LOCUS       NM_025857               5310 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus alpha- and gamma-adaptin binding protein (Aagab),
            transcript variant 1, mRNA.
ACCESSION   NM_025857 XM_486226 XM_898582 XM_917946 XM_925380 XM_978606
VERSION     NM_025857.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5310)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT010509.10.
            
            On Oct 25, 2017 this sequence version replaced NM_025857.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159897.1, SRR9219382.44026.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               CT010509.10        123446-123571       c
            127-317             CT010509.10        109341-109531       c
            318-414             CT010509.10        109133-109229       c
            415-504             CT010509.10        108620-108709       c
            505-588             CT010509.10        106986-107069       c
            589-671             CT010509.10        90830-90912         c
            672-771             CT010509.10        89734-89833         c
            772-876             CT010509.10        87073-87177         c
            877-926             CT010509.10        86575-86624         c
            927-5310            CT010509.10        81627-86010         c
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 34.19 cM"
     gene            1..5310
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /note="alpha- and gamma-adaptin binding protein"
                     /db_xref="GeneID:66939"
                     /db_xref="MGI:MGI:1914189"
     exon            1..126
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..1004
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /note="isoform 1 is encoded by transcript variant 1;
                     alpha- and gamma-adaptin-binding protein p34"
                     /codon_start=1
                     /product="alpha- and gamma-adaptin-binding protein p34
                     isoform 1"
                     /protein_id="NP_080133.1"
                     /db_xref="CCDS:CCDS23271.1"
                     /db_xref="GeneID:66939"
                     /db_xref="MGI:MGI:1914189"
                     /translation="MAAGVPCALVTSCSATFTGDRLVQHILGTEDAVVEATSSDAVRF
                     YPWTIDNKYYSAEINLCVVPSKFLVTAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLA
                     EAWLAEVMILVCDRVCDDGINRQQAQEWCIKHGFELVELNPEELPEEDDDFPESTGVK
                     RIVQALNANVWSNVVMKSDRSQGFSLLNSLAGANRRVASAESCHSEQQEPSPTAERTE
                     SLPGHHSGACGSAGAQVDSIVDPMLDLDIQELASLTTGGGDLENFERLFSKLKEMKDK
                     AATLPHEQRKLHAEKVAKAFWMAIGGDRDEIEGLSSDDEH"
     exon            127..317
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            318..414
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            415..504
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            505..588
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            589..671
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            672..771
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            772..876
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            877..926
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     exon            927..5310
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2591..2596
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /note="hexamer: ATTAAA"
     polyA_site      2614
