LOCUS       NM_013854               3207 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Mus musculus ATP-binding cassette, sub-family F member 1 (Abcf1),
            mRNA.
ACCESSION   NM_013854 XM_128626
VERSION     NM_013854.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3207)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3207)
  AUTHORS   Arora,H., Wilcox,S.M., Johnson,L.A., Munro,L., Eyford,B.A.,
            Pfeifer,C.G., Welch,I. and Jefferies,W.A.
  TITLE     The ATP-Binding Cassette Gene ABCF1 Functions as an E2
            Ubiquitin-Conjugating Enzyme Controlling Macrophage Polarization to
            Dampen Lethal Septic Shock
  JOURNAL   Immunity 50 (2), 418-431 (2019)
   PUBMED   30770245
  REMARK    GeneRIF: ABCF1, an ATP-Binding Cassette (ABC) family member
            protein, which possesses an E2 ubiquitin enzyme activity, through
            which it controls the Lipopolysaccharide (LPS)- Toll-like
            Receptor-4 (TLR4) mediated gram-negative insult by targeting key
            proteins for K63-polyubiquitination.
REFERENCE   3  (bases 1 to 3207)
  AUTHORS   Wilcox,S.M., Arora,H., Munro,L., Xin,J., Fenninger,F.,
            Johnson,L.A., Pfeifer,C.G., Choi,K.B., Hou,J., Hoodless,P.A. and
            Jefferies,W.A.
  TITLE     The role of the innate immune response regulatory gene ABCF1 in
            mammalian embryogenesis and development
  JOURNAL   PLoS One 12 (5), e0175918 (2017)
   PUBMED   28542262
  REMARK    GeneRIF: Abcf1 expression in embryos is required for development
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3207)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   5  (bases 1 to 3207)
  AUTHORS   Bae,S., Ha,T.S., Yoon,Y., Lee,J., Cha,H.J., Yoo,H., Choe,T.B.,
            Li,S., Sohn,I., Kim,J.Y., Kim,C.S., Jin,H.O., Lee,H.C., Park,I.C.,
            Kim,C.S., Jin,Y.W. and Ahn,S.K.
  TITLE     Genome-wide screening and identification of novel proteolytic
            cleavage targets of caspase-8 and -10 in vitro
  JOURNAL   Int J Mol Med 21 (3), 381-386 (2008)
   PUBMED   18288386
  REMARK    GeneRIF: Six putative caspase substrates, including five novel
            proteins (ABCF1, AKAP1, CPE, DOPEY1 and GOPC1) that may be targeted
            specifically by the initiator caspases 8 and 10 during the early
            stages of apoptosis, were identified.[caspase 10]
REFERENCE   6  (bases 1 to 3207)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 3207)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   8  (bases 1 to 3207)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 3207)
  AUTHORS   Schriml,L.M. and Dean,M.
  TITLE     Identification of 18 mouse ABC genes and characterization of the
            ABC superfamily in Mus musculus
  JOURNAL   Genomics 64 (1), 24-31 (2000)
   PUBMED   10708515
REFERENCE   10 (bases 1 to 3207)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC063094.1.
            
            On Jan 1, 2004 this sequence version replaced XM_128626.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC063094.1, SRR7345562.4341715.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164143 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3207
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.8 cM"
     gene            1..3207
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /note="ATP-binding cassette, sub-family F member 1"
                     /db_xref="GeneID:224742"
                     /db_xref="MGI:MGI:1351658"
     exon            1..105
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..2546
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /note="ATP-binding cassette, sub-family F (GCN20), member
                     1"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family F member 1"
                     /protein_id="NP_038882.1"
                     /db_xref="CCDS:CCDS28713.1"
                     /db_xref="GeneID:224742"
                     /db_xref="MGI:MGI:1351658"
                     /translation="MPKGPKQQPPEPEWIGDGEGTSPADKVVKKGKKDKKTKKTFFEE
                     LAVEDKQAGEEEKLQKEKEQQQQQQQQKKKRDTRKGRRKKDVDDDSDERVLMERLKQL
                     SVPASDEEDEVPAPIPRGRKKAKGGNVFEALIQDDSEEEEEEEENRVLKPAKPEKNRI
                     NKAVAEEPPGLRSKKGKEEKSKGKAKSKPAAADSEGEEEEEDTAKEKEPPQQGKDRDK
                     KEAEQGSGEEKEEKEGDLKANDPYANLSKKEKKKLKKQMDYERQVESLKAANAAENDF
                     SVSQAEVSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGK
                     TTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEERRLQGQ
                     LEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRM
                     RVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCT
                     DIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQ
                     TKEVLTRKQQKCRRKNQDEESQEPPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTF
                     GYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKI
                     GFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK
                     ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDARLITETN
                     CQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRPRD"
     exon            106..152
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            153..239
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            240..369
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            370..407
