LOCUS       NM_013852               3288 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus ATP-binding cassette, sub-family F member 3 (Abcf3),
            transcript variant 1, mRNA.
ACCESSION   NM_013852
VERSION     NM_013852.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3288)
  AUTHORS   Peterson,E., Shippee,E., Brinton,M.A. and Kaur,P.
  TITLE     Biochemical characterization of the mouse ABCF3 protein, a partner
            of the flavivirus-resistance protein OAS1B
  JOURNAL   J Biol Chem 294 (41), 14937-14952 (2019)
   PUBMED   31413116
  REMARK    GeneRIF: characterization of ABCF3 protein and its interaction with
            OAS1B
REFERENCE   2  (bases 1 to 3288)
  AUTHORS   Courtney,S.C., Di,H., Stockman,B.M., Liu,H., Scherbik,S.V. and
            Brinton,M.A.
  TITLE     Identification of novel host cell binding partners of Oas1b, the
            protein conferring resistance to flavivirus-induced disease in mice
  JOURNAL   J Virol 86 (15), 7953-7963 (2012)
   PUBMED   22623793
REFERENCE   3  (bases 1 to 3288)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 3288)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   5  (bases 1 to 3288)
  AUTHORS   Schriml,L.M. and Dean,M.
  TITLE     Identification of 18 mouse ABC genes and characterization of the
            ABC superfamily in Mus musculus
  JOURNAL   Genomics 64 (1), 24-31 (2000)
   PUBMED   10708515
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD540120.1, BC032923.1 and AC087898.19.
            
            On Feb 9, 2007 this sequence version replaced NM_013852.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030626.1, BC032923.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                CD540120.1         1-59
            60-2505             BC032923.1         1-2446
            2506-3288           AC087898.19        143511-144293       c
FEATURES             Location/Qualifiers
     source          1..3288
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 12.46 cM"
     gene            1..3288
                     /gene="Abcf3"
                     /note="ATP-binding cassette, sub-family F member 3"
                     /db_xref="GeneID:27406"
                     /db_xref="MGI:MGI:1351656"
     exon            1..143
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..2200
                     /gene="Abcf3"
                     /note="ATP-binding cassette, sub-family F (GCN20), member
                     3"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family F member 3"
                     /protein_id="NP_038880.1"
                     /db_xref="CCDS:CCDS28049.1"
                     /db_xref="GeneID:27406"
                     /db_xref="MGI:MGI:1351656"
                     /translation="MATCADILRSEFPEIDGQVFDYVTGVLHSGSADFESVDDLVEAV
                     GELLQEVSGDSKDDAGIRAVCQRMYNTLRLAEPQNQGNSQVLLDAPIQLSKIMENYDC
                     DTKLPGLLKREQSSTVNAKKLEKAEARLKAKQEKRSEKETLKTSNPLVLEEASASQAG
                     SRKESRLESSGKNKSYDVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTT
                     LLKMLATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDTVREDLLRQERELSLRIA
                     AGRAEGSEAAQLAEIYGKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRM
                     RLALARALFARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIAT
                     DIIHLHSQRLDGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNANR
                     ASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHSIF
                     SRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVE
                     QLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQM
                     TMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFIRLVCKELWVCEN
                     GSVTRVEGGFDQYRALLQEQFRREGFL"
     exon            144..291
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            292..371
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            372..418
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            419..516
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            517..639
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            640..906
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            907..987
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1047
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1104
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1127
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1183
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1384
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1461
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1462..1506
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1639
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..1728
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1729..1820
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..1953
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            1954..2041
