LOCUS       NM_001160369            2805 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA A830018L16 gene (A830018L16Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001160369
VERSION     NM_001160369.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2805)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK081622.1, AK034391.1, AC140778.15 and AW456259.1.
            
            On Sep 23, 2010 this sequence version replaced NM_001160369.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC145022.1, ERR3363660.1691921.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-307               AK081622.1         2-308
            308-1311            AK034391.1         304-1307
            1312-1447           AC140778.15        68824-68959         c
            1448-2378           AK034391.1         1435-2365
            2379-2805           AW456259.1         1-427               c
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 2.57 cM"
     gene            1..2805
                     /gene="A830018L16Rik"
                     /note="RIKEN cDNA A830018L16 gene"
                     /db_xref="GeneID:320492"
                     /db_xref="MGI:MGI:2444149"
     exon            1..533
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             465..1853
                     /gene="A830018L16Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C8orf34 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C8orf34 homolog isoform
                     1"
                     /protein_id="NP_001153841.1"
                     /db_xref="CCDS:CCDS48219.1"
                     /db_xref="GeneID:320492"
                     /db_xref="MGI:MGI:2444149"
                     /translation="MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDH
                     LQSKQGNQGQLQRALSGSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDL
                     AVSNISPPSPDSKSLPRSVDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRS
                     IAISDELDKETLAFNSSLLRPRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESE
                     DSSSSPAGSLKMEPKTKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNED
                     DAMELLENLDDLRMEGVTTLVLSGSKFNQGRPTHPAEPQAKVTLNICSRCARLQGDNL
                     MERTEDTLQILHTPDEIIPDSLDSLPGTEETLMEEGEDFEKTSNLTEPGEASSGAHSL
                     KSYMEEDESLKQLQVVHQPWLLPSDTESEGIEAEQDKRSADLLCVPCSSCPTLIYSGL
                     SVKPAKEVASGP"
     exon            534..681
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            682..813
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            814..942
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            943..971
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1144
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..1311
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1447
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1448..1533
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..1610
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1611..1658
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1659..1752
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1753..1809
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..2789
                     /gene="A830018L16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2629..2634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A830018L16Rik"
                     /note="hexamer: AACAAG"
     polyA_site      2652
                     /gene="A830018L16Rik"
                     /note="major polyA site"
     regulatory      2674..2679
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A830018L16Rik"
                     /note="hexamer: AATACA"
     polyA_site      2693
                     /gene="A830018L16Rik"
     regulatory      2697..2702
