LOCUS       NM_001033532            5357 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus expressed sequence AW554918 (AW554918), transcript
            variant 1, mRNA.
ACCESSION   NM_001033532 XM_128912 XM_889977 XM_898748
VERSION     NM_001033532.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5357)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124355.3, AC125104.3 and AC144938.3.
            
            On Apr 25, 2022 this sequence version replaced NM_001033532.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.19889.1,
                                           SRR9219380.57099.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                AC124355.3         34021-34093
            74-109              AC124355.3         39694-39729
            110-252             AC124355.3         40350-40492
            253-347             AC124355.3         47062-47156
            348-463             AC124355.3         68868-68983
            464-591             AC124355.3         154946-155073
            592-1262            AC125104.3         53240-53910
            1263-1361           AC125104.3         58390-58488
            1362-1543           AC125104.3         113452-113633
            1544-1652           AC125104.3         133493-133601
            1653-5357           AC144938.3         28454-32158
FEATURES             Location/Qualifiers
     source          1..5357
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 13.74 cM"
     gene            1..5357
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /note="expressed sequence AW554918"
                     /db_xref="GeneID:225289"
                     /db_xref="MGI:MGI:2147376"
     exon            1..73
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..1857
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein hinderin"
                     /codon_start=1
                     /product="protein hinderin isoform 1"
                     /protein_id="NP_001028704.2"
                     /db_xref="GeneID:225289"
                     /db_xref="MGI:MGI:2147376"
                     /translation="MAGAAGPFLPGSAFWSRDFSDEDQSVAYVPGISTEGNTRSRVKL
                     INPKVDVKVKASRVTDASVSMESLKGAGDSVAEQNFCKRGMKSASLKDLCLEDKRRIA
                     NLIKELARVSEEKEVTEERLKTEQESFEKKIRQLEEQNELIIKEREALQLQYRECQEL
                     LSLYQKYLSEQQEKLTLSLSELGAARAQEQQITKKKNTPQCSLMDLDGSFLSVARPQN
                     YGQTKARPKSANQVSESFTELRNNSLRPITLHHPKEDLERMSTKTRTCTYESLGRRLI
                     NAAPIEKSLPVELKIKEYPNLPPTPSSQYCGHKCSESGAYVHENYHPTNMAPQCCKTH
                     PESCSHCRIPWASQMHDRVILQPRETDIEKQLSEDRRQQLMLQKMELEIEKERLQHLL
                     AQQETKLLLKQQQLHQSRLDYNWLRTQAMFKSRELVADKEFPKPDLDMNGSVSGPSLW
                     KPKCDGWMRGTSTSFKKCPDSPNSGQNQREKKTVEFQSRVENGIQWTCQQNDICRPQR
                     ETVTGVRKDASTSPMSTRSPKEPLTPASLSSQHKTSRYETSLLDLVQSLSPNSAPKSQ
                     PHPSRAAGTWSTLRPTPQKSIWKKVGTRRSPEDLEENQILEDIFFI"
     exon            74..109
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            110..252
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            253..347
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            348..463
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            464..591
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            592..1262
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            1263..1361
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1543
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            1544..1652
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     exon            1653..5357