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /note="major polyA site"
     regulatory      5287..5292
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
                     /note="hexamer: AATAAA"
     polyA_site      5308
                     /gene="Aagab"
                     /gene_synonym="2310007F21Rik; p34"
ORIGIN      
        1 ggtacggccc aaggcggaag cagcgccggc gcggaacccg ctctgccgca gcgatggctg
       61 ccggtgtacc ctgcgcgctg gttaccagct gctccgccac cttcaccggg gaccggctgg
      121 tgcaacatat ccttgggaca gaagatgctg ttgtggaagc aacttccagc gatgctgtga
      181 ggttttaccc ctggaccatc gataacaagt actattccgc agagatcaac ctgtgcgtgg
      241 tgccaagcaa gttcctggtc actgctgaga ttgccgagtc agtccaggcg tttgtagttt
      301 actttgacag cacacagaaa tcaggtcttg acagcgtctc ctcgtggctc cctctggcag
      361 aagcatggct agctgaggtg atgatcctgg tctgtgatag agtgtgtgac gatggaataa
      421 accgacaaca ggctcaagag tggtgcatca aacatggctt tgagttggtg gaactcaacc
      481 cagaggagct gcccgaggag gacgatgact tccctgaatc tacaggtgta aagcggattg
      541 tacaagcatt gaatgccaat gtctggtcca atgtcgtgat gaagagtgac aggagccagg
      601 gcttcagcct tctcaactca ctggctgggg caaaccgcag agttgcatca gcagagagct
      661 gtcactctga gcagcaggag ccgtcgccaa cagctgagag gacagagtcc ctccctggcc
      721 atcacagtgg tgcgtgtggc tcagcaggcg cacaggttga cagcattgtc gaccccatgt
      781 tagacctgga tattcaagaa ctagccagtc ttaccactgg aggaggtgat ctggagaact
      841 tcgagagact cttttcaaag ttaaaagaaa tgaaagacaa ggctgcgacg cttcctcatg
      901 agcaaagaaa gttgcatgca gaaaaggtgg ccaaagcctt ctggatggca ataggagggg
      961 accgagatga gatcgagggc ctttcttctg atgacgagca ctaagctctt cctgctaggt
     1021 ttgactgact ccagtgccag caccgtgctc cccaagtgct tcccttctca acggggttct
     1081 cttctgccaa gattgccact agcacgctgg ccacctgact ggtttttggg gtcccttacc
     1141 tgagctttta gaaaggcgtt agggagaaat ctttgttcct gccgcataag tgactgagga
     1201 gtgaaatgac agtgtggaaa cccttcagat ctacagtctt cgttttaaga acctgggtaa
     1261 aatgaggctc ggaaatgtgt aatacaggag aaccaagtgt cagagagcac actgtgacct
     1321 cagcactgag ggtctgaggc cagcctgggc tccatgggga gttctgctgc tgtgctcgat
     1381 tgccccgttc attctgtctg caggtccgga gcttgtgcta tcggctgtgt actgtcactg
     1441 gtccccgcca agagcacagc tctgacctaa ggtgaatgct ggtgacaaga aaggcagctg
     1501 tagatgtagg atgtgcctag gggataggga acaggtggct catgggtttg tctcttagta
     1561 agtccttagt aagttcagtg tctgagttcc tgccacaaag cagcaaaagc caggtgtgtc
     1621 tctataagaa acagaggtga aagtttcctc ctctggggaa tgtaaactcc cctctcccca
     1681 ctgctgggca agggccctga gtgccctcct gaggacccag ggagcagcag tgttggttct
     1741 gagcacactg ctgacactgg cagctgtgct cttcgaccac tgagtgttct ccctggcaat
     1801 gtgaggtttc agagcaggtc tccccttctt tctgcttgga agccagaggt tgctgtcaag
     1861 gcaccagttc caagcagtgg ggggataggt gagcctcccg acagccaggt cctgagccac
     1921 catcatggtt cacttccagg gctattggct tctccatact ccagggccca gccccagggg
     1981 agcacagagc aaagttctaa aggaaaagag gggaaaaggt ctaaaagtgc gtagtctgtc
     2041 atcacagaca cttctgtgag gcaggcttga gtcccctgca ttgtcatggg tctctaagga
     2101 tatgcagcca tgtacatggt actcatcgtg ggctgagagc tggcctgact tagtgtcaac
     2161 catgacttag gtcatgacca gaaacaagac gcgcctgctt gggtaccact tacaggacct
     2221 gaaacatgct tagccaggcc agaaccaacc cagggaggag gcatgatcct ggtgatggtg
     2281 gtattctaga aacagtgggt gctgctttgc tccgggttcc tgggttccca ctccccacat
     2341 tctgatcttg taagctttga gcttgggttt accaccagcc tttcaggggg actaatactt
     2401 taatgtgagt gcattcgcta ctggttaaga agggaaatta gggaagtcgg ctgtgggttg
     2461 ccagaaaggt agaacttgtt tttcttaaaa tatggaagat tttagaaaat atattaggtc
