LOCUS       NM_001177896            3730 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus RIKEN cDNA 9830107B12 gene (9830107B12Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001177896
VERSION     NM_001177896.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Lewandowski JP, Du F, Zhang S, Powell MB, Falkenstein KN, Ji H and
            Vokes SA.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY207169.1, EF646801.1 and AK079398.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF646801.1, AK170292.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-299               BY207169.1         1-299
            300-3050            EF646801.1         1-2751
            3051-3730           AK079398.1         2921-3600
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 23.99 cM"
     gene            1..3730
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /note="RIKEN cDNA 9830107B12 gene"
                     /db_xref="GeneID:328829"
                     /db_xref="MGI:MGI:3608415"
     exon            1..357
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..896
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; triggering receptor expressed in myeloid cells
                     5; triggering receptor expressed on myeloid cells 5"
                     /codon_start=1
                     /product="uncharacterized protein LOC328829 isoform 1
                     precursor"
                     /protein_id="NP_001171367.1"
                     /db_xref="CCDS:CCDS89112.1"
                     /db_xref="GeneID:328829"
                     /db_xref="MGI:MGI:3608415"
                     /translation="MAWEPTYLLSPVLLLLLASGSWTQNPELLRVLEGKTVSVTCMYD
                     PLYNSDEKIWCKQIDNLCYPLVSKGAEKPRFSILQSSKFNFFTVTMSKLRMSDSGIYH
                     CGIAANTRITYLRGIQLVVSKDDSSAPANGTFPTLRAHTFRTTQDPISIAARGSVSSV
                     TIPVVCGLLSKTLVFTVLFIVTQKSFGRQAMKAHNSNS"
     exon            358..669
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /inference="alignment:Splign:2.1.0"
     exon            670..760
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /inference="alignment:Splign:2.1.0"
     exon            761..3730
                     /gene="9830107B12Rik"
                     /gene_synonym="Trem5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttcctccta ggccttctca gccctcctca ggcctggcct tgtgcgtcag gagatcagag
       61 tctctgagag actttatcta gttcagagca ggggcctaga ctcgaagcct gtagctggag
      121 gatccacagg accttacaga ccttgcccag cttctctctc atccacagag gtctctgcct
      181 tccttagcag ctcctgcagg actggctgtg gtggctcctg aatcctgccc agggttgctc
      241 tcctctctca gagctccact cctttcttgc tccccatctc agctcaggag gattctgtga
      301 tggcctggga gcccacatac ctgctctccc cagtgctgct gctgctcctg gcctcaggct
      361 cctggacaca gaacccagag ttacttcgag tactggaggg caagactgtt tctgtgacat
      421 gcatgtatga tccactctac aactctgatg agaagatctg gtgtaagcaa atagacaact
      481 tgtgttaccc cttggtcagc aaaggtgccg agaagccaag attctccatc ctacagtctt
      541 ctaagttcaa cttcttcact gtcaccatga gtaagctcag gatgagtgac tcgggcatct
      601 atcactgtgg gatcgctgca aataccagga taacttatct cagaggtatc caactggtgg
      661 tgtcaaaaga tgattcaagt gctcctgcca atgggacatt tccaactctg agagctcaca
      721 cttttaggac cacacaggac ccgatctcca ttgctgccag gggctctgta tccagtgtta
      781 ctattcccgt ggtctgtgga ctcctcagca agacactggt attcacggtc ttattcattg
      841 tcacacagaa gtcatttgga cgacaggcca tgaaggcaca caacagtaac tcctgacctt
      901 aagccaagtc tatgtcaaag gaggagctga gatgggggct aaacaggaac tatatgacat
