LOCUS       NM_181048               3792 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA A130010J15 gene (A130010J15Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_181048
VERSION     NM_181048.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY011244.1, AK037364.1 and AL365322.10.
            
            On May 21, 2009 this sequence version replaced NM_181048.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC055955.1, AK037364.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 BY011244.1         1-3
            4-2084              AK037364.1         1-2081
            2085-3792           AL365322.10        56257-57964         c
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 97.62 cM"
     gene            1..3792
                     /gene="A130010J15Rik"
                     /note="RIKEN cDNA A130010J15 gene"
                     /db_xref="GeneID:319266"
                     /db_xref="MGI:MGI:2441776"
     exon            1..204
                     /gene="A130010J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            205..3792
                     /gene="A130010J15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             302..1093
                     /gene="A130010J15Rik"
                     /codon_start=1
                     /product="UPF0739 protein C1orf74 homolog"
                     /protein_id="NP_851391.1"
                     /db_xref="CCDS:CCDS15633.1"
                     /db_xref="GeneID:319266"
                     /db_xref="MGI:MGI:2441776"
                     /translation="MSTPSPQLLVAAAQQTLGMGKRKCPPRATCLHLAGEVLAVARGL
                     KPAVLYDCNSAGVLALQSYLEELQGLGFLEPGLHILEIGENNFIVSPEYACQHLEQTL
                     LGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVITRFRGLKKDVSQGVSYTRLHSSD
                     WNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVFTARISWLPGQPSILLYSFSVP
                     ESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVTLPAVAL"
     regulatory      2239..2244
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A130010J15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2263
                     /gene="A130010J15Rik"
                     /note="major polyA site"
     regulatory      3635..3640
                     /regulatory_class="polyA_signal_sequence"
                     /gene="A130010J15Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      3654
                     /gene="A130010J15Rik"
ORIGIN      
        1 gtcaggctgt ctttccctgg gcttctgcac acactgtcgg gttttcacag taccgagtgt
       61 ggggcgtggg agggcactac gccgctggcg ggcaggcgga agggcttcct gcgcccccga
      121 acctgcggcg gaaatgctag ccgagtgtct tgaggcagag cgcttccttt tgtaactagt
      181 ctaccaccgc gtaggcacgt gtgggatctt tctcaagtgc tgggagctga actgtgtgtg
      241 gcccagggaa aggaactgtg gctagctaag gaggccatat gtcatgtaac ttccagatct
      301 tatgtcaaca ccaagccctc agctgctggt ggcagctgct cagcagactc tgggcatggg
      361 caagagaaaa tgcccacctc gagctacctg ccttcacctg gcaggagagg tgctggctgt
      421 ggcccgcggg ctgaagccag ctgtactcta tgattgcaac tctgcaggag tattggcgct
      481 ccaaagttat ctggaggaac tacaggggct gggcttcctg gagccaggac ttcacattct
      541 tgagattgga gagaataact ttattgtcag tcctgagtat gcctgtcagc atttggaaca
      601 gacactgctt ggtactgtag ctttcgtgga cgtttcccgc tcccaacctc atccttctgt
      661 ccggtcggtg gaccagctcc cggacttgaa atctctcata gctgacgtca tcacacgttt
      721 tcgaggactt aagaaagatg tgtctcaggg agtctcctac accaggctac attcctcaga
      781 ctggaatctc tgcactgtat ttgggatact cctgggatat ccagtctctt acacatttga
      841 cctgaaccgt gaagatgaca actgcttaac catgactccc ctgcgggtgt ttactgcccg
