LOCUS       NM_178901               1918 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus expressed sequence AI467606 (AI467606), mRNA.
ACCESSION   NM_178901
VERSION     NM_178901.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Voisinne,G., Kersse,K., Chaoui,K., Lu,L., Chaix,J., Zhang,L.,
            Goncalves Menoita,M., Girard,L., Ounoughene,Y., Wang,H.,
            Burlet-Schiltz,O., Luche,H., Fiore,F., Malissen,M., Gonzalez de
            Peredo,A., Liang,Y., Roncagalli,R. and Malissen,B.
  TITLE     Quantitative interactomics in primary T cells unveils TCR signal
            diversification extent and dynamics
  JOURNAL   Nat Immunol 20 (11), 1530-1541 (2019)
   PUBMED   31591574
REFERENCE   3  (bases 1 to 1918)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 1918)
  AUTHORS   Ferreras,C., Lancrin,C., Lie-A-Ling,M., Kouskoff,V. and Lacaud,G.
  TITLE     Identification and characterization of a novel transcriptional
            target of RUNX1/AML1 at the onset of hematopoietic development
  JOURNAL   Blood 118 (3), 594-597 (2011)
   PUBMED   21498670
  REMARK    GeneRIF: these findings indicate that AI467606 is a novel
            transcriptional target of RUNX1/AML1 at the onset of hematopoietic
            development that is extensively expressed within the hematopoietic
            system
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK052739.1.
            
            On Apr 6, 2007 this sequence version replaced NM_178901.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK052739.1, AK155213.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1918              AK052739.1         2-1919
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.32 cM"
     gene            1..1918
                     /gene="AI467606"
                     /note="expressed sequence AI467606"
                     /db_xref="GeneID:101602"
                     /db_xref="MGI:MGI:2141979"
     exon            1..37
                     /gene="AI467606"
                     /inference="alignment:Splign:2.1.0"
     exon            38..1918
                     /gene="AI467606"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..801
                     /gene="AI467606"
                     /codon_start=1
                     /product="transmembrane protein C16orf54 homolog"
                     /protein_id="NP_849232.1"
                     /db_xref="CCDS:CCDS21857.1"
                     /db_xref="GeneID:101602"
                     /db_xref="MGI:MGI:2141979"
                     /translation="MPVTPQQPSGHTEGLPEPTAEAAVWVVIPCGPCIPIMLGLASLT
                     AFFIITTAVLAERLFRRPQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYGSSMP
                     LLMDRAPGPPTPGGTLEGRATAPPATSAPYSSLSSLVPQTPPEVPAQSTFWRPQTQEE
                     RPHDTSLVSWVGSEPMPEAGLQVGSPRPWRPRQGSLEPDWGLQPRVTLEQISAFWKRE
                     GRTSVGF"
     regulatory      1834..1839
                     /regulatory_class="polyA_signal_sequence"
                     /gene="AI467606"
                     /note="hexamer: AATAAA"
     polyA_site      1855
                     /gene="AI467606"
                     /note="major polyA site"
ORIGIN      
        1 gaaaacggcg aaatccaaga ttgaagcaag gtgacaggaa acgggatatc ctctggttgc
       61 tgtcctttcc ttctcccagt ggagacgttc ctgactgttc tgagtccaca ctgagtctcc
      121 cagatgccag tgacgcctca gcagccctct gggcacacgg aggggctccc tgagcctaca
      181 gcggaggcag cagtgtgggt agtaatcccc tgtggacctt gtattcccat catgctgggc
      241 ctggcctctc tcacagcctt cttcatcata actactgctg tactggccga acgcctgttc
      301 cgccgcccgc aaccagaccc cagccagcgt gcccccaccc tagtctggcg ccctggagga
      361 gaactgtgga ttgagcccac gagcagcgcc cgggagcgct ctgaggattg gtacggctcc
      421 tccatgcctc tgctgatgga cagggctcca ggtcccccaa cacccggtgg caccttagag
      481 ggcagagcaa ctgctccacc agccacttca gccccatact cttccctcag ttctctagtt
      541 cctcagaccc caccagaagt cccagcccag agcaccttct ggaggcctca gacccaagag
      601 gagaggcccc atgacacaag cctggtgagc tgggttgggt ctgagcccat gccagaggct
      661 ggcttgcagg ttgggagccc caggccttgg aggccgaggc aagggagcct ggaacctgat
      721 tggggtctcc agcctcgggt caccctggag cagatctcag cattctggaa gagggaaggc
      781 cggaccagcg tgggcttctg agtcttcagg acctgtaaga ctaactccca cctcagaggg
      841 actacagggg tcagctccag ccttaggcct gacccttgcg ctggaaattt tgtgtggaaa
      901 tttctgtctt ctgcacctgg ctggtgggca ggctaagagt gtggacagcc tgcactccaa
      961 ggcttgcctg aagttcagct taggttaaaa tgcctaagtc gtgactctga gaattgaagg
     1021 caagtctagc tggctacagg ccagaaggct tcaagatggc acgtcagggt acaaacttac
     1081 ctaagacagc ctatcctgta tgggatgctg accatcagcc cagagctggt agttatgagt
     1141 gtcagtcatg tggtctggag atggcaagaa tcttgctctc cagagccaca aaccctatct
     1201 gtgcctggcc actctctccc accactgtga ggccctccag gaaaacacag aggacaaatc
     1261 caggaggtgt ctttgattcc gtacaaataa tggccttggc cactaaacag caacatggga
     1321 tttgatgggc cacactggag aggctgtcct tgcctggaat tgggacacag aaccaaaaca
     1381 gatcagtagg ctcctctgcc ccctgactta tggctgcaca catcctacag tacagtttta
     1441 ttattctgtg ttaagacaag catggcctat cgagaactga gtttgttcca atatgggaat
     1501 gaagattttt tcccagagaa aggtcactcc ccaaacatag cctctgccat ctttccctcc
     1561 agcttgctgg agtggtctag agaggcaggt ttgctgtggg gcagacttac ttacagtgat
     1621 ccataccata gaaacggagt cccgaatacc cgtgtgccca ccagctgaca acttctttag
     1681 gagaggggtt cgcagtgggg aagatggagc tttcggcatc tggaaatctg actttccaaa
     1741 cttcagtcaa gagtatgacg atcctgccgt atgtttactt tttgtttcat tatttacttt
     1801 atatttttac ttaaatcggt tcactgtatg cttaataaat ttgttttaaa gtgaatcctt
     1861 tttgtatgac ctctgtaagt gggaaatcag tatttccagt attacttgcc acaagttc
//
