LOCUS       NM_028440                826 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Mus musculus ABRA C-terminal like (Abracl), transcript variant 1,
            mRNA.
ACCESSION   NM_028440 XM_001473245 XM_912949
VERSION     NM_028440.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Troumpoukis,D., Vasileiou,A.R., Siskos,N., Stylianopoulou,E.,
            Ypsilantis,P., Skavdis,G. and Grigoriou,M.E.
  TITLE     Characterization of the Abracl-Expressing Cell Populations in the
            Embryonic Mammalian Telencephalon
  JOURNAL   Biomolecules 13 (9), 1337 (2023)
   PUBMED   37759737
  REMARK    GeneRIF: Characterization of the Abracl-Expressing Cell Populations
            in the Embryonic Mammalian Telencephalon.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 826)
  AUTHORS   Pensold,D., Symmank,J., Hahn,A., Lingner,T., Salinas-Riester,G.,
            Downie,B.R., Ludewig,F., Rotzsch,A., Haag,N., Andreas,N.,
            Schubert,K., Hubner,C.A., Pieler,T. and Zimmer,G.
  TITLE     The DNA Methyltransferase 1 (DNMT1) Controls the Shape and Dynamics
            of Migrating POA-Derived Interneurons Fated for the Murine Cerebral
            Cortex
  JOURNAL   Cereb Cortex 27 (12), 5696-5714 (2017)
   PUBMED   29117290
REFERENCE   4  (bases 1 to 826)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 826)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
REFERENCE   6  (bases 1 to 826)
  AUTHORS   Kagami,Y. and Furuichi,T.
  TITLE     Investigation of differentially expressed genes during the
            development of mouse cerebellum
  JOURNAL   Brain Res Gene Expr Patterns 1 (1), 39-59 (2001)
   PUBMED   15018818
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV053786.1 and BC098509.1.
            
            On or before Jul 26, 2007 this sequence version replaced
            XM_912949.2, XM_001473245.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098509.1, DV046330.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849380,
                                           SAMN01164134 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-795               DV053786.1         50-844
            796-826             BC098509.1         737-767
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 7.39 cM"
     gene            1..826
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /note="ABRA C-terminal like"
                     /db_xref="GeneID:73112"
                     /db_xref="MGI:MGI:1920362"
     exon            1..186
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            187..253
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..438
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /note="ABRA C-terminal-like protein"
                     /codon_start=1
                     /product="costars family protein ABRACL"
                     /protein_id="NP_082716.1"
                     /db_xref="CCDS:CCDS48506.1"
                     /db_xref="GeneID:73112"
                     /db_xref="MGI:MGI:1920362"
                     /translation="MNVEHEVNLLVEEIHRLGSRNADGKLSVKFGVLFQDDRCANLFE
                     ALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVLLQD"
     exon            254..810
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      784..789
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      810
                     /gene="Abracl"
                     /gene_synonym="1700028I04Rik; 3110003A17Rik"
                     /note="major polyA site"
ORIGIN      
        1 agacagcact tagtcttact tgccccctac gcctctcctt gtcccctccc tcctccactg
       61 cagcctttct cttagcccgg gccacttcct tcttctgcct gttcctcccc agggcgcgga
      121 agccgagtac agggttcaga cccacgcagc agcagctctt ccgtgaagaa ggaagcaatc
      181 ggagagtcag caatgaatgt ggaacatgaa gttaacctcc tggtggagga aattcatcgc
      241 ctgggttcca gaaatgctga tggaaaatta agtgtgaagt ttggggtcct cttccaggat
      301 gacagatgtg ccaatctctt tgaagcgttg gtaggaactc tgaaagctgc aaaacgaagg
      361 aagattgtta catacgcagg ggaactactt ttgcaaggtg ttcatgatga tgttgacatt
      421 gtattgctgc aagattaatg tggtttgcat ggcttggtgt atctgataaa ctggaataac
      481 taagttaaaa gactaacgtg aatttcctta tgtattttta tagaactttg taaacaaagg
      541 ggggcttgtt gagaagtcct gtttttatac cttgaagcaa aacattacaa tgtaaaataa
      601 acaaaaccta ttatttttct taagaaggta attgggaaat gtaggtaatg aaacattttt
      661 ggaggtgtga aaaagctttt gttctcttaa accattctta agacaatttc tacaggcact
      721 tgacattctg tcaaagcaag aagcaaactg cagaccagct gccatgaaaa atgttgttta
      781 tggaataaaa aaaatgtaac tgcctttaaa aaaaaaaaaa aaaaaa
//
