman-Ayala,M.,
            Oikonomopoulos,S., Thymiakou,E., Ragoussis,J. and Episkopou,V.
  TITLE     TGF-beta/Smad2/3 signaling directly regulates several miRNAs in
            mouse ES cells and early embryos
  JOURNAL   PLoS One 8 (1), e55186 (2013)
   PUBMED   23390484
REFERENCE   9  (bases 1 to 5808)
  AUTHORS   Ha,T.J., Swanson,D.J., Kirova,R., Yeung,J., Choi,K., Tong,Y.,
            Chesler,E.J. and Goldowitz,D.
  TITLE     Genome-wide microarray comparison reveals downstream genes of Pax6
            in the developing mouse cerebellum
  JOURNAL   Eur J Neurosci 36 (7), 2888-2898 (2012)
   PUBMED   22817342
REFERENCE   10 (bases 1 to 5808)
  AUTHORS   Taher,L., Collette,N.M., Murugesh,D., Maxwell,E., Ovcharenko,I. and
            Loots,G.G.
  TITLE     Global gene expression analysis of murine limb development
  JOURNAL   PLoS One 6 (12), e28358 (2011)
   PUBMED   22174793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC096535.1, BC141145.1 and BC072592.1.
            
            On Sep 20, 2008 this sequence version replaced NM_028709.1.
            
            Transcript Variant: This variant represents the longer transcript
            and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096535.1, BC141145.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1336              BC096535.1         1-1336
            1337-1510           BC141145.1         409-582
            1511-5786           BC096535.1         1511-5786
            5787-5808           BC072592.1         4413-4434
FEATURES             Location/Qualifiers
     source          1..5808
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 41.65 cM"
     gene            1..5808
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /note="ankyrin repeat and BTB domain containing 3"
                     /db_xref="GeneID:74007"
                     /db_xref="MGI:MGI:1921257"
     exon            1..1665
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            1666..1815
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            1816..2020
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2021..2173
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2174..2339
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2340..2429
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2430..2531
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2532..2625
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2626..2761
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2762..2982
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            2983..3161
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3162..3267
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3268..3370
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3371..3452
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3453..3521
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3522..3635
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     exon            3636..5788
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5766..5771
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /note="hexamer: ATTAAA"
     polyA_site      5788
                     /gene="Abtb3"
                     /gene_synonym="6330404E16Rik; Btbd11"
                     /note="major polyA site"
ORIGIN      
        1 ggctcagcag ggttttgcag ccgcctggct acagcgcttt agtgcggggc gggagctcaa
       61 gagaaccgcg gcccggatcc cggagccggg ggagcccgta gcccgccgag ctgcggcggc
      121 cgtatctggg gcgatctagg tcctatcgac actgtggccg gctctcggag gcttctgcat