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            408..518
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            519..590
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            591..701
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            702..800
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            801..923
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1110
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1111..1250
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1399
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1483
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1608
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1609..1893
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1894..1968
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            1969..2039
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            2040..2072
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            2073..2241
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            2242..2306
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            2307..2379
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
     exon            2380..3150
                     /gene="Abcf1"
                     /gene_synonym="Abc50; D17Wsu166e; GCN20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgccgctgg aggactctta actgccgccg cgatgccgaa gggtcccaag caacagccgc
       61 ccgagcccga gtggatcggg gacggcgagg gcacgagccc cgcggacaaa gtagtgaaga
      121 aaggaaaaaa ggacaagaag accaaaaaga cgttctttga agagctggca gtagaggaca
      181 aacaagctgg ggaagaggaa aaattgcaga aggagaagga gcagcaacag caacagcagc
      241 aacagaagaa aaagcgagac accaggaaag gccgtcggaa aaaggatgtg gacgatgata
      301 gtgatgagag agtgctcatg gagcgactta agcaactgtc tgtgccagcc agtgatgagg
      361 aagatgaggt gcctgccccc ataccccgag gacggaagaa ggccaagggt ggaaatgttt
      421 ttgaagccct gattcaggat gacagtgagg aggaggaaga ggaggaagaa aaccgtgttc
      481 tcaagcccgc caagccagag aagaatcgca tcaataaagc cgtggctgag gaacctcctg
      541 ggctcaggag taaaaaggga aaggaggaga aatcaaaagg gaaagccaag agtaaacctg
      601 ctgctgcaga cagtgaaggg gaagaggagg aggaggacac agctaaagaa aaggagcctc
      661 ctcagcaagg gaaggacaga gacaaaaagg aggctgagca gggctcaggg gaagagaagg
      721 aagagaaaga aggggacttg aaggcaaacg atccctatgc caaccttagc aaaaaggaaa
      781 agaaaaagct aaagaaacag atggattatg aacgacaggt ggagtcattg aaagcagcta
      841 atgctgcaga aaacgacttc tctgtgtccc aggcagaggt gtcttcccgc caggcaatgt
      901 tagaaaatgc atctgacatt aagttggaaa agttcagcat ctccgcccac ggcaaggagc
      961 tattcgtcaa tgctgacctg tacatagtag ccggccgccg ctatgggctg gtgggaccca
     1021 acggcaaagg caaaaccacg cttctgaagc acattgccaa ccgtgccctg agcatccccc
     1081 ctaacattga cgtgctgctg tgcgagcagg aggtggtggc tgatgaaaca ccagccgtgc
     1141 aagctgtcct tcgagcagat accaagcgac tgaggttgct agaggaggag agacggcttc
     1201 agggacagct ggagcagggg gatgacactg ctgctgagaa actagaaaag gtgtatgagg
     1261 aactgcgagc taccggggca gcagctgcag aggccaaggc acggcggatc ctggctggct
     1321 tgggcttcga ccctgagatg cagaatcggc ccacacagaa gttctctggg ggttggagaa
     1381 tgcgtgtctc cctggccagg gcactgttca tggagccaac gctgctgatg ttggatgagc
     1441 ccactaacca cctggacctc aacgccgtca tctggctcaa taactacctt cagggctgga
     1501 ggaagacgtt gctgattgtc tcccacgacc agggctttct ggatgacgtt tgcactgata
     1561 tcatccacct ggacacccag cggctccatt actacagggg caattacatg accttcaaga
     1621 agatgtacca gcagaagcag aaagagctgc taaagcagta cgagaagcag gagaagaaac
     1681 tgaaggagct gaaggctggg ggcaagtcca ccaagcaagc ggaaaagcaa acaaaggaag
     1741 tcctgactcg aaaacagcag aagtgccgac ggaaaaacca ggatgaagag tctcaggagc
     1801 cccctgagct cctgaagcgt cccaaggagt acaccgtgcg cttcaccttc ccagaccccc
     1861 cgcctctcag cccacctgtg ctgggcctgc acggtgtgac gtttggctac gaggggcaga
     1921 agccactctt taagaatcta gatttcggca tcgacatgga ctcccggatt tgcatcgtgg
     1981 gtcccaatgg tgtggggaag agcacactac tcctgctgct gactggcaag ctgacaccga
     2041 ccaacgggga gatgaggaag aaccatcggc tgaaaatcgg cttctttaac cagcagtacg
     2101 cagagcagct gcacatggag gagacgccca ctgagtacct gcagcggagc ttcaatctgc
     2161 cctaccagga tgcccggaag tgcttgggcc gctttggcct ggagagccac gcccacacca
     2221 tccagatctg caaactctcc ggtgggcaga aagcccgagt tgtgtttgcg gagctggcct
     2281 gtcgggagcc tgatgtcctc atcttggatg aaccaaccaa taacttggac atagagtcca
     2341 tcgatgccct gggggaggcc atcaacgact acaagggggc tgtgatcgtt gtcagccacg
     2401 atgcgcgcct catcacagaa accaactgcc agttgtgggt ggtggaggag cagggtgtca
     2461 gtcagatcga cggcgacttt gatgactaca agcgagaggt gttggaggcc ctgggtgagg
     2521 tcatggtcaa ccgtcctcgg gattgagctc cctcctggaa gctgctgcaa ccagctccta
     2581 tggctggagt ctaggccgtc tcccctcatc cacctagaag cctgctgcaa ccagctccta
     2641 cggctggagt ctaggccgtc tcccctcatc cacctagaag cctgccatgg ctgctgccag
     2701 ctgcagcagc cacataggcc atgaaggtgg cgtgttgcct tgatgtgtgt gagagcatcc
     2761 atccgtgtgg attgtgtcct tctcaatgaa ggactgtgtt ccccttgagg taactgagct
     2821 ggcttgccca cactggctca gtctcttcag aaagaggtga cctttgctgt gctgggttcc
     2881 cctcaggcct agttaaggtg gcctcttgtc tcaagacctt tgccactcag aactgaccct
     2941 ggtccctcct tttggaaggg tactactgac tcactgacac aaacagccag aacctcaggg
     3001 ctggaggcaa gtgtctgaga cctggactgt ttcaccaaag atctggtgcc tgtggtccct
     3061 tgtctcgtgg ggacttgagg gcaggaaagg agaactctag aactgaagtc tcctttacag
     3121 gggaggaaat aaagtagtgg ggtgctgaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3181 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
