LOCUS       NM_001286641            5684 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus expressed sequence AI593442 (AI593442), transcript
            variant 1, mRNA.
ACCESSION   NM_001286641
VERSION     NM_001286641.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5684)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5684)
  AUTHORS   Li,M.Z., Wang,J.S., Jiang,D.J., Xiang,C.X., Wang,F.Y., Zhang,K.H.,
            Williams,P.R. and Chen,Z.F.
  TITLE     Molecular mapping of developing dorsal horn-enriched genes by
            microarray and dorsal/ventral subtractive screening
  JOURNAL   Dev Biol 292 (2), 555-564 (2006)
   PUBMED   16516881
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ105950.1, BC109328.2, AK033979.1, CT010440.18 and AK053489.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219381.130215.1,
                                           SRR9219380.2647.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-481               CJ105950.1         2-482
            482-1153            BC109328.2         302-973
            1154-1909           AK033979.1         1103-1858
            1910-1913           CT010440.18        48192-48195         c
            1914-4306           AK053489.1         1-2393
            4307-5684           CT010440.18        44421-45798         c
FEATURES             Location/Qualifiers
     source          1..5684
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 29.12 cM"
     gene            1..5684
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="expressed sequence AI593442"
                     /db_xref="GeneID:330941"
                     /db_xref="MGI:MGI:2143099"
     exon            1..198
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /inference="alignment:Splign:2.1.0"
     exon            199..5684
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /inference="alignment:Splign:2.1.0"
     CDS             441..1040
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="uncharacterized protein C11orf87 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C11orf87 homolog
                     precursor"
                     /protein_id="NP_001273570.1"
                     /db_xref="CCDS:CCDS52795.1"
                     /db_xref="GeneID:330941"
                     /db_xref="MGI:MGI:2143099"
                     /translation="MSARAPKELRLALPPCLLNRTFASHNASGGSSAGLRSSGAGGGT
                     CITQVGQQLFQSFSSTLVLIVLVTLIFCLLVLSLSTFHIHKRRMKKRKMQRAQEEYER
                     DHCSGSHGGGGLPRAGVQAPTHGKETRLERQPRDSAFCTPSNATSSSSSSSSSPGLLC
                     QGPCAPPPPLPAPTPQGAPAASSCLDTPGEGLLQTVVLS"
     regulatory      2415..2420
                     /regulatory_class="polyA_signal_sequence"
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="hexamer: TATAAA"
     polyA_site      2433
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="major polyA site"
     regulatory      2513..2518
                     /regulatory_class="polyA_signal_sequence"
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="hexamer: ATTAAA"
     polyA_site      2537
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="major polyA site"
     regulatory      5653..5658
                     /regulatory_class="polyA_signal_sequence"
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="hexamer: AATAAA"
     polyA_site      5674
                     /gene="AI593442"
                     /gene_synonym="E130102D23"
                     /note="major polyA site"
ORIGIN      
        1 aataggctaa gagctgagct ccccatagca gcagcagcag cagcagcaaa ggcagcggcg
