LOCUS       XM_017319894            4371 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus expressed sequence AU040320 (AU040320),
            transcript variant X1, mRNA.
ACCESSION   XM_017319894
VERSION     XM_017319894.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_017319894.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4371
                     /gene="AU040320"
                     /gene_synonym="A730047D20Rik; AAVR; Kiaa0319l"
                     /note="expressed sequence AU040320; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     mRNAs, 55 ESTs, 795 long SRA reads, 17 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 36 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100317"
                     /db_xref="MGI:MGI:2140475"
     CDS             242..3388
                     /gene="AU040320"
                     /gene_synonym="A730047D20Rik; AAVR; Kiaa0319l"
                     /codon_start=1
                     /product="dyslexia-associated protein KIAA0319-like
                     protein isoform X1"
                     /protein_id="XP_017175383.1"
                     /db_xref="GeneID:100317"
                     /db_xref="MGI:MGI:2140475"
                     /translation="MEKRLGVKPSPASWVLPGYCWQTSVKLPRSLYLLYSFFCFSVLW
                     LSTDADESRCQQGKTLYGAGLRTEGENHLRLLAGSLPFHACRAACCRDSACHALWWLE
                     GMCFQADCSKPQSCQPFRTDSSNSMLIIFQKSQTTDDLGLLPEDDEPHLLRLGWGRTS
                     WRRQSLLGAPLTLSVPSSHHQSLLRDRQKRDLSVVPTHGAMQHSKVNHSEEAGALSPT
                     SAEVRKTITVAGSFTSNHTTQTPEWPKNVSIHPEPSEHSSPVSGTPQVKSTEHSPTDA
                     PLPVAPSYSYATPTPQASSQSTSAPHPVVKELVVSAGKSVQITLPKNEVQLNAFVLPE
                     AEPGETYTYDWQLITHPTDYSGEVERKHSQSLQLSKLTPGLYEFKVTVDGQNAHGEGY
                     VNVTVKPEPRKNRPPVAVVSPQFQEISLPTTSTIIDGSQSTDDDKIVQYHWEELKGPL
                     REEKISEDTAILKLSKLVPGNYTFSLTVVDSDGATNSTTASLTVNKAVDYPPVANAGP
                     NQVITLPQNSITLFGNQSTDDHGITSYEWSLSPSSKGKVVEMQGVRTPALQLSAMQEG
                     DYTYQLTVTDTAGQQATAQVTVIVQPENNKPPQADAGPDKELTLPVDSTTLDGSKSTD
                     DQRVVSYLWEQSRGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNV
                     IVKEEINKPPVAKIAGNVVVTLPTSTAELDGSRSSDDKGIVSYLWTRDETSPAAGEVL
                     NHSDHHPVLFLSNLVEGTYTFHLKVTDAKGESDTDRTTVEVKPDPRKSNLVEIILDVN
                     VSQLTERLKGMLIRQIGVLLGVLDSDIIVQKIQPYTEQSTKMLFFVQNDPPHQLFKGH
                     EVAAMLKSELQKQKADFLIFRALEISTVTCQLNCSDHGHCDSFTKRCVCDPFWMENFI
                     KVQLRDGDSNCEWSVLYVIIASFVIVVALGILSWTTICCCKRQKGKPKRKSRYKILDA
                     TDQESLELKPTSRAGSKQKGPTLSSSLMHSESELDSDDAIFTWPDREKGKLLYGQNGS
                     VPNGQTPLKSRSAREEIL"
ORIGIN      
        1 gggcaattgc ccgagtctgg ggcctgagtg ctcgagctaa ggaggaaagg tgcgggccgc
