LOCUS       NM_001081119            5074 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus abhydrolase domain containing 13 (Abhd13), transcript
            variant 2, mRNA.
ACCESSION   NM_001081119 XM_133990
VERSION     NM_001081119.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5074)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5074)
  AUTHORS   Yokoi,N., Fukata,Y., Sekiya,A., Murakami,T., Kobayashi,K. and
            Fukata,M.
  TITLE     Identification of PSD-95 Depalmitoylating Enzymes
  JOURNAL   J Neurosci 36 (24), 6431-6444 (2016)
   PUBMED   27307232
REFERENCE   3  (bases 1 to 5074)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   4  (bases 1 to 5074)
  AUTHORS   Vats,K.R., Ishwad,C., Singla,I., Vats,A., Ferrell,R., Ellis,D.,
            Moritz,M., Surti,U., Jayakar,P., Frederick,D.R. and Vats,A.N.
  TITLE     A locus for renal malformations including vesico-ureteric reflux on
            chromosome 13q33-34
  JOURNAL   J Am Soc Nephrol 17 (4), 1158-1167 (2006)
   PUBMED   16565260
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY742957.1, AK044407.1, AK032495.1 and AI553397.1.
            
            On Feb 6, 2007 this sequence version replaced XM_133990.7.
            
            Transcript Variant: : This variant (2) differs in the 5' UTR
            compared to variant 1. Both variants 1 and 2 encode the same
            protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.209942.1,
                                           SRR1660815.243746.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               BY742957.1         2-148
            148-3138            AK044407.1         2-2992
            3139-5070           AK032495.1         1188-3119
            5071-5074           AI553397.1         2-5                 c
FEATURES             Location/Qualifiers
     source          1..5074
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 4.53 cM"
     gene            1..5074
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="abhydrolase domain containing 13"
                     /db_xref="GeneID:68904"
                     /db_xref="MGI:MGI:1916154"
     exon            1..303
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            304..5074
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             324..1337
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="abhydrolase domain-containing protein 13;
                     alpha/beta hydrolase domain-containing protein 13"
                     /codon_start=1
                     /product="protein ABHD13"
                     /protein_id="NP_001074588.1"
                     /db_xref="CCDS:CCDS40217.1"
                     /db_xref="GeneID:68904"
                     /db_xref="MGI:MGI:1916154"
                     /translation="MEKSWMLWSFIERWLLALASWSWALCRISLLPLIVTFHLYGGIV
                     LLLLIFVSIAGILYKFQDVLLYFPEQPSSSRLYVPMPTGIPHENIFIRTKDGVRLNLI
                     LVRYTGDNSPYCPTIIYFHGNAGNIGHRLPNALLMLVNLRVNLVLVDYRGYGKSEGEA
                     SEEGLYLDSEAVLDYVMTRPDLDKTKVFLFGRSLGGAVAIHLASENSHRISAIMVENT
                     FLSIPHMASTLFSFFPMRYLPLWCYKNKFLSYRKISQCRMPSLFISGLSDQLIPPVMM
                     KQLYELSPSRTKRLAIFPDGTHNDTWQCQGYFTALEQFIKEVIKSHSPEDMTKTSSNV
                     TII"
     regulatory      1947..1952
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1968
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="major polyA site"
