LOCUS       NM_001081420            4299 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus actin binding transcription modulator (Abitram), mRNA.
ACCESSION   NM_001081420 XM_987540
VERSION     NM_001081420.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4299)
  AUTHORS   Rama,R., Derlig,K., Viessmann,N., Gossmann,R., Oriold,F.,
            Giessl,A., Brandstatter,J.H., Enz,R. and Dahlhaus,R.
  TITLE     Simiate and the focal adhesion kinase FAK1 cooperate in the
            regulation of dendritogenesis
  JOURNAL   Sci Rep 12 (1), 11274 (2022)
   PUBMED   35787638
  REMARK    GeneRIF: Simiate and the focal adhesion kinase FAK1 cooperate in
            the regulation of dendritogenesis.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4299)
  AUTHORS   Derlig,K., Giessl,A., Brandstatter,J.H., Enz,R. and Dahlhaus,R.
  TITLE     Special characteristics of the transcription and splicing machinery
            in photoreceptor cells of the mammalian retina
  JOURNAL   Cell Tissue Res 362 (2), 281-294 (2015)
   PUBMED   26013685
REFERENCE   4  (bases 1 to 4299)
  AUTHORS   Derlig,K., Ehrhardt,T., Giessl,A., Brandstatter,J.H., Enz,R. and
            Dahlhaus,R.
  TITLE     Simiate is an Actin binding protein involved in filopodia dynamics
            and arborization of neurons
  JOURNAL   Front Cell Neurosci 8, 99 (2014)
   PUBMED   24782708
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4299)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   6  (bases 1 to 4299)
  AUTHORS   Derlig,K., Giessl,A., Brandstatter,J.H., Enz,R. and Dahlhaus,R.
  TITLE     Identification and characterisation of Simiate, a novel protein
            linked to the fragile X syndrome
  JOURNAL   PLoS One 8 (12), e83007 (2013)
   PUBMED   24349419
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL929577.9.
            
            On Feb 6, 2007 this sequence version replaced XM_987540.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660811.205152.1, BC026590.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-398               AL929577.9         20140-20537
            399-450             AL929577.9         21407-21458
            451-580             AL929577.9         21965-22094
            581-657             AL929577.9         23493-23569
            658-727             AL929577.9         23689-23758
            728-4299            AL929577.9         23845-27416
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 31.66 cM"
     gene            1..4299
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /note="actin binding transcription modulator"
                     /db_xref="GeneID:230234"
                     /db_xref="MGI:MGI:2677850"
     exon            1..398
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     exon            399..450
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     exon            451..580
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     exon            581..657
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     exon            658..727
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     exon            728..4299
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4269..4274
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /note="hexamer: AATAAA"
     polyA_site      4295
                     /gene="Abitram"
                     /gene_synonym="Fam206a; simiate"
                     /note="major polyA site"
ORIGIN      
        1 gtcaccgggt gggtgtggcc agacgcgcct cctcaggagc tcgagggtgc tcagagggtc
       61 caggggatcg gggagccctc acccggcaga ggcaggacct tgctgtctgc tgtccctcag
      121 ctctttgaca cccggttgtt tttgccccac agttgggctt tggcccagga tcacaggtga
      181 ctggggtcgg ggagggagtt tggccgccag ccggggagtc gcgcgcgtgc gcacgacacc
      241 aaccggctcc cacgcgccgg aactacgctc ctggactaga gggatggaag agctccgctg
      301 ccccgaagcc aagctggcgc caccagaggt agtcatagct accgaagccc cgccaccctc
      361 ccttgtggat cgatacttca ctcgctggta taaagcggat gttaaaggaa aaccctgtga
      421 ggaccactgt atactccagc actccaaccg aatctgtgtc atcacactgg caggatccca
      481 tccagttctt caaagtggca aagccattca aaggatttcc tatcagatca gtaacaattg
      541 cagcagactt gagaacaaag tatctgggaa atttaagcgg ggggcacagt ttctaacaga
      601 gcttgcacct ctgtgtaaga tatactgctc tgatggagag gaatatacca tatctagctg
      661 tgttagaggt cgattgatgg aggtgaatga aaacattctt catcagccat ctcttcttca
      721 agaaaagccg tccactgaag gctacattgc agttgtatta cccaaatttg aagaaagtaa