       61 cccgcaaggg ctcgcggcca aaggctgagg gcccggacgt cctcgcttgt gcgtagctct
      121 cccctcagcg ccgcccctcc tcccactttt gggctcgcgg ctggaattgc gcttccggag
      181 ggtgggggca ggaggactgg ctcagcgtga agatgtactg gttccgcctc tctggaaggc
      241 catggagaag agactgggag tcaagccaag tcccgcttcc tgggttttgc caggatattg
      301 ttggcagaca tcagtgaagc tgccgagaag cctgtacctg ctttacagtt tcttctgctt
      361 cagcgttctg tggttgtcaa cagatgctga tgagagcaga tgccaacagg ggaagacact
      421 ttatggagct ggcttgagaa ctgagggaga aaatcacctc cggcttcttg caggaagcct
      481 gcctttccac gcctgtcggg ctgcctgctg ccgggactct gcctgccacg ctctatggtg
      541 gctggaaggg atgtgctttc aggctgactg cagtaagccc cagagctgcc agccttttag
      601 gacagactct tccaattcca tgctgatcat ttttcaaaaa tcccaaacta cagatgattt
      661 gggccttctg cctgaagatg atgaaccaca tcttctgagg ctaggctggg gcaggacatc
      721 gtggaggagg cagagccttc ttggggctcc cctcaccctt tctgtaccct ctagtcacca
      781 ccagagctta ctcagggatc ggcagaagag agatctcagt gtggtaccta cacatggagc
      841 gatgcagcat tctaaagtga atcactcgga ggaagcaggt gctctgagtc ccacctctgc
      901 agaggtccgc aaaaccatta cagttgccgg ttccttcacc agtaaccaca ctacacagac
      961 tcctgagtgg cccaagaatg tgtccatcca tcctgaacca tccgagcact ccagtcctgt
     1021 atctggtact ccgcaagtaa aaagcactga gcacagtcca actgatgccc ctctgccagt
     1081 ggccccctcc tacagctatg ccacccccac gccccaggcc tcttctcaga gcacctcagc
     1141 accacaccca gttgtaaagg agctggtggt gtctgctggg aagagcgtcc agatcaccct
     1201 gcctaagaat gaagttcagt taaatgcctt cgtccttcca gaagcagagc caggagaaac
     1261 ctacacctac gactggcagc tgatcactca tcctacagac tacagtggag aggtggagag
     1321 gaaacattcc cagagcctcc aactgtccaa gctgactcca ggcctgtacg aattcaaggt
     1381 gactgtggat ggccagaatg cccatgggga aggctacgtg aatgtgacag tgaaaccaga
     1441 gccccgtaag aaccggcctc ccgttgctgt ggtgtcacct cagttccagg agatctcgct
     1501 gccaaccact tctaccatca ttgatggcag ccagagcacg gatgacgata aaattgtcca
     1561 gtaccactgg gaagagctta aggggcccct gagagaagag aagatctctg aagacacagc
     1621 catactaaaa cttagtaagc tcgtcccggg gaactacacc ttcagcttaa ctgttgtcga
     1681 ctctgacggg gctaccaact ccaccactgc aagcctgact gtgaacaaag ctgtggacta
     1741 ccctcccgtg gccaatgcag gccccaacca agtgatcacc ctgcctcaga actccatcac
     1801 cctctttgga aaccagagca cggatgacca cggcatcacc agctatgagt ggtcgctcag
     1861 cccgagcagc aaagggaagg tggtggagat gcagggagtt agaacgccag ccctgcagct
     1921 gtccgcaatg caagaaggag actataccta ccagctcaca gtgactgaca ccgcaggaca
     1981 acaggccacc gcccaagtga ctgtgattgt gcagcctgag aacaacaagc ctcctcaggc
     2041 agatgcaggc ccagacaaag agctgaccct gcccgtggac agcacaaccc tggacggcag
     2101 caagagcaca gatgaccaga gagtcgtctc ttacctttgg gagcagagtc ggggacctga
     2161 cggggtgcag ctggagaatg ccaacagcag tgtcgccact gtgactgggc tgcaagtcgg