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5332..5337
                     /regulatory_class="polyA_signal_sequence"
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /note="hexamer: AATAAA"
     polyA_site      5357
                     /gene="AW554918"
                     /gene_synonym="4921538P22; Kiaa1328; mKIAA1328"
                     /note="major polyA site"
ORIGIN      
        1 agtggcggtt gtttcaagat ggcgggcgcg gcgggcccct tcctgccggg ctccgcgttc
       61 tggagccgcg acttttctga tgaagaccag tcggtggctt acgttccagg aatctccaca
      121 gaaggaaata caagatcaag agtcaagttg ataaatccaa aagttgatgt taaagttaag
      181 gcttccaggg tgactgatgc ttccgtctcc atggagtctt taaaaggtgc tggagattca
      241 gtagccgaac agaatttctg caagagagga atgaagagtg catcattgaa agatttatgc
      301 cttgaagaca aaagacgaat tgccaactta attaaagaac tggccagagt aagtgaagaa
      361 aaggaggtga cagaggagcg gctgaaaact gagcaggagt cctttgagaa gaagatccgg
      421 cagttagagg agcagaatga actgatcatc aaagaaaggg aagctcttca gctacagtat
      481 agagaatgcc aagaacttct aagtctctac cagaagtacc tatcggagca gcaagagaag
      541 cttaccctgt ccctctcaga gcttggagct gctagagcgc aggagcagca gataaccaag
      601 aagaaaaaca ctccccagtg ttcattgatg gacctggatg gttcctttct gagtgtagcc
      661 agaccacaaa actacggtca gaccaaggcg aggcctaagt cagcaaacca ggtctcagaa
      721 tcgtttacag aattaaggaa taattccttg aggccaataa cacttcatca tcccaaagaa
      781 gatttagaga ggatgtcaac aaaaaccaga acatgtactt atgaatctct ggggagaaga
      841 ctaataaatg cagccccaat agagaaatct ctcccagtag agttgaagat aaaggaatac
      901 ccaaaccttc cacctactcc atctagtcag tactgtggtc ataaatgctc tgaaagtgga
      961 gcttatgttc atgagaacta tcaccctaca aacatggccc ctcaatgttg taagacacat
     1021 ccagaatcat gcagtcattg taggattccc tgggcatctc aaatgcatga tcgagtgata
     1081 ctgcaacccc gagaaactga cattgaaaaa caactctcag aagatcgaag gcaacagctg
     1141 atgcttcaga aaatggaact ggaaattgaa aaggaacgcc ttcagcatct cctggcccaa
     1201 caagagacga agcttctcct taaacagcag cagctgcacc aatcccgact agattacaat
     1261 tggttaagaa ctcaagctat gtttaaatct cgagagctgg ttgccgataa agagtttcct
     1321 aaacctgatc tggatatgaa tgggagtgtc tctggaccaa gcttatggaa gccaaaatgt
     1381 gatggatgga tgcgtggaac ctcaacatcc tttaaaaagt gcccagactc tccaaacagt
     1441 gggcaaaacc agagggagaa gaaaactgtt gagtttcagt cacgtgtgga gaatggtatc
     1501 caatggacat gtcaacagaa tgatatatgc agaccccaga gagagacagt aacaggagtt
     1561 agaaaagatg catccacatc ccctatgtca acacgaagcc ctaaagaacc cctgacgccc
     1621 gcctcattat catcccagca caaaacctca aggtatgaga catctctttt ggatttggtt
     1681 caatctctga gcccaaattc tgctcccaaa tctcagcccc atccctccag agcagcaggg
     1741 acatggagta ctctccgacc tacccctcag aaatctatct ggaagaaagt ggggacccgt
     1801 aggagccccg aagatctgga ggagaatcag attctggaag acatattttt catatgactc
     1861 tgaagcacat actacagaat ttccacagga aatatttggg ttcctttcca tattgatgta
     1921 ggatgttaaa ttggaaagta gccaagtctc tcctttcatg gagacctctt gctggcaccc
     1981 ttttatggta ttgaatatag aaaccattct aataaatcag ggtggttttt tgtcagacca
     2041 gtcagcagaa aggaggtcgc ctaggggtag gatcttttct ataccaaaca gaaattggaa
     2101 atttaggata ctttctgtgt ggcagactcc atgaatgtct agtgtcgttt ttaagagtgt
     2161 tttcaattta ctactgcaaa aagttgactc tttacagaag gaaaaacttt cccattgaca
     2221 gacctcttaa atatgaaaga gaccacttca gaaaggcact tctttcctca ctaacgctaa
     2281 atgtggctct tcattctgaa attgaagttg atgaccctag tatcatctta catgggacca
     2341 atacttgtgg gtcatagtga tcatcaacct ggtcattgcc accccttaaa ccaaaaggct
     2401 tagtgactta gagggaagtt cccaaccaga gagtggcatt aaactaacca catgtgggaa
     2461 tggctgcctg gggaaattta ccagtatcca ggcaaccacc tctctagtgt cccatggtgg