      181 ccgtctggtc ccagggagga gaggaccaga cacttttatt ttggatgaaa ggcgcgggtc
      241 ctggcgggag cttccttccc ggcctggctc gcggctcagt gcgccctcgc tctggccccg
      301 actccagaag atgacttcag gttccgccgt gtatcttccc gtggtgacgg ctcggggaga
      361 caggcgaaag tagtgacact tgctggcaac gccaggtggg aaagtgagcc taggcgacgt
      421 ggagccccgc tgtccccgag gaccccggtg cccacagatc cttgcctttc cttcccctcg
      481 gctccacggc ggctgcagca tgaagtggcg cagcgatggc caggagaggt aagaagcctg
      541 tggtgcgaac gctggaagat ctgacgctgg actcgggtta tggtggcgcg gcggactctg
      601 tgcgctcctc caacttgtct ctgtgctgtt ctgactctca cccggcgtcc ccgtatggcg
      661 ggagctgctg gccgccttta gctgactcca tgcacagccg gcacaacagc tttgacaccg
      721 tcaacactgc cctggtggaa gactccgagg ggctggactg cgccggtcag cactgctcgc
      781 ggttgctgcc ggacctcgac gaggtcccct ggaccctcca ggaactggag ttgctgctgc
      841 tgcgctcgcg ggatccccgg gcaggcccag cggtccccgg cagcctgccc aaggacgcgc
      901 tggccaagct ctcgatgctg gtaagccggg ctctagtgcg catcgctaaa gaggcgcagc
      961 gcctgagcct gcgcttcgcc aagtgcacca agtacgagat ccagagtgcc atggagatcg
     1021 tactgtcctg gggcctggcg gctcactgca ccgctgccgc gctggccgcg ctgtccctct
     1081 ataacatgag cagcgctggc ggcgaccgct tgggccgtgg caagtcggcg cgctgcggcc
     1141 tcaccttctc cgtgggccgc gtgtaccgct ggatggtgga cagccgcgtg gcgctgcgca
     1201 tccacgagca tgccgccatc tacctgaccg cctgtatgga gagtctcttc cgggacatct
     1261 actcgcgggt gttggcctcc gggctacctc gtagctgtag cggtcctggc cctggctcca
     1321 gctccggttc tggcccaggc cccggctcag gccccggagc ccctgcagcg gataaggagc
     1381 gcgagactcc gggaggggga gcggcgagcg gtggcccttg cagcgcagcc agcagcgcca
     1441 gcgggggcag tagttgttgc gccccgccag ccacggcggc gaccgcagtc ccgccaacca
     1501 cagccaccgc cgccgtcgcc gccaaccatc atcaccacca ccacacgctt cacgaagcgc
     1561 ccaaattcac cgtggagacc ctggagcaca cggtcaacaa cgactcggaa atctgggggc
     1621 tcttgcagcc ctaccagcac ctcatctgtg ggaagaacgc cagtggtgtg ctgagcctgc
     1681 cagagagcct gaacctgcac cgagacccac agcggcccag caagccggga gagctcccca
     1741 tgttcagcca gtcagagctg aggaccatcg agcagtccct gctggccaca cgggtgggca
     1801 gcatcgccga gctcagtgac cttgtgtccc gggcgatgca ccatctacag cccctcaatg
     1861 cgaagcacca cggtaatggc acgcccatgc accacaagca gggggcgctc tactgggagc
     1921 cagaggccct gtacacgctc tgctacttca tgcactgccc gcagatggag tgggagaatc
     1981 ccaacgtgga accttccaag gtcaacctcc aggtggaaag gcccttcctc gtgctgcccc
     2041 ctctcatgga gtggatccga gtggccgtgg cgcatgccgg ccaccgccgc agcttttcta
     2101 tggatagcga cgatgtccgc caagccgccc ggctgctgct tccgggagtg gactgcgagc
     2161 cgcgccagct caaggcggac gactgctttt gtgcttctcg gaagctggac gccgtggcca
     2221 tcgaagccaa gttcaagcag gacttgggct tccggatgct gaattgtgga cggaccgacc
     2281 tggtgaagca ggcagtgtct ttgctggggc cggatggaat caacaccatg agcgaacagg
     2341 gtatgacccc cttgatgtac gcctgcgtcc gtggggacga ggcaatggtg cagatgctgc
     2401 tggatgccgg agctgacctg aatgtggagg ttgtcagtac tcctcataaa tatccatccg
     2461 tccaccccga gacccgccat tggacggctc tgacttttgc tgtgttgcat ggacatattc
     2521 ctgtagttca gctcctcctg gatgctgggg ccaaggtgga aggctctgtg gagcatggcg
     2581 aggagaacta ttcagaaact cccctccagc ttgcagccgc tgttggaaat tttgagctgg
     2641 ttagtttgct gttggagcgt ggtgcggatc ccctgatagg aaccatgtac aggaatggaa
     2701 tttctacaac cccccagggt gatatgaact ctttcagcca ggccgcagcc catggacaca
     2761 ggaatgtgtt ccgcaaactg ctcgctcagc cagagaagga gaagagcgat atcctgtccc
     2821 tggaggagat tctggctgag gggactgacc tggcagaaac agccccgccc cccttgtgtg
     2881 ccagccgcaa cagcaaggcc aaactgaggg ccctgaggga ggccatgtat cacagcgctg
     2941 agcacggcta cgtggatgtc acaattgata tcaggagtat aggtgtccca tggactctac