       61 gcggcggcgg cggcggcggt ggcggcggcg agggtggcag cagcagcgcg gctctgtctc
      121 tggtcccagc gctccgtgcc ttctgcagcc gccactgcag ccaagggctc cttctctgca
      181 actggctggt ccttccagca ctgtgcctgg ggaaaggaaa caggatcaaa gaagaccaga
      241 gacactctcc ctggggccac tagctctggc ccgcttgctt ggcggcagtt gctccctcag
      301 tctttggctg gagagctcac tccctccagc gctaaagagc agttggggtg gtgtgggttc
      361 ctgtccacgt cttggctggt gggaaccgtg tgtccaacag aggaagcctg gtgggcctgg
      421 cccctctcag cccagcgccg atgagtgcca gggcgccgaa agagctgagg ctggccctgc
      481 cgccttgtct cctgaaccgg acctttgctt cccacaacgc cagtggaggc agcagcgcag
      541 gtctccgcag ctcaggcgca ggtggtggca cttgcatcac gcaggtggga cagcagctct
      601 tccagtcttt ttcatctacg ctggtgctga ttgtcctggt cactctcatc ttctgtctcc
      661 tcgtgctgtc cctctccact ttccacatcc acaagcgtag gatgaagaag cggaagatgc
      721 agagggctca ggaagaatat gagcgagatc attgcagcgg cagccacggt ggtggggggc
      781 tgcctcgggc aggtgttcaa gctccaaccc atggaaaaga aacccgactg gagaggcagc
      841 cccgggactc cgctttctgc accccctcca atgctacttc ttcttcctcc tcctcctcct
      901 catcccctgg tctcctgtgc cagggtccct gtgcgcctcc gcctccactg ccagccccca
      961 ctccacaagg agcacccgca gcttcctcct gcttggacac acctggcgag ggccttttgc
     1021 aaacggtggt actgtcctga ttgcgcagcc cctctcctga ccctttcctc gtctccagca
     1081 tcttgaccgt cctcgctttt gttcctcctt ccttcctttt ccgttctcct ttggcccctg
     1141 ttttctctgc cctctttcct tacctggcca ccctttcact gtctctcctc cgccgaggca
     1201 ctgtgcggta tttgtaaata ttgggcgagg aaagtctcag aggaagaaat aacgctgata
     1261 atactttact gatatttata gtaattatta tactactaat aacacagtcc aagcgcatga
     1321 caaatcacat aatttctcat tgttaatgaa ggctgcatct tccctcccca ccccgtgccc
     1381 ccctcaataa ggagaagaaa ccgcacaagc taccaaatat ttaagacatt gacaccgaag
     1441 caaagggatg ggagggggcc ggtgatgttg tatatagctg tcaagtgaag gtttagtcgc
     1501 ctttctgccc ctccctcacg ggctttcact tttcctttag cttgtctccc ctcccctttc
     1561 ctcaccttca gctgggctca ggcaatagta tattataaag gcaacatcta cattaagcac
     1621 cagagaccac atagaatgtc ccagaaaaac gtttaggaca ggtaacccct ctctagtcag
     1681 tcatcatttc actttttgct ttccccctgg cagaattaga gttttacttt tagaaatatc
     1741 actcgctggt cgagcacaga aaaagaaaac aaaaaacaaa aacatactat ctgatttgct
     1801 gctcattagg gcccatttgt acacctgact ggtagtcgtt ttggtttggt ttgtttgttt
     1861 ggtttttttt ttttcccttt ggggaatttt tttttttttt tttttttttt tttgagcctc
     1921 agagaaaccg ggagctgtcc agccaggtct ggtgctgaat atgtctcacc ttcatggtta
     1981 cttcctctgg ttgtgcagac caaagaagga gctgttttgg aaagtgattg tcttggtttt
     2041 gattggtttc tttcttcttt tttctacaat tggattgttt tttcttatca ctatacattg
     2101 cataagttac ctttatgtaa aaaaaaaaag tattaggcaa tgtgcagttc tgaaaatgca
     2161 gtatctaacc aactagtatg tttctgtttt atttttagaa caagtgcacc tttgttatat
     2221 acttattata ttggtaccaa atacagaaga aaactatagt tctgtgatat gtcctccaaa
     2281 ctgtatattt ttgttcttct gactttccag ctgttgatat aatggttgcc actggctgag
     2341 gaagtcagtg gtgtaggcct ggcttctgct gtttccggaa gtgttctttt gtattttacg
     2401 ctgtagtaga ctattataaa acgatgacac ccatgtttcc ccctttttct tttgtgaata
     2461 acagaaacaa ccacaacaga aaacaaataa tggatgtgct ggaatgccat ctattaaaaa
     2521 catggttaat atttaaacag tgcctgtggt tctctgcatg cagttgccac ctggaggcag
     2581 tgctgtgtgt gcttgcttgt actgtatgtg tttgggggaa agactggtgg agatgttggg
     2641 caatttggat gacaggacat gacaatttcc aagttaaatc tgtaaacgct tacaggataa
     2701 aactgtttac agcttgttta gttatgactc catgcctgca tctgatatac agcaaagggg
     2761 atctttcttc ttcccaagtc tggcctaatt aacctccctg aacacatagg aaatgttaag
     2821 ggaaaaggaa agcatgagag aagataaatc tcttgtcctc tctttaaatg tcagataagt