     regulatory      2899..2904
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2925
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="major polyA site"
     regulatory      5050..5055
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5074
                     /gene="Abhd13"
                     /gene_synonym="1110065L07Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtgtcctgc gcatgcgcat aggggtgcac aggttggctt cgcgctcccg ggaggaagct
       61 ggagaacagg ttatgtgggg gccggcgggg ttatttgcca gggacaccgc gcgcgagccg
      121 gaagtggagg ctgcgccagc tgggcccgcc gcgccgcagg agctccgggc tagacagtgg
      181 cgacggcggc ccctcggcgg gaggaagacg atgaggagcg gcgggggcgg cgcggggcct
      241 cgctgcagcg cggagccggg ttccgagccc gcggccgact gcgcagcccg cccgcgagcc
      301 tgagatacct acgtggagct accatggaaa aatcctggat gctgtggagc ttcattgaaa
      361 gatggctact ggccttggcg tcctggtctt gggctctctg ccgcatctct ctgttacctt
      421 tgatagtgac ttttcatctg tatggaggca ttgtcttact tttgttaata ttcgtatcaa
      481 ttgcaggtat cttatataaa ttccaagatg tcttgctcta ctttccagaa cagccatctt
      541 cttcccgcct ttatgttccc atgcccacgg gtattcccca tgaaaacatt ttcatcagaa
      601 ccaaagatgg agtgcgcctg aatctgatct tggtgagata cactggagac aattccccct
      661 actgcccgac cataatttat ttccatggaa atgccggcaa cataggccac aggttaccaa
      721 acgcactgct aatgctggtg aacctcagag tgaatcttgt gcttgtggat taccgggggt
      781 acgggaagag cgaaggagag gccagtgaag aagggctgta tttggattct gaagctgtgc
      841 tagactatgt catgacgaga cccgacctcg ataagaccaa ggttttcctt tttggccgct
      901 ccctgggagg agcagtggcc attcacttgg cttctgagaa ttctcacagg atttcagcca
      961 tcatggtgga gaacacattc ctaagcatac cacacatggc cagcactcta ttttcattct
     1021 tcccaatgcg ttaccttcct ttatggtgct ataaaaataa gtttctgtcc tacagaaaga
     1081 tctcccagtg caggatgcct tctctcttca tctctggcct ctctgaccag ttgattccac
     1141 ccgtgatgat gaaacagctc tacgagctct ctccatcccg gactaagaga ttagccattt
     1201 tcccagatgg gacgcacaac gacacatggc agtgccaagg ctacttcact gcactagaac
     1261 aatttatcaa ggaagtgatc aagagtcatt ctcccgaaga catgacaaaa acatcatcca
     1321 atgtcaccat catctgatgc catcctcttg atggatgcct tgggtttcaa tgtgtggaga
     1381 atgatgtctt ttctgggtgt gtgttcatac tggtctgcac agtgactctg agctttgaaa
     1441 ggcctcagca ctccattctg atgatcctgt aactttccaa attttcagac tgggcttctt
     1501 aagagtgctt gatattctca tcagaactcc agcctagtga aataccctta actttagttt
     1561 aacacgctgg tttgatagat gtcatccaaa aggttcttgc tggttaagtg gtataatcta
     1621 agttgtactc agatggagat agaaacaaga aaccttcagg tgtctgtctt tcctttagtg
     1681 attattggga caatcacggt tagcaagcaa gtgctgctgc gttttcacct taaacattaa
     1741 gatgaagtgc atggtggtgg tttattcttg acttatgcaa tgcggtattt ttaatgtaaa
     1801 taacactggt cacatgccaa tgtatatggt ttcctgggtt atatctattt ttatgtaaac
     1861 tctattttat ttcggtgagg aatgagtgtg aggcctgtgg gcagattcca tgttctgctg
     1921 ctactgagat ccagcttttt cctaataata aacaggacct ttttccaata tagatgtgcc
     1981 gtgtttttgt taggagctgt ctggatcgtg gctagtgaga taggaggtta gcatcttact
     2041 acagctttct ttgtatagtg aactttttaa cattagtgat tttggttgca gatgaaattt
     2101 tagcctgtca gtttgtgaat cttcagctaa acaataacag ccacagcaag ggatagaact
     2161 agctgatggt tgagtgagga taactcagca cgtgtgcaca cggccttatg caatcctttc
     2221 atctgaatga agtcccagta cctagaaggt gcctgacctg acagaggcaa gcatcattta
     2281 ttgaactgtt tggaagtaaa tttcagaatg aaagaaaaac aaaaaagcaa ataaccaagt
     2341 atggcttaat gttgcagttc tgtgtaatgg gctatataaa gtcttagggg aatttgtcag