     3001 acacatggct ggagtcactt cggattgcct tccagcaaca ccgcagacct ctcatccagt
     3061 gtttgctcaa ggagttcaag accattcaag aggaggagta cacagaggag ctagtcaccc
     3121 aaggcctgcc cctgatgttt gagatcttaa aagcaagcaa gaatgaagtg atcagccagc
     3181 agctgtgcgt catcttcaca cactgttacg gtccctaccc catccccaag ctcacggaga
     3241 tcaagaggaa gcagacctca cgcctggacc ctcattttct taacaataaa gagatgtccg
     3301 acgtgacctt tctggtagag ggaagaccct tctacgctca caaagtgctc ttgttcacag
     3361 cctctcccag gttcaaggcc ctcctctcca gcaagccaac aaatgacaac acctgcatag
     3421 agattggcta cgtgaagtat cccatcttcc agctcgtcat gcagtatctc tactacggtg
     3481 gcccagagtc acttctcatt aaaaacaatg agatcatgga gcttctgtct gctgctaaat
     3541 ttttccagct ggaggctctg cagcgacact gtgagattat ctgtgcaaaa agcatcaata
     3601 ctgacaactg tgtggatatc tacagccacg ccaagttcct tggggtgaca gagctctcgg
     3661 cgtactgtga aggctacttt cttaaaaata tgatggtcct tattgaaaac gaagcgttca
     3721 agcagctcct gtacgacaaa aatggcgaag gggcgggcca ggatgtgctt caggacctac
     3781 agaggacgtt ggccattagg attcagtcta tccacctgtc gtcttccaag ggttccgtgg
     3841 tatgagacgc cccacgaggc aatggtcccc aggagcaagg tttctggctc ccttctgcat
     3901 tggcaccaca aaaacacaaa aattgttcct ggtgtctgtc tgtctgtact gggccaagga
     3961 gctgcctcca ctgcctcagc tactctccgg tcagtgaact tggcttccgt gtgctcctga
     4021 gcgaagaacc gtccacgcgt ctgcaggtta gattgtagca gaggccagaa cctgcaggcc
     4081 aactcacagc aaccaagccc cctccagtgc cccggagcca tgggcacctg ctgccaagga
     4141 ccatgatcta gcagacggac caaggcttag agatctctgc ttcctggttg actgatgaaa
     4201 acctcagtag tatgaccttg aaaagcatca catcacccac gaatgacctt ggaggctgta
     4261 cttgcccagg catcagccct ggtggctagt tgttgatgcc attgcccggc atgaggaagt
     4321 cacatggcca atttttaggg gtgggaactt tttaaaaaaa atgttcatgt ctagcaaaca
     4381 cagagcagtc tcgtagtttc gaatatattt ctaaaagctt aacagttcat tttcgactga
     4441 attgtgttta gggaatctgt gtttggggtt cttttcattt ttttttaaga tagtgagttg
     4501 caggtccgtg ccgtgtaaac ttgcatctga caaattcctg ctgatactat acaaggtcac
     4561 atattcctgc cttagtgatt cgatcatggt tccacaaaag aggtgcactg ccaattatct
     4621 ctaattatct cgaatctaat agttgacaat aacctgcatg ctgattgtgg tttgggggtg
     4681 agactagggc acccccacat aacaaaacat gcatttgcat ggaccaaacc tgtacaacat
     4741 catgtttgtg ctttgttttc ttttgccaaa gtgagatatg ttctctcgct tctcgctaaa
     4801 agcccacttg gtgaaacaaa catatctgtt tcttttcctg atcacgaatg gctctgggga
     4861 tacttttgca gaaacgtgtt catttctgat aactgagtgg gggtggggga gcacgtcaga
     4921 gaatctacta ttaatctcag agctttatct gtattctcag aagatgttca tagtttgtta
     4981 ctagccagag agtatgacta tgttagatta tttttaaaga tgaaaagtgt aagataggct
     5041 tgacactctc tggattctga gagtgtgcag tctgcaatta tctatgatga aagtttatat
     5101 tgacagggtt gtgtttactc tgccatataa tatatataca tagatgtata tatatatgca
     5161 aaagagattg gtaaagtgcc acaatactcc aaataattct tgagttgcgg cccttttttt
     5221 ctttccttgt tctttatttt taatcctaga tacattaagg taaaagctag gagaatggct
     5281 tttgtctttt gggatggcca agttttgttg ataaccccat ttcctagcat gatttttggg
     5341 aagttacgcc aaaccctaga gtctacagga acttgtatcc ttcgcctgtt gtcctactcc
     5401 ctcaacacct gtcaaggacc cacgtcaagt ctcgtttcat gggtgtggtg tgcaaggtac
     5461 ccagtctgag tctatctgca gcatcaactc ctttgtgatg caggcccccg aggcctctct
     5521 cttccatgta gtcatccatg agcctaccca gccctaccat caaatgatta tgggagcaac
     5581 tgcttgaggt gacaaccaag tcacagacac aagagtgaca cactgtcgct tgccttcagg
     5641 gatgctgctc tctaacccag ctggttctct gtggatgtcg aacactctct ggacctccag
     5701 gtgttgatct gtacattggt aactcccacc tagacctctg ttcagtttgg tgtgctttct
     5761 ctgccattaa aagaaattat ttcccacaaa aaaaaaaaaa aaaaaaaa
//