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A830018L16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2733
                     /gene="A830018L16Rik"
     regulatory      2767..2772
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A830018L16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2789
                     /gene="A830018L16Rik"
ORIGIN      
        1 gggtgctggt tcctggcagc caggagctgg gcgcacaccg tggcgcgctc tgggcggttc
       61 cgcgcgctgt cgcccctgcg gccggcgctg tcccccgctc ggctcgcgaa ggcactgcac
      121 agacactcgc cttcggccac cggctcctgc tgctgctgcc gcccagagga cagaccagcc
      181 tctgcccgcg atttcgcctc ggcggcggtg ctgcggaaag cggagagcgg gtgggcgcga
      241 gctgcaggat gcgatgtagt tctctccttg cctcggagtt gtctgagttg gtagagcctc
      301 gcccgggttc cctgagccct gctcccttcg ggctcgctgc taacggagtt gctagccatc
      361 gctgtgccag aaagctcagg ctcggagctc ctgccctggg gtagagtaga gctgtcccca
      421 gccgaggcgc attgtcttct ctctgctgac ccatctgttt tctcatggca tctcgtcaac
      481 aaacccgaat ccaggcttac ctggagaaaa acaagatcgg tcctctgttt gaggaattaa
      541 tgaccaagtt aataactgag acacctgacc agccaattcc atttctcatt gaccatcttc
      601 aatctaaaca aggaaaccaa ggacaactgc aaagagcttt gtcagggtca gcagctctct
      661 gggcagaaag tgaatcatca gaacccaaag gaacgagaag ggattttaga agctatgata
      721 aaccttggca gatgaatgca aagaagccta aaaaatcaaa aagtgatctg gctgtatcta
      781 atatttctcc tccatcacca gactccaaat cattgccaag gtcagtagac catcttaagt
      841 ggaactggcg gactaaacca caaagccgtg attttgatga attgaaccac atccttcaag
      901 agagcaagaa gctggggaaa gcccttgaga atctctctcg aagtatcgcg atttcagatg
      961 aacttgataa ggaaacattg gctttcaatt cctctcttct gagacctcgt gtgattgggg
     1021 agtggatcgg cagggcagaa aatgatgctg atccccttgc agctgaaatg ctgcagccgc
     1081 cggttccgcg gagtaagaat gactcatggg aaagtgaaga cagcagctcc agtccagcag
     1141 gaagcttaaa gatggagccc aagacgaaag gattaaaaca gcagcagcag cagcacaaga
     1201 aactcctggc tgcaatgctt tcccaggact ccttcgagtc catccatagc cccacaccat
     1261 ctgtaataga agaagacatt gataatgaag acgatgcaat ggagttgctg gaaaatctgg
     1321 atgacttaag gatggagggt gtaaccactc tggtactttc ggggagcaaa tttaaccaag
     1381 gtcgtcctac tcaccctgcc gagccacagg ccaaagtcac actgaacatc tgttcaaggt
     1441 gtgccaggct tcaaggagac aacttgatgg aaagaacaga agacacacta caaatacttc
     1501 atactccaga tgagataatc ccagactcat tagattcttt acctgggaca gaagaaactc
     1561 ttatggagga aggtgaagat tttgagaaaa catcaaactt aacagaacca ggagaagcct
     1621 ctagtggagc acactctttg aaatcctaca tggaagaaga tgagtctttg aagcaattgc
     1681 aggttgtgca tcagccatgg cttttaccaa gtgacacaga aagtgaagga attgaagcag
     1741 agcaagacaa acgttctgct gatcttctct gtgtgccatg ctcgtcctgt cctaccctga
     1801 tctattcagg tctgtctgtg aaaccggcaa aggaagttgc aagtggtcct taagaatatt
     1861 atagctgact gaatccttac ttattgtcct aatttgatgt actaaatgta atatctaaag
     1921 aaatgtcatt ttcctaatgt caataataaa caagaactct tgtaagtagg gtgtgcacta
     1981 atgtatagta caagaacact aattcaggca cagcagtctg ttgtctatgg gatttgatac
     2041 tctttgatct gctcagtgtc ttgggtttat gttactttat atgtagttat taaaatagtg
     2101 cttaaaattt tctggatttt aatttagcta gggttttcta cttctatttt tataataata
     2161 gctcatattt tggattaata cacattatac ttgcccacat gtgccacatt agtcctgtgc
     2221 agcagttgac tgcttagtgt taacctcttt gcatcaggaa gaaatttatc ccccacaact
     2281 gccccgattt gattatatta cctattccta tttaaatatg atgggtatgt tacttcagta
     2341 aagcaaacta atgaataatg aaatgcatgc cctcaggaca cttgcaagga aaaatcactt
     2401 gattatgtat gcaattattg agctacacct tacttttgga atgtgctttg tacttattct
     2461 aaatgaattg atatcagtca atctattgac tatatctgct atattttatc ttatttgtct
     2521 taatacaagt tttttttggt gggctttaat gaattaaggc taaattatac aactctgtat
     2581 aactgtaaaa gaaacaattg ttaaagactc gaccatagct aaggaataaa caagcagttt
     2641 ctgacttctg aattaagtca tgtttaaaat ataaatacag acattagaaa tgatgtaata
     2701 aattttctta catttttttc ttgtatgatg aaactaattt tagtaataag tatttttata
     2761 gatggcaata aattaaaggt tatgtatcaa aaaaaaaaaa aaaaa
//
