LOCUS       NM_001164491            4226 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus actin binding LIM protein family, member 3 (Ablim3),
            transcript variant 2, mRNA.
ACCESSION   NM_001164491
VERSION     NM_001164491.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4226)
  AUTHORS   Liu,C.F., Angelozzi,M., Haseeb,A. and Lefebvre,V.
  TITLE     SOX9 is dispensable for the initiation of epigenetic remodeling and
            the activation of marker genes at the onset of chondrogenesis
  JOURNAL   Development 145 (14) (2018)
   PUBMED   30021842
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4226)
  AUTHORS   Gineste,C., De Winter,J.M., Kohl,C., Witt,C.C., Giannesini,B.,
            Brohm,K., Le Fur,Y., Gretz,N., Vilmen,C., Pecchi,E., Jubeau,M.,
            Cozzone,P.J., Stienen,G.J., Granzier,H., Labeit,S.,
            Ottenheijm,C.A., Bendahan,D. and Gondin,J.
  TITLE     In vivo and in vitro investigations of heterozygous nebulin
            knock-out mice disclose a mild skeletal muscle phenotype
  JOURNAL   Neuromuscul Disord 23 (4), 357-369 (2013)
   PUBMED   23375831
REFERENCE   4  (bases 1 to 4226)
  AUTHORS   Cao,J., Shen,Y., Zhu,L., Xu,Y., Zhou,Y., Wu,Z., Li,Y., Yan,X. and
            Zhu,X.
  TITLE     miR-129-3p controls cilia assembly by regulating CP110 and actin
            dynamics
  JOURNAL   Nat Cell Biol 14 (7), 697-706 (2012)
   PUBMED   22684256
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4226)
  AUTHORS   Matsuda,M., Yamashita,J.K., Tsukita,S. and Furuse,M.
  TITLE     abLIM3 is a novel component of adherens junctions with
            actin-binding activity
  JOURNAL   Eur J Cell Biol 89 (11), 807-816 (2010)
   PUBMED   20709423
REFERENCE   6  (bases 1 to 4226)
  AUTHORS   Barrientos,T., Frank,D., Kuwahara,K., Bezprozvannaya,S.,
            Pipes,G.C., Bassel-Duby,R., Richardson,J.A., Katus,H.A., Olson,E.N.
            and Frey,N.
  TITLE     Two novel members of the ABLIM protein family, ABLIM-2 and -3,
            associate with STARS and directly bind F-actin
  JOURNAL   J Biol Chem 282 (11), 8393-8403 (2007)
   PUBMED   17194709
  REMARK    GeneRIF: ABLIM-2 and -3 associate with STARS and directly bind
            F-actin
REFERENCE   7  (bases 1 to 4226)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   8  (bases 1 to 4226)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   9  (bases 1 to 4226)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC091677.12, BC060275.1 and CF171696.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060275.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AC091677.12        92172-92200
            30-1399             BC060275.1         1-1370
            1400-1412           CF171696.1         309-321
            1413-4226           BC060275.1         1384-4197
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 34.77 cM"
     gene            1..4226
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /note="actin binding LIM protein family, member 3"
                     /db_xref="GeneID:319713"
                     /db_xref="MGI:MGI:2442582"
     exon            1..174
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            175..277
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..2313
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /note="isoform 1 is encoded by transcript variant 2;
                     actin-binding LIM protein 3; abLIM-3"
                     /codon_start=1
                     /product="actin-binding LIM protein 3 isoform 1"
                     /protein_id="NP_001157963.1"
                     /db_xref="CCDS:CCDS37839.1"
                     /db_xref="GeneID:319713"
                     /db_xref="MGI:MGI:2442582"
                     /translation="MNTSIPYQQSPYSPRGGSNVIQCYRCGDTCKGEVVRVHNNHFHI
                     RCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYH
                     PKCFVCSLCRKPFPIGDKVTFSGKECVCQTCSQSMTSSKPIKIRGPSHCAGCKEEIKH
                     GQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHSQFGIKCETCDRYIS
                     GRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRT
                     SETSISPPGSSIGSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSR
                     YTSDEMLERCGYGESLGTLSPYSQDIYENLDLRQRRASSPGYIDSPTYSRQGMSPTFS
                     RSPHYYRSGPESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHG
                     DLSTATKSKTSEDISQASKYSPAYSPDPYYASESEYWTYHGSPKVPRARRFSSGGEEE
                     DFDRSMHKLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTTGYEMSFNGS
                     PRSHYLADSDPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREYKIYPYEL
                     LLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF
                     "
     exon            278..415
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            416..599
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            600..712
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            713..839
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            840..933
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1021
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1080
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1152
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1308
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1309..1338
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1465
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1466..1564
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..1612
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1747
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1812
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1813..1960
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1961..1990
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1991..2049
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2050..2110
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2118
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2199
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2200..4216
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4190..4195
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /note="hexamer: CATAAA"
     polyA_site      4216
                     /gene="Ablim3"
                     /gene_synonym="D930036B08Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcgagcggc cgcgcccccc gcgctgccaa gctgcgagcc cacatcatgg atggcgagct
       61 ctcaggtttc gcctggctcg ccttggcatc ccagacccca gacgacccgc gggattcatg
      121 agccgcttgc aggggccggg gcaggggcct ctggctccca aaactggcca agaggtgatg
      181 agtgaggcca ggagaacaca agatttaaaa agcaaccggg gcctcctccg tattgaatga
      241 acgacccaga gcaaaggcat caccatgaac acgagcattc cttaccagca gagtccgtac
      301 agtccccggg gcggctccaa tgtcatccag tgctaccgct gcggagacac ctgcaaaggg
      361 gaggtggtcc gtgtccacaa caaccacttc cacatccgat gcttcacttg tcaagtatgt
      421 ggatgtggcc tggcccagtc gggcttcttc ttcaagaacc aggagtacat ctgcacccag
      481 gactaccaac agctttatgg cacccgctgt gatagctgcc gggacttcat cacgggtgag
      541 gtcatctctg ccctgggccg tacctaccac cctaaatgct tcgtatgcag cttgtgcagg
      601 aagcctttcc ctattggaga taaggtgacc ttcagtggga aagaatgtgt atgtcagacg
      661 tgctcccagt caatgaccag cagcaagccg atcaagatcc gtggaccaag ccactgtgct
      721 gggtgcaaag aggagattaa acatggccag tcacttctgg cactggacaa gcagtggcac
      781 gtcagctgtt tcaaatgcca gacctgtagc gtcatcctca ctggggaata cattagcaaa
      841 gacggtgttc catactgcga gtctgactac cactcccagt ttggcatcaa atgtgagact
      901 tgtgaccggt acatcagtgg cagggtcttg gaggcaggag ggaaacacta ccaccctacc
      961 tgtgccagat gtgtacgctg ccaccagatg ttcactgagg gggaggagat gtatctcaca
     1021 ggttctgagg tttggcaccc aatctgcaag caggcagcca gggcagagaa gaagctcaag
     1081 cacaggcgga catctgaaac ttccatctca ccccctggtt ccagcatcgg gtcgcctaac