      901 gatttcgtgg ctgcctggtc aaccatcaat tctgctgtac tcctttagtg ttccagagag
      961 tttgttccca gccctgaaaa actttctaag tgcctgggag aaggaactca gaacccgatt
     1021 tagggctcag aatgcctttg ctgacctcag catctcctct gaggtggtca cacttcctgc
     1081 tgtggccctc tgagttaact ctgtccgttg agaaggtatc aatgaatgtc aattacgatg
     1141 aatgttgtgc agtcaattga acacgtgtga atggggagag tcgttggcag cagtagtatg
     1201 atttcagtct ttatattagg agttcctagg tccttagccg aggtgtctgt ttatttttca
     1261 ttgaatgaga gatggaaaag gagcattgtg gagacatgag tgtaccctgg gatggtggcc
     1321 ttccctggtg gatagtgcct tagagggaag gagaatgact aggtaatcta tgtatggaac
     1381 tctaactgaa gtagggtgcg agacaatgat gcttaagggt tacacttgtg gcttatttct
     1441 caggaataca cagttctaaa gagtagtctt gtgagataaa gtttatttac aacctggtga
     1501 aaaaaaaata aaactaagag tccggattca tttggaggga aacccaagtt ataaagtacc
     1561 agaactcaag gttttcatgg agttgtttgc atctgagttt tacttcagat agatgccaga
     1621 agttcttcag atgaccaggt tgcctttgtt tgccaggaac actgccagtg ctgtagcaat
     1681 caccaccatc agcactggga gccattgacc acactgcagc tgtatggaag gaggtggaga
     1741 caggagagag cagctatgaa ttagctggag aaagtatggg caagaatagt cctttggcat
     1801 tttaacccag tagaagacct cacactggtg gcagaagggg cttttttttt ttttttctct
     1861 tcagtgtctc cctcactttt tgtcatttcc actagataaa accagtttac tagtggccta
     1921 gagactcata tctgacaggg gacagatatt taaatgctga tctgaatgag gtggaaatta
     1981 actcagcaga ataacactct ttgtacacgc ctcaatactt ttgcagtcct cctctgccct
     2041 tgtcattatg tttacaataa atcaaaaaag tactctttca tgcttgaacc aatacaggct
     2101 gaatatcctt tttctgaaat gcttgggatt aggactcatt caaattttgt cttttttttt
     2161 cccattagta tttgtttagt atttgtatta gtatttgtag tagtagtatt agtatttgtt
     2221 taccagttga gcagacgtaa taaaaagaca tctgaatacc aaatgtcctg aaatcatttg
     2281 attcttttga gcattgtgct tctttgtgca tggtgtgctc tggatctaga acatgtcagg
     2341 tttccatagc aggagtgctc aatctagtgt cttccagact cgagaggtgc atagaaatgg
     2401 ggtgaatagt ggacagtgtt tcttccatgt ttgctgtatt gttggcatag tgtaaatcaa
     2461 gtggaatggg acaggatgac cagatgttgg tgtggactga tatattttat ctgtaacact
     2521 aggcttaaaa aagaactatt cagctgggca gtggtggcac acacctttaa tcacagcact
     2581 tgggaggcag atgcaggtgg atttctgagt tcgaggtcag cttggtctac agagtgagtt
     2641 ccaggacagc caaggctaca cagagaaacc ctgtctcaaa gaaaaaaaaa aaagaaagaa
     2701 aaaaatccac caccaccacc accaccaaaa ggaactaccc cactgtgatg tagggctgta
     2761 gagggggatg gcccttctta ctctgggaaa tggctcctgg ctgtgcctca gtgcttcttg
     2821 actgtgatgt agcttttgca aaaaagaaag gtacttctca ttgaggatgt ctattctgaa
     2881 tgcagttctc tgcactgggg agagcatagc aaggtgtcat cagctcattc tctctctctc
     2941 tctctctctc tctctctctc tctctttctc tctttccttc ttttctttct tttttaaaga
     3001 tttatttatt atatgtatat aagttacacc agaagagtgc atcagatccc attacagatg
     3061 gttgtgagcc ctcatgtggt tgctgggaat tgaactcagg acctctggaa gaacagccaa
     3121 tgctcttcac cagtgagcca tctctccagc ccccagttct ctttccaaca gaattctgga
     3181 agaggactgc cctgagtact atactccttc acttgtttta agtgaactat tttctaaccc
     3241 aaatttctca gagattttag tcttcttcct atcatatagt ttattgtgag tatgttgagt
     3301 tataagattg gttatgatgc atctgttaca ttttacacat agaaacactt tcaattattc
     3361 tgcattattt attcattgtt agggttgtga gtgtgtgtgt atgtatgcta atatcttgta
     3421 catgtgtgtg taagtcagaa gacaactctt cgagtcactt ctttcctgcc atctctatgg
     3481 taggtcccag ggattgaact cagggcatca ggcttggcag caggtacctt tacctactaa
     3541 gccagcttat tggccccagg acttgtaaat gctttcatgt gactttgtga aaatgctctg
     3601 tatgtgggca aactaataaa taaacaaata aagaaagaaa taagttcttc agcactggag
     3661 gacatgcctc tcttccttgg tgtctagttg cttctgcaca cttccaagag tgtgagtttg
     3721 aaagaatgtt cctaggaaag tgtttgttat ttaaaagata caacataaaa taaagcattc
     3781 tgatacttag ta
//
