LOCUS       NM_001004153            3466 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus expressed sequence AU018091 (AU018091), mRNA.
ACCESSION   NM_001004153 XM_142564
VERSION     NM_001004153.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3466)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC080735.1 and AB201954.1.
            
            On Oct 21, 2009 this sequence version replaced NM_001004153.1.
            
            CCDS Note: This CCDS was updated to extend the coding region at the
            5' end, which extends the N-terminus of the protein by 49aa. The
            update is supported by transcript data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC080735.1, AB201954.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                BC080735.1         9-58
            51-3466             AB201954.1         2-3417
FEATURES             Location/Qualifiers
     source          1..3466
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 1.84 cM"
     gene            1..3466
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /note="expressed sequence AU018091"
                     /db_xref="GeneID:245128"
                     /db_xref="MGI:MGI:2142124"
     exon            1..189
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..2129
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /note="cationic amino acid transporter member 5"
                     /codon_start=1
                     /product="cationic amino acid transporter 5"
                     /protein_id="NP_001004153.2"
                     /db_xref="CCDS:CCDS39724.2"
                     /db_xref="GeneID:245128"
                     /db_xref="MGI:MGI:2142124"
                     /translation="MLWVLPPPTLKNFQLLCSTDLELCPRNTSSTPGFHPVSAEFGSL
                     HQALKMLWQNLHQFGQKLVRRRPLAANEQSESSLSRCLTTLDLVSLGVGSTLGAGVYV
                     LAGEVAREKAGPSIIICFLIAALSSVMSGLCYAEFGARVPCSGSAYLYSYVTVGQLLA
                     FITGWNLILNYVIGAASVARAWSAAFDGLIGNHISQAMQTTFPIQVPSFLAKYPDFFA
                     LGLVIVLTGILALGARESALVTRVFTGVNLLVLCFVSLSGLINGKLHNWQLTEDDYKL
                     ALLESNNTDSLGPMGSGGFMPFGLKGILRGTATCFFAFIGFDCIASTGEEARCPQRSI
                     PLGIVTSLFICFLMYFGVSGALTLMIPYYQININSPLPQAFIHVGWGPARYAVAVGTL
                     CALSSSLIGSIFPVPRVVYSMAEDGLLFRKLAYVHPRTHTPVLATVLCGIIAAFMAFL
                     VELSDLVDLSSIGTLLAYTLVTFSVLILRYQPDQVLSSCKREKSESAAVELEPGLEPS
                     SCMEPISPEGMPGIARTLCIPTNTTPTLRSGRIVYGCASLLVFLLMLLCLILTQWSTQ
                     LFSGDPVLIAMAASLLLLTVGVITVIWRQPQSTTPLHFKVPALPVLPALSIFVNIYLM
                     MQMTSGTWFRFGIWMVIGFAIYFGYGIQHSLEEKNDQQPTASSSQTLQELQEHTPSVD
                     LP"
     exon            190..594
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            595..753
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            754..931
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1044
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1267
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1407
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1510
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1511..1722
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1723..1889
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1890..1998
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
     exon            1999..3449
                     /gene="AU018091"
                     /gene_synonym="cat-5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagatgagct gtcagctgtc cctccctgtt ggtccccacc ctacccgcca ggcacatttc
       61 cggtggctac ttgaatgctg tgggtcctac ctcctcctac cttaaagaat tttcagcttc
      121 tgtgcagcac agatctggag ctctgcccca ggaacacatc cagcactcca ggatttcatc
      181 cagtgtctgc agagtttgga tccctccacc aggcactaaa gatgttatgg cagaacctcc
      241 atcagtttgg ccagaagttg gttcgccggc ggcccctggc ggcaaacgaa cagtctgagt
      301 cttccttgtc tcgatgtctg accactttgg acctggtgtc cttgggtgtg ggcagtaccc