      781 aagcgtaaca gaagggttgc tgacacagca acagtatgaa gaggttgtgg taaaacgcac
      841 taatgccaca gccaccacgc cctgagtctt tcgatggagg cagcactgga ttctcagcct
      901 acccggccta acccatcagt gccctgaaga cagccagtgt gtatgaagca ttcctcgcag
      961 ccgcctagcc gagagagaag cctaaacctt cacctaacct aatttccctc ctttgtctta
     1021 catcacaagc cttgttccca tctgtattca ggctctcaga cctgccttgc ccaggctctt
     1081 gctttgtgtg ctgggaagcg cacttgtggg tgttcacttg cgtatacgtc agaaaacaac
     1141 ttcaagtgct ttttttaacc acagtttctc attggcttgg aactttgcca gatagctcat
     1201 gtacttccag ggaggtacct gtgttctctg cctcccacct tcccaggctg gtattacaag
     1261 tacacaccac catgccctcc tttatatggg cctggaaacc caaactctgg gcttcatgct
     1321 ttcaagttgt attagttact gttcagttgc tgtgacaaaa taccacaacc aaaagcaact
     1381 tcacaaagac tttatctggg cttgtagtcc agaggactag atgactatag cagtgggaag
     1441 gcaaggtagc cagggcagga agctaagaga tcccatccct accacacacc aagactgctc
     1501 ttggtgaact ggaaggagaa tgaggttata aacaggccct ggtgatacaa ttccccatca
     1561 agactttctg tcctaaaagt cccataagcc cccccaaaca gtaccaatga ctggggacca
     1621 agtgttcaaa tacctaagtc taaaggggtc atttttcatt caatctacaa cattcttccc
     1681 ataatggcta taggctcata gtcaggtcat gcaaaatgta gttagtccaa tatcaaaagt
     1741 tcccatagcc gttaatagtc tcagtgctgt tccaagatct cttcagagac tcaatgcaat
     1801 gtcttatctc ccctgtgaat cagagagcca ggaacatact tccaacacac aatggcacag
     1861 aatatacatt cccattccaa aaggaagggg tgatgacata gtgagggaat attggaccaa
     1921 agagtaaaag catgatgaaa gccagaccct gcagctccat attctctatc taagggttta
     1981 gtttctgaga tgcctctgac ccgtccacac tgctgcctgt aacagatcat tctctggtga
     2041 ttctgctctg tgcagctctt ccttggcaga tgtctcacaa cttgtatttc cagtgtcttg
     2101 ggatttgtgc cacaacccaa attttacctt gacagcttca cagtggcctc tcatggcctt
     2161 gcagaaactc tgtctctgcc acatgtttcc tcagtgactt tctgaagcca ggaagaatcc
     2221 acttttcatt cttgcatctt ttatgcctgc aaagctagta ccatgtggaa aataacttga
     2281 aaaatagact gtcagcttac agtgcctttc acgtccacgg cagctcttgt atggtggtgc
     2341 tttctccaag cgaacagcca ggttcttaat gctgtctttc agagtggagg tttatctgaa
     2401 aggattctct ccttgaccaa cttccactgt cccagtgttg agcaagagac actttaaaaa
     2461 actttattga ttctctgtga gtttcatatc atgcacccca gtcccactca tctccctgtc
     2521 cctcataata gcccttcacc cttgcaatct cctcccaaaa taaaagccac acacacacac
     2581 gaacaaaaca aagcttagat aatatctcgt ggaaagtaga atatcagagt gtgtcccaca
     2641 gtctatacgt ctgtctgtgc atcctcactt gcaaatgttc attgcagtga atggttggtc
     2701 tggttcgaga tctctgactt tgtgacacca tcaatattgt atcctcagcc aggcgtgatg
     2761 gcgcacacct ttaatcccag cactcaggag gcagaggcag gtgggtttct gagttcgagg
     2821 ccagccttgt ctacgaagtg agttccaggt cagccagggc tatacagaga aaccccgtct
     2881 tgaaaaacca aaaagatata ttgcatcctc ctcgggactc ctcccagtta ttctgttgtt
     2941 gctctgtgtc atggaggtcc tgcagctttg gagccgcagg actggtccct tcacagattg
     3001 aggagatttg ggggtgggcc aattcagagt cctagacctg agcctggcgg tagctgagct
     3061 ggccaagagg ccacctcttc cttatctgta ccacctggag gagccctttt tctttcttaa
     3121 atgtgtgagt gctttgtctg catgtacatt cgcatactag aagagggcat cagattcctt
     3181 tacagatagt catgagccat catgtggttg ctgggaattt aactcagaac ctctggaaga
     3241 acagtcactg tccttaatca ctgagccatc tctcctgccc aaaccagggg acttcttaat
     3301 agccccagtc tctaataata gcagcctttc tcagtacatg cctcccaggt cattaagtca
     3361 atattgagct tctctgtgtt ctcttcacca agctgtacac ttggtattta cccccaacgt
     3421 gcttgttttc actgatcaag tctatactgt cttgaaatag ctagtggcag agaaatcaga
     3481 ccattacttt ttaattcagc gtcatgccaa atctcaggac ttggatagaa agcaggcaga
     3541 ttcttcgtca agggtcacat aaatggcctc cagctacttt gctaacagag actgtttgcc
     3601 tctaaagccc caggagccag ggcctctact gtcaatatta ttccaagcac tatagtcttc
     3661 taggcttaaa acagcaagtg ctgttccaca gtgctctcag cattcaccca tttttctggt
     3721 ccaaagttcc agagttccac atttaaaaaa aaatgccctc atggtcacat ttttttcaca
     3781 gcaacactct cacttgttgg tagcttctgt attagttgcc tatctgttgc tgggataaaa
     3841 caacgtgacc aaaagcttac ggcctcaggg agctagatgc tcatggcagc aggcacaaga
     3901 agctgcaaga ccacacatca gcacaccctg ggagcacaca gtgaagtaga ccttggctgt
     3961 aaacacaaag cctgccccca atggcatgcc tcctccagca actctgtatc ttaaaagttc
     4021 ataacatccc ccaacaacag cgccaccagc tagggaccaa gtgttcagtt acttgagacc
     4081 aaggcacttt tcctccagtc tacagcagaa ggcaagccct acactgacgg agccttttct
     4141 ccagcctcac tcttcctctc ttgctgctct aacaagtggc aaataaggaa tgcttttctg
     4201 atgagaaaac acaaagctcc tgagaaagat tgtggtttta cagttctgtc accagggagt
     4261 aaactgttaa taaaccgttc ctcgactttt taaaaggtg
//