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..3288
                     /gene="Abcf3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2486..2491
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abcf3"
                     /note="hexamer: ATTAAA"
     polyA_site      2503
                     /gene="Abcf3"
                     /note="major polyA site"
     polyA_site      2929
                     /gene="Abcf3"
     regulatory      3041..3046
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abcf3"
                     /note="hexamer: AATAAA"
     polyA_site      3065
                     /gene="Abcf3"
     regulatory      3178..3183
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Abcf3"
                     /note="hexamer: TATAAA"
     polyA_site      3204
                     /gene="Abcf3"
ORIGIN      
        1 gaggaagggc agggaggcgg tcctaggccc aagtctcacc acgactgcgc agattggatc
       61 ccgagtgaac atggcgactt gcgctgatat cctgcgaagc gagttccctg aaattgacgg
      121 gcaggtcttc gactacgtga ccggtgtctt gcacagtggc agcgcggatt tcgagtctgt
      181 ggatgacctg gtggaagctg tcggggaact attgcaagaa gtgtccgggg acagcaagga
      241 tgacgctggc attagggctg tctgtcagcg catgtacaac actctacgcc tggctgaacc
      301 gcagaaccag ggaaacagcc aggtgctact ggacgccccc atccagttgt cgaagataat
      361 ggaaaactat gactgtgaca ccaaacttcc aggactgcta aagagggaac agtcctcgac
      421 agtaaatgcg aagaaactag agaaggctga agctcgactg aaggcaaagc aggagaagcg
      481 ttcagagaag gaaacactga agaccagcaa ccctctagtc ttggaggagg cgtcagctag
      541 ccaggcaggc agcagaaaag agagtcgatt ggaatcatct ggcaagaaca agtcctatga
      601 tgtgcgaatt gagaactttg atgtctcttt tggtgacagg gtactgctgg ctggagcaga
      661 tgtaaacttg gcatggggcc gacgctacgg cctggtggga cgcaatggtc tggggaagac
      721 gacattgcta aagatgctgg ctacccggag cttgcgtgtc ccagcccata tttccctact
      781 gcatgtagag caggaagttg ctggagatga cactcctgcc ttgcagagtg tgctggaaag
      841 tgacaccgta cgagaggacc tgctacggca ggaacgggag ctcagcctca ggattgccgc
      901 tggcagggca gaaggttcag aagctgcaca gctggcagaa atctatggga agctggagga
      961 gattgaggca gataaggcac ctgccagagc atcagtcatt cttgcgggcc ttggttttac
     1021 tcctaaaatg cagcagcagc ctaccaggga gttctcaggt ggctggagga tgagattggc
     1081 cttagcccga gctctctttg ccaggccaga ccttctgctg ttagacgaac ccacaaacat
     1141 gctggatgta agggccatcc tgtggttgga gaattacctg cagacgtggc cctccactat
     1201 cctagttgtc tctcatgacc gaaacttcct gaatgccatt gccacagaca tcatccactt
     1261 gcatagccaa cggctagacg gttaccgggg ggactttgaa accttcatca agagcaagca
     1321 ggagcgcctt ctcaaccagc agcgcgagta tgaggcccag cagcagtatc gccaacacat
     1381 ccaggttttc atcgaccgtt ttcgatacaa tgcaaacaga gcctctcaag tgcagagtaa
     1441 actgaagatg ttggagaagc tacctgaact aaaaccggtg gacaaggaat ccgaggtggt
     1501 gttgaagttc cccgatggat ttgagaagtt ctcaccgccc attctgcagc tagatgaggt
     1561 ggatttctac tatgatccta agcacagcat cttcagtcgc ctgtctgtct ctgctgatct
     1621 tgagtcccgc atctgtgtgg ttggggagaa tggggctggg aaatctacta tgctgaagct
     1681 gctcatgggg gacctgtctc ctgttcgggg tatcaggcat gcccacagga atctgaagat
     1741 aggctatttt agccagcacc acgtggaaca gctagacttg aatgtcagtg ctgtggaact
     1801 cctggctcga aaatttcctg ggctacctga agaggaatat cgtcaccaat tgggccggta
     1861 tggcatctct ggagaactgg ccatgcgtcc tgttgcgagc ttatctgggg gccagaaaag
     1921 ccgggtagcc tttgctcaga tgaccatgcc ttgccccaac ttctatattc tggatgaacc
     1981 cacaaaccac ctggacatgg agaccattga agctttgggc caggctctca acaacttcag
     2041 gggtggtgta attctggtat ctcatgatga gcgcttcatc cgactggtgt gcaaggagct
     2101 gtgggtgtgt gagaacggca gtgtcactcg ggttgagggg ggctttgacc agtaccgggc
     2161 cctcctccaa gaacagttcc gccgggaggg cttcctctag agccccagtt gagtaaggac
     2221 tgtgcctagg acgtggactg gttttggaag atccctgagc taccatgtag gcaaccaact
     2281 ccaagcttag gactttccct acttggggac agccttattt cccaaatttc tcttttcctt
     2341 tcaactggag catcctctgc acaatgtggg agacctatcc aagggcctgt gaaacagtcc
     2401 tgaaggaaaa ggatagggga tgctatctgg ggttataagt accccactgc ccagcttggc
     2461 agggcccaac atggctgctg tgtaaattaa atcccctcct ggatctcttt tgcctctctg
     2521 ctcgttcatg ggcagggctt gccatggttt tctgctctgg gttctgggct ctctgttact
     2581 ttcctgtgat gtgactgtca gtcatacaga caaagcagca gcagtccagc cttcctcttg
     2641 ttgggcaatg tcatccgtct gtccctgagg tgagcttgag ctaggggatg gagaagggtg
     2701 tattgggatt gttctggtgc tcacacccta gcctgaaatt cacctcgggt ggggggtgtt
     2761 gagaggaggg tcgtgggctc tactgtctca gcccctgctg cttgggagtt tgaactgact
     2821 gaattctggc ctcacacggc tcaccaactg ctttctggga tctctggccc tgtctctcat
     2881 ttctataatc tggaccttaa gggcacaaga gaaacctttg ttgttcccag tttgcattaa
     2941 tgatttatgt tcttgttttc cctctaacca tgtagaagca gcctgggaag tagggaattg
     3001 tctaactgga aaaaaaaaat aggacacatg attcttttca aataaagcag acttgtaaga
     3061 gaggaggaca cgtgcaagag catgtgcctg tggtccaggc acattgaggg tgaagccgga
     3121 ggctcatctg aatccatgta atccatgaat ctcctggcct gtgagacctg cctgttgtat
     3181 aaaagaggga agagagctgt ctaacaggag tctggcctga aagttagttc tcaaggactt
     3241 agctgctata attaatcagt atgtagaaga cattaaaatg gagtcaac
//