      361 tgggtgcagg cgtgtatgtc ctggccgggg aggtggccag agagaaagct ggaccgtcca
      421 tcatcatctg cttcttaatt gctgccctgt cttcagtgat gtcaggactc tgttatgcgg
      481 agtttggggc cagggtacca tgctcgggtt ccgcatatct ctacagctat gtcacagtgg
      541 gccagctgtt ggctttcatc actggctgga acttaatact caactatgtc attggtgcag
      601 ccagtgtggc tcgggcctgg agtgcagctt ttgatggcct catagggaac catatctccc
      661 aagccatgca gacgactttc cctatccaag tgcccagctt tctggccaag tatccagact
      721 tttttgcgct tggtctggtg atagttctca ctggaatcct cgccctggga gcacgagagt
      781 ctgccctggt caccagggtt ttcacaggag tgaatctttt ggtgctgtgt ttcgtctccc
      841 tctctggcct cattaatggc aagctacaca actggcagct tacagaggat gactacaaac
      901 tggctctgtt agaatccaac aacactgaca gcttgggacc aatgggctct ggagggttca
      961 tgccttttgg cttgaagggg attctccgtg gtacagcaac atgtttcttt gccttcattg
     1021 ggttcgactg tattgcgagt acaggggaag aggcccgctg tccccagcgt tccattccat
     1081 tgggcatcgt gacctcactc ttcatttgct ttctgatgta ttttggtgtt tcgggggcac
     1141 tcactctcat gataccctac taccagatta acatcaacag ccccttgccc caggcattta
     1201 tccacgttgg atgggggcct gctcgctatg cagtagctgt gggaacctta tgtgcccttt
     1261 catccagcct cataggttcc attttccctg tgcctcgggt ggtgtattcc atggcagagg
     1321 atgggctcct gttccggaaa cttgcctatg ttcatcctcg aacacacact ccggtcctag
     1381 ccactgtcct ttgtggaatc atcgcagcat ttatggcttt cctcgttgag ctcagtgatc
     1441 tggtggacct ctcgtccata gggaccctgc tggcctacac cttagtgacc ttctctgttc
     1501 tgatcctcag gtaccagccg gaccaggtct taagctcttg taagagggag aagtctgaga
     1561 gtgcagctgt ggagctggag cctggacttg aaccttcttc atgcatggag cctatttctc
     1621 cagaagggat gccagggatt gcaaggacac tctgtatccc cacgaacacc accccaactc
     1681 tgagatctgg ccggattgtc tatggatgtg cttccctgct cgtctttctt ctgatgctcc
     1741 tgtgcctgat cctgacccag tggtccacac agctattctc tggggaccca gttttgattg
     1801 ccatggctgc ttcactattg cttcttactg tcggagtgat cactgtcatc tggagacagc
     1861 ctcagagcac cactcctctc cacttcaagg ttccagccct gcctgtgctt cctgcactga
     1921 gtatctttgt gaatatctac ctgatgatgc aaatgacttc tgggacctgg tttcgctttg
     1981 gaatctggat ggtgatcgga tttgctatct actttggata tgggatacag cacagcttgg
     2041 aagagaagaa tgaccaacag ccaacagcct caagctccca gactctccag gaactccagg
     2101 aacatactcc cagtgttgac ttaccttaac tggagaaacg ggatgcttcc aggaccccat
     2161 gggcatcagt ttccttccct tcccttccct ttccctttcc tccctctttc ccttccccct
     2221 tttcctttcc tccctctttc ccttcctttt attctctctc tctctctctc tctctctctc
     2281 tctctctctc tctctctctc tctgtgtgtg tgtgtgtgtg gggcgggttg ggaaggcagt
     2341 actgggaatt gaacttagag tcttgtgcgt ctgaggcaaa tgctccatca ctgacctaat
     2401 ctcttgtagg tatctttagg tcaaggaaaa gtttgaatat ttgtgggctg tagatgggac
     2461 ttcttttctt actttctttt tttttcttct tctctttttg ggacttatat cattgtaatt
     2521 ttgtgagcaa attccttaac cttttttttt tttttggtgt gtgtattgaa attggatcca
     2581 tgattttgca tatgctaggc aagtagtact ctaccactga gccacatccc tagtcccttt
     2641 agttatttaa ctgacagcaa aatttaggta tttacatatt atagaatggt taaaaaaact
     2701 gattaatata tgtttctttt tatgtttggg cagttagtct tctatggcta aggtcagact
     2761 tgaacttgat cttctgaaca ttattattta tggagagaga gaaaacacat gtgtcacagt
     2821 gtttgtggag ttcaaaggac aactttatag gttccttctc cctttccact tttcatggat
     2881 tgaactcagg tatttaggct tttgtggcaa cagctttacc cactgaggca tcttgttggc
     2941 ccctgtatcc cctcccccac ccataaacag tatcataact gagaactatc atgaactcat
     3001 gacccttctg tcaccagttc tccaagtgtt ggtattataa gtgtggactg tgcttgttgt
     3061 tgttttttgt tctgtttttc aagacacagg gtttcttgat gtagttctgg ctatccctgt
     3121 aacttactac agtaagttag atcaagctgg ccttgaacac agagatctcc cccatgagtg
     3181 cttagattaa aggcatgtgc cacctctggc ctatcttcat gctcagttac tgtggtgcta
     3241 aacattatgc cagggtttta agcacatttg gacaaccaat ttaccaactg agctacaccc
     3301 cccaacccta tgtttatgtt ttgtgatgaa aacattaaat ttttttaaac attttacaga
     3361 tctatagtgc attgttcatc tgtggcaaca tgtatatgaa cttggaggat gtatattatg
     3421 ttaagtgaaa taaatgaggt ttgaacaaaa aaaaaaaaaa aaaaaa
//