      961 gaattgaggc tgtaatcatg ggtgacatct aaggcataag atgtcctcag ctggtcctgc
     1021 ccactttgtg gagagctttt ggggcctctt ctagaaactt ggcaggattt tgatacgacg
     1081 gcaggacaaa aattgtaagc ctaggcaggg ttacatttca ttactcaggg ttttactcag
     1141 ggttcgctag agtcacagac cttatgggta gtctctatat agtaaaagaa tttgtactta
     1201 cactctgcaa cctaactccc aacaatggtc agcagcagct gtgaatggaa atctaaggat
     1261 ctagcagttg ctcagtccca caaggcaagc aggaaaagag caagccttcc ttcttccaat
     1321 gtccttatat agatctccag cagaaggtgt agcccagatt aaaggtgtgt gccactatgc
     1381 ctttaatccc agatgacctt gaactcccag tcttaatctt ctggaatcca tagccactat
     1441 gcctcaagat gtccatacca ggatccaggt ctgaaacttc tatctcccag cctccagatt
     1501 aagatctagt gagccttcca attccggatt gtagatcatc ccagatatag taaaaatgac
     1561 aaccaggaat agccactaca ctgacattga tctggaaata ggcccaggtt aagaacattt
     1621 atctttgagc taatgcaaac tcagagcagg ctcagctaag gcatgtgtgg cagtcctttt
     1681 gtcttggtca tcctgactag cccctagaaa cggtgtttac tggattttgt ttattgcctt
     1741 gcttattctc tgacccagaa ctgatttatt atttgtatgt agatgaattg gtataaaagc
     1801 atactagaaa aaaaaaaaga aacctctttc agcctcagaa ctggctgggg tcatgctaca
     1861 gtgttgtcta attgtcttcc ttcttttcaa tccttacacc cttcttggag aacccattga
     1921 ctgattgagc tggcttggtc accactctcc tcattttatc catcatctta gaaatgtgct
     1981 ctgcaccctc aaaaaagagg aatcaattcc cagcacactc ttgtcattcc ccctaaatag
     2041 gtaggtttgt ctgaaataaa gacagagccc tgtgcttctc ctgtctcctt ttttgggagt
     2101 caagattaga ggtcaccatt gatatcccca ccccttgtct ctttcttaga tggtacaatt
     2161 ctagtcatct tggcagggcc cttgctcatg tagcagcctc ccctcctact ctgggccttc
     2221 ctctctggga gtcagacact cagatttctg ccttcatctg tggtcctctg aacactccca
     2281 tccatggacc aagaagacaa gatcccacct tgacaataat gcagctccaa gagagaaatc
     2341 gagttaagct ggatgttgtt gcctggaaga catctggagg aagaaatggc attgaaggac
     2401 tgcatcagga catggcatca aggtgctatg tgcgtttgat cattcatgac tcctcagtga
     2461 aacccatgat agtcaaggtg caggagcagc aggacatttc ctcctggcag gaatgaagtc
     2521 tagagagttc ctttgctcga gggctccata ggcagggaga tggagagcca ggctctgctg
     2581 ctagctgaat gcctttttgc ctggactgag acaactcagt tgtcatgtca gggggaagga
     2641 tcctatttca gactgcctcc tgtgtgcctc tacccccatc tcaccttctt tcataagact
     2701 ctggcaaggc ttagcttagt ggggaccccc tgagtgaacc atatggagca gggaatccat
     2761 gcaaaatgca agaggaactt ataattccag tgcactaggg tcatcccagt cccaaatgag
     2821 aggcggcaac cttggtggcc catttagcaa gttttgatat ggtttcctgg ggcagattag
     2881 agcatcaaca actaagcacc atatgattgg cagaacagtg tgccctttaa actgactggt
     2941 ctttggggaa tgaggtagta ggggcttact cagtctttct gttctggcct atgtgctctc
     3001 tgacatgtct cttccaggag gagagaggtc cagttgaatt ttctaacagc tctgagctga
     3061 cctcttcact tttgcctctc agtctcagcc caggtagcct atggcttcag tgctctctct
     3121 gagacacata ggcattttct tgattccacc tctttgggtt ctactgacca agtgaccctg
     3181 tgggtgggaa aagaatggta aattagttcc ttctacttta gcagtggcgc gagccaactt
     3241 catcccaggg ttcccaagag caaacacatc accacatagc atccagctca cttgaaatca
     3301 gccagaaggc tgaggagtga ctgaaacact catctcaggt caggaaagca cattcctgtc
     3361 agggagactt tcccatcctc ctcctgtgaa gaccccaggt attgaggtgt gcgtctgtca
     3421 cataaggatg gttcactgtg aacatggctc tctgtgtaac tctaccctgt ggtggcattg
     3481 atgagggtat ttacagcccc acaggctcca gtctgctggg agaggcctca gtggaattca
     3541 ctttatgttg gtgctctgag tggatcttta gagaattgat ccagaaaatg atcacctcag
     3601 tatgactatg tgacttttcc tgccaaaaga accaaactgt tacttcctgg gcttttctac
     3661 ccagcacttc tctgttccct gaagtaatga ctctgagtct tcttgttgat taataaatgc
     3721 tataggattc
//