     2521 atgttttttg ttgacctcaa tgtcggtggt tcttgtacaa tctgtggttg tgtctgagga
     2581 agatggcact agagagagag tggtatcaag aggctgcagg ttggcaggct ccttctgccc
     2641 ccacctcacg gcataaggat gaatagtcct actctgagca cccatggatg cactgagtct
     2701 aagtaagctc tgctgattat ccttgaccca gatctaaatc ttttctcttc aggctgagct
     2761 cagtcctttt gagtctactc aggctcccct ccctttgagc ctccctatct catactcttc
     2821 ctctgaggca aatgcaaggg caggactaat tacttgtagt cattcccttt ggaaatggaa
     2881 agttcattgc agattccaat ttccttttca aagtcaccct gagaataact agaacaggct
     2941 tattccactt caaagcacct ttaggatatg actttggagt ggtagaaatg gccattttct
     3001 cagttgcatt tccagaaaca tcttttctct atcttgtgtg tcaaagacag cttaacaata
     3061 cctatttctt tagacctgct ataactatag tcgctgtttg agcatcaata gtctcactac
     3121 tccattatgt ctccaaaggg aaaagaaaga gaatcagatc tctttaagaa gatcatttac
     3181 ctgtagaaga gttataaaca gcctaaacac taaagctttt ttgcagtggc atgccagtga
     3241 atagaattta attgcttttt caccagcatg ggaagtttgg aagagaaaaa aagaattttc
     3301 aggggagcat cagtcagcac acttttcata cttcatggcc ctaccagttg ccttctttct
     3361 cctgcaggca tttctatgtg cacacacaca tacacacaca caaatgtaaa acctagtgac
     3421 tttgttattg agtgaatggt atatgttaac attttaatct gtattaaatt tcctttgaga
     3481 tagatgtgtt gttgtagagt attggggttt gaactgatgg tagcctatcc cacagaagga
     3541 tgggaagaaa ggagaagcca tggggctccc ctgataatgc tctcttcagt agttggttgg
     3601 gacttctttg gccagcccct agatgtttct tcaaagcaaa actgcactca ataatgaaaa
     3661 tttggtttaa caagattcac caaggtcacc agataggagc agttcaaacc cagaggagga
     3721 tgtgggggtc attgttcttt tctttatttc tctttcctat tttgagtcaa tgtccaaact
     3781 ctcagaaact cttttctact gtccagtcat tatttatcag ccacatggat tggtagcaca
     3841 cgagagcagt gggaaaaagg aaggaaagga accatgccta attctatttg cagccttggc
     3901 acgcagctct ctcataaagg agaaaaagag ggccagaaga gagaactgga gatggtgggc
     3961 catgggacac ttctgctgct ccctccacag tcccttatct gcaatggctg acattttctt
     4021 ccagacttaa gatttctaac tcccctactg aaaactgcac tccccagggc tcacaggaca
     4081 aggggcacag ccctagagaa gctctctgtc tctggcccca tgtccttctg ctgcatcatc
     4141 tgcccctatt accttgtctc ctttgctccc cattgtgact tgctactgtt agacatgtcc
     4201 caatgacaca cttctctttc caggtccttc agggtgaata acttgagact aagttgttac
     4261 cacttggtga aattttcctt atgtacttgg cactgtgtac tgctggctct aggaagattt
     4321 gcagatatgc ccaaccatag cctatgggcc acatatggtc aaggatagct gtgaatgtgg
     4381 cctaacacaa aattgtaaat ttacttaaaa ctttttgagt tgtgttgttg ttatttttat
     4441 ttttcacttt tttgtgtgta acttgattgt gcagctctca aacatgaata ttgtatataa
     4501 taaatcatgt catcatgttg cagtatcaaa agactggcca tgtggcaagt ccaaagcctc
     4561 tgttatggcc tcctcattat gacacattgt actgggtact tttgtctttc ttattagagt
     4621 tccaggtagc cagactaaca tgtgctatgt tggagaagcc aacttcacca tttgcaacat
     4681 acagatatgc aggtgagtta ctgatagctt ctgagaatga taactctacc tgcagatttt
     4741 aggcctgacc tgataaccta gccctaaaca cctagaccag agaaaaccca gaatgggaaa
     4801 gtcaaagttc ccaagaacgt gaagctggca gttggagggc atagagacac atctcctttg
     4861 aacatggagc aaccaatagc ccaaaggcag gaagcagtgt tagtgttaga gaagtacaga
     4921 ggtggttggc cagacagcct cattccagag ctgacaccca ctcccctcct ctgtagtctg
     4981 atacctgatt ggctgacacc aagctagcac tagcatacac agttgctcgc agtggactcc
     5041 cacccaaagc tccctctttc ttttccccag gtgctgccca ccctcccctc cacacccttt
     5101 tcagctttag gtcctgaggt ggccaggagg ctgctgagat gagggagacc atgtgtgtcc
     5161 cagtgagatt aggtgagccc ccagtttttc agacctactc tgagatttta acctgttggg
     5221 cttatgtagc attgggaaat ggtaaactgt ataaattttc tgtattttcc acggacagtt
     5281 atttatggag gggcgttttt aactcaagtg ctagaaatgt taaatcatca taataaattc
     5341 atgctattca gactttc
//