     2401 gttttttgtt tgtttgtttg tcccagccta ttacacatgt agcagttaag gagctgtagg
     2461 tgggaagttg tgagcccttt aagcctggaa gcatttagta accttccagg caggaggtgg
     2521 aacctgccag gtcctttccc acagtcctca ccaggtagct gtgcttgagc ccttcacact
     2581 aagtcagctc ctacccacga ctgcagatgg cttggctgta tgattgacct tccacagcag
     2641 ctagagcaca gtgataatga ggcagtcgtc tcgaccttaa tttacaactt tccaggaaca
     2701 tagggctaga agtacttttg ccaagtagca ttcttagcct tcattttatg ccaatgttta
     2761 gaaaacaata atgtatagca agtataattt ctaaagaata atgcttttct ataaattatt
     2821 aattgtaaag agtcttgttt tttaaagagt tggtaactcg ccgtggaggg tgtattttgt
     2881 atgtgtaaat tcaccacaat taaaggctgc ttttcatctt gtcaatcttt gctatgtaga
     2941 atgactatcc tgaatactaa tctgccgaaa gggcaatatg tagcaacagc cagaatgtag
     3001 acttgagctg ccatggcata cttagttagt ttttacattt acggagtact gtattggagt
     3061 cctgttttca ttaatccctt ggcctggagg agtttaccaa tgtgttgtgt caaccactaa
     3121 aatggaacag ttgctccttc cttgctgttt gctgctttct gttcagcttt tgctgactgg
     3181 gacttgtggg gtggaagaac agcattcagt tgtactaact tgctctccta gagagagttc
     3241 ttcacttcag cagagacaac tatgtttaag gatgtagaac atctctcatt accagctatg
     3301 tgtttgatat gattacctta gatgagtagg gatagaaaac caactcaaac ttttgagggc
     3361 cgtgatagac cccggtatca tttctgcaag ctctcatttg gtctctgaaa catgactact
     3421 gcaggatcat ttcttcactt cagactcttc attggtggga atggccatgg tctgtcaatc
     3481 tctaactcac tgagaaatga gagaaatgga taaacttaga agtcttaaat tccatagttt
     3541 aaagaataat agagtgagac ttaagaaaaa agaattgtac agagaatact gcatactaaa
     3601 agaagaatgt atttgttgca gactaaagga tactaataga ctagaaacca cttgacagca
     3661 gtttgtgagg tggatggaca gaaaacttca gaacacaatt ttagatcaaa gccctaacat
     3721 aagatgaccc ttgtcagcct catgtaacta tcttaaggtt ttgactgtga tgacacatcc
     3781 attaaacgtt gctgtaaaat gggtcatgca acatcttaag ttggccggat acacttatgg
     3841 aaggactaga gacacttaaa tgttgagaca gatcatggtt ctggtaacat cactggagtg
     3901 atagcatgtg tgtccctgaa gttaacacct actgaggctt gcccttctgt taggcttggc
     3961 ttggttgtga gtagacctga tagagatgat taaagctatc ttagatagct ttcacatggg
     4021 tcacatatca gatagcttgc atatcagata tttacattat aattcataac agcaaaatta
     4081 tatttatgaa gtcgcaacaa ataattttat gattggagag tcacaacagc atgagggaac
     4141 tgtattaaag ggtcacaaca ttggcaaggt tgagagccat tgctctaggc catcattaca
     4201 tacttgagcc ctctgatact ctctccctca agcctttttc ctattgtgtt ggacaattat
     4261 atattttaaa gagaactaca aagaaaaatt agtcataagt aactcttttg gaatgtttac
     4321 ttaaatttag gtattgtcat gtgactcagg taaagttaga attgacacag aacaggggtc
     4381 tattttttag cttgctagag tagaaaatgc aaaactatat tctcactgca tatgcacctc
     4441 gctccccgtc atcggaagtg ctgctgcctt gtgtgttagg caggcagtca tcttattcta
     4501 gtcaacattt gccaatgata cagagatacc tccatttata ttttgtattt taaaaaagta
     4561 gattaaagat agaactgtat aacccacact ttttgacaaa aaagtgcaat ataaacatat
     4621 aacgggtgtg tgtgcaacat catttataac aatttctgtt ggtacaaggt gttctaaagt
     4681 tcatcttcca tataggagca ttcagtatga agtaagttag tccagcttca taatctgagc
     4741 cataattttg ttattgccat actttctttg aaatagtaat aaaattttat aactcaaaat
     4801 ttaatgtcct cttaactatg cgctacccat ggcaaggaaa cattgtgggg ttttgtggtt
     4861 ggttttggtc cagatttttt tttttctttt ccacatttct cttaaggtat actttctatt
     4921 tttctgtact gacatgcaat aaattgatac atgaacagct tgattattgt cagatagttt
     4981 gtactcagtc ttttaaaaaa ttctatccat gtacagtcta ccgtaggtca ttaagttatc
     5041 taatggttca ataaaaccat gagtttcact gaaa
//