     2521 acatgattag ggaaaaaata gactagaaaa ggctgtggac ttgattttgc tgactaaaca
     2581 aacccaagta attaaaagat gacttattta taaagtctgc taatgtgttt tgttctgttt
     2641 gggaagaggt gtgagttggt ggaagcctgg tgtcttttgt agtagacata cagtccgaag
     2701 agtttgttgc ctgtaatgtt tcagaatcta ctttgcctat atattcctga gctggtgctg
     2761 tggtgatagg tgttgtctaa cttatgtgca cataagttag agttccgggg ggactgaagg
     2821 taagaaactg gttttctgcc ttaaatactt cttgtttctg taacaaagtg cttggcacat
     2881 agtaggtcca caatttttgt tgacaagtac aatctgcttg gtggaaatga tcacagagtc
     2941 tgaagatcca tgagttctag aaatgagaga gagagagaga gaatatgaat atgagagtca
     3001 aatttttctt ccctgaaaca atcatattat gtaatgattt caaagtgatg aaagcaaggc
     3061 tatttttaca gtttgaaaat atggcagaga atgagaaggt tgacagaacc agctggcttg
     3121 ctctctattt atagaacttg gccacatctg atctagagaa actaaagatt tggggaagct
     3181 gggcttaaat agtggggcaa tgtagaatgt ggttcaagga tcataggcat acaccaggcc
     3241 tctcctgtga actgctccga acaagaggaa gatgtgtgcc tactgtcacc ctcccgctgt
     3301 ggagagctgg gaggaacgtc ttgacagttt atcatgttcc ttgggatagt ctcctttaaa
     3361 tttatttttg catgtatggg tgttttgcca tttttgcctg caggtatgac tacaccacat
     3421 ggtgcctgtg gaggtcagaa gaaggagttg gatcgtctgg gactggcatt acagatgttt
     3481 gtgagctgcc atttgggtgc tgggagctga ttccaggtcc tctggaagag gaatcagtgc
     3541 tcttgggatg gtctcttaac agtgaccatt gagagagcat gaaacatggc cccttaccct
     3601 tgtgtaagca ggagagtcat ggtggagggg taagatatgg gctctaggga ctattttgag
     3661 ggtgggtgtt tgctgctgtt aagctaaatt tagcaagtgt ctagaatgga caggggttct
     3721 ggttcattag agctctgctt gaaggagaga gcttaagcaa atgcgctgat gaccagacgt
     3781 gctcttcaca cacacacacc cgtctacagg ggacaactga gcattggatc attatctaac
     3841 agtctcagag cctacaggga gagagaatgt aatcatcttc cccagtgctc gggctcgtgg
     3901 gctgctcaga ctggaagttg acatcccctt tgtgtacctg ggcagtgaag tgctgccaca
     3961 gagcagaagg cagggctctg ctcagtgacc cgccttacac cttaggcgca cacactgagt
     4021 ctcatgttct ccacggagct gctctatacc ctaactatga gggaagtagg ttccagtgcc
     4081 gagagcatct tgcttgattc tggttgttcc tctggtgtgt ggaatgaaca gttaatagca
     4141 gtcatgtgta tctatcctca gaatgctggg cagcccattt cctgtgtcct agtgattgaa
     4201 cagttccact cccccatccc tccttatgga aaagtacaga ttcaaaacct ggccttaaaa
     4261 ttatgactat ctttggcata caaacttgct tggtgtacat gtgtgtatgg ggagcgggag
     4321 tcttaaagcc tttgtgtgtg ctacatttat ttatgtgtgt gtgtacatgt gtgccacttg
     4381 gtgtatgtga aggtcagagg acaactttaa ggagtttgtt ctctcctttc acggtgtggg
     4441 tccttgagac ttgaattcag gtcatcagtg gtggcagcaa gccccttgac ccactgagcc
     4501 atcttgccag cccgtttctt ttgttttcga gatgtagttt tgccacacag gccttcagtg
     4561 ttcagtcctc ttacctcagg ctcttgagag ctcgggtggc aagtgtacta cgcccgtgca
     4621 tgctcaccca ccaagaagct gggcagcaga cactccagct cagcttgcta accaggagcc
     4681 tctctgctgt ccttgggaaa gaagtggcca tcagatggct ttaatgctac ggaggtgtga
     4741 gctcactgat gtccaggatc tgtgctttat aaagataaca gtgttggtgg gaagaaacat
     4801 agatttaacc tgaatttaag gacttggact gcattaatga cactccctag gaaacctcca
     4861 gacactcatc attagcaaag ttcagttgct tcaacttgac tttgaaccct gctaaggctg
     4921 aaccagcctc atgacctgtg actcttggtg ccggcatcgg agcgagcatg acggaggagt
     4981 cggtcttgag gatgatgttt cttttctcct ggagctcaga cttcagttca gaggggagta
     5041 agaggcaagc aagacaaggt cacgtgacag aaggccaagc agaatgggaa gaaagttacc
     5101 accagcttac accacagctg tttccaaatg cgagcccaac tcagaacagg ccctacccca
     5161 tatctgataa agttggtgta tggtgggacc tgaaaagcca catttgtacc atcctgggtg
     5221 atactgacac tcctggggtg tgctttgaga atcccgggga agtaatgctg gagtccagat
     5281 aaaagcaata aagagttcat gcacacaggt
//