     1141 cgagtcatct gtgctaaagt ggataatgag atccttaatt acaaagacct ggcagctctc
     1201 cccaaggtta agtccatcta cgaggtgcaa cgccccgacc tcatttccta cgagcctcat
     1261 tccagataca cctccgacga gatgctggag agatgcggtt atggagagtc actgggaaca
     1321 ttatctcctt actcccagga catctatgag aacctggacc tccggcagag gcgggcctcc
     1381 agccctggct acattgattc ccccacctac agtcggcaag gcatgtctcc caccttctcc
     1441 cgctcgcctc attactaccg ctcagggcct gagagtggcc ggagctcccc ataccatagc
     1501 caattagatg tgaggtcctc cacgccaacc tcttaccagg ctcccaagca ctttcacatc
     1561 ccagctggag agagtaacat ctaccgaaaa cccccgatct acaaacggca tggtgatttg
     1621 tccacagcaa ccaagagcaa aacaagtgaa gacatcagcc aggcctccaa gtatagccca
     1681 gcctactcgc cagaccccta ctatgcttca gagtctgagt attggaccta ccatgggtcc
     1741 cccaaagtgc cccgagccag aaggttctca tctggaggag aggaagagga ttttgaccga
     1801 agcatgcaca agctccagag tgggattggc cggctgatcc tgaaggaaga gatgaaggcg
     1861 cggtcaagct cctatgcgga tccttggacc cctccacgga gctccaccag cagtcgggag
     1921 gccctgcaca ccactggcta tgagatgtcc ttcaatggct cccctcgttc acactacctg
     1981 gctgacagtg atcccctcat ctccaaatct gcctcactgc ctgcctacag gagaaatggg
     2041 ctgcacagga cacccagtgc ggacctcttc cactacgaca gcatgaacgc agtcaactgg
     2101 ggcatgcgag agtacaagat ctatccttat gagctgctac tggtgaccac aagaggaagg
     2161 aaccgactgc caaaggatgt ggaccggact cgcttagagc gccacctgtc ccaggaggag
     2221 ttctaccaag tcttcggcat gaccatctcc gagttcgaga ggctagccct ctggaagagg
     2281 aacgaactga agaagcaagc ccggcttttc taggctgagg ctctatacat atagatgcat
     2341 ttatataaag atgtatgtaa atctctatcc tgacacgcag tataatcctc ttgtataatg
     2401 ggacacaaca tgctgcctgc cgtgagactt gcttttctgt actgtcaggc gagcccacat
     2461 catcgaggta tttttatgct ccttacttct cttttctatg tgctgtgggg tctgggaagg
     2521 aatctgaagg gactccatcc ttttactggg gacccttttt atactgaaac atctgtccca
     2581 ccttgagtcc ccaagaactg gctctccttt gaaaaggtgc ctggaggagc ctctactccc
     2641 tgcttcagga ccttccccca gtctccaggg ctgacgccgg ccacgaagtg ttcacacacc
     2701 gtggtcacgg atgggccctc cggtgggagg tccgtggcaa tccacccaaa tcagcgagca
     2761 cctttgaggc ctcgtaaaga attctcttca cacatccaaa taggaggagc tcagcgctcc
     2821 atgaggtgat gtggttagat gtgaggtcct caaacccatt gcttacatca gtacagagtg
     2881 gatgggctct ggcctctcct cggctcagca cccttcctcc ttccaccctt ggtcctaagc
     2941 actccctcat gcaaatctag aattcatggt aggaaacgga aaaaggcact tcccttccct
     3001 ctaccacccg caaccggctc ctctccccca cctcagtggt cccagcaccc cccaaccctt
     3061 tcccctttct aggagaggtc atcgttgcag cctgtactct tcagccttat tacaatctat
     3121 gtgcctgatg atctacacac cacagggcta atgttcccac aataagctcc agcaagcaac
     3181 cagacacact caccaccctg tgcagggaga ataggccaca ccccaaagaa aaatcttggc
     3241 ctaggccact ggtccctaga gggcaagaca ttcatatcag acccccaccc atcatcccct
     3301 ggcaatgcta tgacattagc gggtctcaca gttgaagttt ttccgaaggg tgactgttga
     3361 gaggattcca gaatgaggcc ttgaccaaca ctgctcatgt tctttcccgg tggcctcagg
     3421 gactgactct cgtgctttct gggacaaggg agaacagagc cttctcacac ccccacttca
     3481 attctgagtc attgatcagt ggtagctgtt ccctcttgga gatgcctgtg tcacagttct
     3541 tgggggggtt gtggatccca ggggaaagat ggagaagttt aaaaggacaa ttacaacact
     3601 caagaagctg gtgatgtgac gtggcgagtg tagaaatgac gtcagcaaag caaaccgttc
     3661 ctgagcacct gctgaatgct gagcactgag tgggggaggg ggaggggcac cgggatgatt
     3721 catagaaggc cctagtttcc ggggcatgcc tagtaacggg agacctggta agacgtgtgc
     3781 cagacgtaac gtaacgtaac gtaacgtaac gtaacggatg caaggcagaa cgtgacggac
     3841 ggaggcctga gaaagtgtgt gtgacgttgc tgaaggcgtg tgcagctggt gcagacccaa
     3901 ggaggcttct ggaagaggtt gcatgcgagc agaaatcaaa aaggatcaga agaatctgca
     3961 cattggaagg gtgacggggc ggagggactg caagggacgt ttaatgtact ctcatttatg
     4021 atgtcacctc cctgcaactt ctctttttgg ccaacgcctt tcaactttcc caatccatta
     4081 gaaatgtccc cccggccaga tgcgatcatt gaaactgcct cattgtcact ggttaacaac
     4141 ttgcgagatt gaagggcttt tgttattgtt gttggatatt tttatttccc ataaaagcac
     4201 atcatttcaa cccaaaaaaa aaaaaa
//