     2221 gacttatgta ttcaccttga ctgtcaaaga tgagaggaac ctacagagcc agagctccgt
     2281 taatgtcatt gtcaaagaag aaataaacaa accgccagta gccaagatcg ctgggaacgt
     2341 ggtggtgacc ttgcccacga gcacagctga gctggatggc tcgaggtcct cagatgacaa
     2401 ggggatagtc agctacctgt ggactcgaga tgagacgagc ccagccgcag gggaggtgct
     2461 gaatcactct gaccaccacc ctgtcctctt cctctccaac ctggtggagg ggacctacac
     2521 gtttcacctg aaagtgacag atgcaaaggg cgagagcgac acagaccgga cgacagtgga
     2581 agtgaagcct gaccccagga aaagcaacct agtggagatc atcttggatg tgaacgtcag
     2641 tcagctgact gagaggctga aggggatgct catccgccag attggggtcc tcctgggggt
     2701 gctggattcc gacatcattg tgcaaaagat tcagccgtac acggagcaga gcaccaagat
     2761 gttgtttttt gttcagaacg accctcccca ccagctcttc aaaggccatg aggtggcagc
     2821 catgctcaag agcgagctgc agaagcagaa ggctgacttc ctcatcttca gagccctgga
     2881 aatcagcaca gtcacatgtc agctgaactg ttctgaccat ggccactgtg actcattcac
     2941 caagcgctgt gtctgtgacc cgttttggat ggagaatttc atcaaggtgc agctgaggga
     3001 tggagacagc aactgtgaat ggagcgtgct ctacgtcatc attgcctcct ttgtcattgt
     3061 tgttgccttg gggatcctgt catggactac aatctgctgc tgcaagaggc aaaaaggaaa
     3121 acccaagagg aaaagcagat acaagatcct ggatgccaca gatcaggaga gcctggagct
     3181 gaaaccaacc tcccgagcag gcagcaaaca gaaaggcccc acgctgagca gcagcctgat
     3241 gcattctgaa tcggagctgg acagcgacga tgccatcttc acatggccag accgggagaa
     3301 gggcaaacta ctgtatggtc agaatggctc tgtgccaaac gggcaaacac ctttgaagtc
     3361 caggagcgca cgggaggaga tcttgtagcc ccctgatctg tctcaacagt ctgggcctca
     3421 gtgctagggg ccagagcacc tctaggctga ttcctcacct tttgggtctg agggcagctg
     3481 ctctcccagc atgtgctggc cactccatcc caaaagcccc catcagaact gctggtactt
     3541 gaatcctcag atactttata ggagcccttg aatgaagctg tgaatggaga ggttttctct
     3601 ataaacctat gtggtagccc cccccccggc cccccaaatg tcctcatctc agggcctcac
     3661 tttctgcaca cacctccctg cctgagagca gacacaaaca ggcccatagc ctctcctctg
     3721 ctgttagagc aatgcagctg ggcccagaac acccatgatg aggttcactg cgtctaccct
     3781 gcacctcgca cagaaccaag agccaccagc ctcctgatgg caggggccta gccctgggca
     3841 tattcatttg tttgcttctc tgggacagta tgccctgcct tccctgggcc aaaagaaatc
     3901 cgtgctgtca ctgatgctgg cgatgatgca gagctgtcgc tgccctcagc tcctgctggc
     3961 ttgtttatca gggatatggg agctgcgggc atgacagcca cattctccca gaagagacag
     4021 ccacagatag actggaactc tctggcatgt gagtgcatat gtgtgactgc cccactgtgg
     4081 gacctgccac atccctccat ccatgtcttt tctgtgtcct ttgcacgtgt gagtgctcga
     4141 gtgtatgtgc ccattcctca taggtctctt ggctgctctc aaggttaatt ttaacttgga
     4201 gactttcagc tccttgaaag actattaatc cctccagcct gatgaccagt tctcagctgt
     4261 ggtgtggcag ctgaggaatt gggtttcggg gagagtgact ttttaaaaag gacttaattt
     4321 ctactactgc actatctgtt gtgagataat taaacatgct atttaattgt g
//