     2881 ccctctatgt tagactctgc tgtttagtga agggcagtgg gacccctaca tatatccatc
     2941 tcccaagcca ctagctcccc tctatgctct gtcttatttc aagttgtatg tggttattat
     3001 cccgagaaat gattgcctct aatgttttgg ttacatataa agttttccaa gctcagtctg
     3061 tatctttata aaataattta ataaggttga tttagtcacc catagatatc atccaagtcc
     3121 tttctgaagc acagaagacc atcgtttaag catgccatgt tgtatcatta ggaagatcag
     3181 gtataatctt tggatacaat atattaaaca atgaaccaga ttctctccag tgccttagtc
     3241 acttcctagt aacaggtcag agtgcattca gtccctcggg ccaccaagga tgctgttagt
     3301 gtatcagagc tctacactgt acaacagaat ggctaaggca ctgtgaagga gaatatccat
     3361 taatctcttt aacttgccct catccaactg tagctcttaa taccgtctta cagaatgggt
     3421 tttagatgtg aaatctgaat aggatcagga acccagaagg aaggttcatc atttcagtga
     3481 gctctacata agtgcataga tattactttt ttccattatt tggtgcactc tttttacagt
     3541 aaataatttc ccattttatt aaagcaataa gatattctgt tttgagcagc gctagatgct
     3601 cattccactt ccttggtgct gaagcaactc atatgttctt gccttatgaa tcacagtgca
     3661 ttcaaggcat gcaataataa tccccttcca agaagcagcc tgcacaccct agggggcaat
     3721 gtcctacata cttttcccca aaagaaatag agcaaacaag aaataaacta attatgtgta
     3781 ttttaaaaaa aacatcttga tacctctaac cataagcaca catctgtaat gtgctatcat
     3841 tgtgcacctt taagtgtata tgccttttcc atcaattgac tagggattaa tattttaata
     3901 gtgtcctgtg taaagatgat gcagcttatc aatcacattt catactgagt ttaatatgct
     3961 gtgaacctgg tggcaccaca caagatttct gttagttaga gtgataatta catgaaattc
     4021 tagtaggcca gatcccacac caaattattg taataaagat acgacaatgc aaatttctat
     4081 agagtctgct tagattgcta cttagagagc gcaactgacc catatgacat tcgagttttc
     4141 atttttatga gacaaaaggc attatgaaaa tagctaaatt tactctaagg atcttgttta
     4201 ctgatgtccc gtcaaactaa ttgctccaac cttctatagc tacagctcag ctcctgcact
     4261 tgctattcag tattaataaa gtagcatgct tgattcttac tattttaaaa atgagaaaaa
     4321 tagagagaga atgccgatat gtcaactata tgggactctg actcttgaag atgaagatgg
     4381 atataatctt tagaatttat atacacccat agatatgtat ttatatatgc atacattttg
     4441 tacaaattta caatggactt tttgtattct cttttctgtc attataagta tgagactgaa
     4501 accaaatagt tgttccatcc tctgatccag agaggatctg aggagtcagg tgtatgcatg
     4561 tacttggttc tctgaggtca aatcagaatg gctttctctt tatttagtgg aaggggagag
     4621 tcttccttgg cttggggaat tggtaattag ataagcttcc tttcctatat tagtgactca
     4681 aatgtagcaa tgataacgaa gtcatgacca tctctatgtg gtccagctat ttgatggatc
     4741 aaaaatctat ctacacgagc attggagcca tctagaccac aatcatggat tgcaatctga
     4801 tttttcctct tcactttcaa cttacatgtt gtatgagata caacatatac ctgcatagct
     4861 aaaggtaaaa tgaaaatata cctactattt gtttagtttg aagagtagct ttttggaaaa
     4921 tatggacaat ttagctttaa aaattactgg gcatttgact ttttaaccct ccctatctgt
     4981 aaccattgaa ttgattagat actgactaaa atttcttttt ccaatgcata ggcatagatt
     5041 ttaagtgctt ttaatggata attgctaaga aatgactaac tagtattaca tgagagttat
     5101 gggctaaatt ggaaccagaa actttaatat ggcttctaaa attcactccc atggaagtct
     5161 aggctttgga ctcgaatctg aaaagccact tattcatgtt tggaaattgt ggtgtggtcc
     5221 atagatgttc atgtaagaac ggattgcccc atctacacag gaaggtattt catcactggg
     5281 ctgaatataa atctgattct ggtttagttt ttccttattt gataacattt tggaagcaga
     5341 cgtgatggct tcacatcaat acttatcaat gtcaccagcc caatggtgca attggtgcag
     5401 tgtcagaatg cttagtggag aataagaact tacttagctt taattgagag acagtgcatt
     5461 attcgggttg ctttacccat ttgaggaagg atatttcact gagacttgtg gtctcacagg
     5521 attgctgcta cagagaggat aacgacagtg atggcatcaa cagaagaagt gatttttgaa
     5581 ctcgagtata tccaatagat agaataaaac aggtattaga aattcatgaa aaatttgttt
     5641 tgcttttata tcaataaaag agttttcttg ttaattggcc tttg
//
